Wall clock time and date at job start Mon Mar 30 2020 03:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31639 * 1 3 3 Si 1.86791 * 119.99943 * 2 1 4 4 H 1.48500 * 109.47079 * 239.99663 * 3 2 1 5 5 H 1.48496 * 109.47406 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46936 * 120.00408 * 3 2 1 7 7 C 1.38802 * 119.99646 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99804 * 179.97438 * 7 2 1 9 9 S 1.76202 * 120.00119 * 0.02562 * 7 2 1 10 10 C 1.81002 * 99.99960 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47326 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47060 * 180.02562 * 11 10 9 13 13 S 1.81408 * 109.46799 * 180.02562 * 12 11 10 14 14 C 1.76195 * 102.99684 * 179.97438 * 13 12 11 15 15 N 1.33427 * 126.27032 * 359.68621 * 14 13 12 16 16 N 1.28569 * 109.89311 * 179.82045 * 15 14 13 17 17 N 1.28940 * 109.64227 * 0.45313 * 16 15 14 18 18 H 0.96997 * 126.46788 * 179.72952 * 17 16 15 19 19 N 1.31736 * 126.26556 * 179.97438 * 14 13 12 20 20 H 0.96996 * 119.99820 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.47154 * 59.99635 * 10 9 7 22 22 H 1.08998 * 109.46967 * 300.00351 * 10 9 7 23 23 H 1.09002 * 109.47153 * 59.99816 * 11 10 9 24 24 H 1.09001 * 109.46832 * 300.00007 * 11 10 9 25 25 H 1.09001 * 109.47194 * 299.99650 * 12 11 10 26 26 H 1.08992 * 109.47399 * 59.99823 * 12 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7464 0.0006 6 1 3.1042 1.6963 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8915 0.0005 11 6 1.9792 -5.3243 0.0012 12 6 3.1513 -6.3078 0.0018 13 16 2.5151 -8.0066 0.0018 14 6 3.9839 -8.9798 0.0018 15 7 5.2361 -8.5191 -0.0041 16 7 6.0641 -9.5026 0.0017 17 7 5.4143 -10.6163 0.0017 18 1 5.7975 -11.5074 0.0018 19 7 4.0468 -10.2957 0.0023 20 1 -0.4850 0.8400 0.0004 21 1 3.1244 -3.7314 0.8905 22 1 3.1244 -3.7314 -0.8894 23 1 1.3703 -5.4847 -0.8886 24 1 1.3709 -5.4841 0.8914 25 1 3.7600 -6.1482 -0.8882 26 1 3.7598 -6.1473 0.8917 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379368842.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:13 Heat of formation + Delta-G solvation = 103.813663 kcal Electronic energy + Delta-G solvation = -12408.610359 eV Core-core repulsion = 9970.422479 eV Total energy + Delta-G solvation = -2438.187880 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 246.030 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -43.42741 -34.44974 -33.78562 -33.05310 -32.43533 -27.26698 -25.55318 -24.93579 -23.73697 -21.40304 -19.60005 -17.49668 -17.19095 -16.87800 -15.29080 -14.91852 -14.79502 -14.59735 -14.01103 -13.14005 -12.78725 -12.68195 -11.94429 -11.79347 -11.71659 -11.29253 -11.12473 -11.05570 -10.97409 -10.68649 -10.61698 -10.49089 -9.61438 -9.05845 -8.34975 -8.05833 -6.55474 -6.23643 -3.94699 0.59325 0.65433 1.77471 1.95930 2.14192 3.21969 3.23897 3.28446 3.53439 4.03837 4.21061 4.50088 4.99064 5.06385 5.12645 5.12747 5.36055 5.53547 5.71508 5.90337 6.18085 6.19734 6.41412 6.63305 7.59973 7.72604 8.35767 9.22701 10.84437 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.062833 B = 0.003618 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.517552 B = 7736.905162 C = 8156.674529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.071 3.929 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.518 4.518 8 H 0.073 0.927 9 S -0.127 6.127 10 C -0.109 4.109 11 C -0.085 4.085 12 C -0.106 4.106 13 S 0.045 5.955 14 C 0.178 3.822 15 N -0.301 5.301 16 N 0.016 4.984 17 N -0.297 5.297 18 H 0.469 0.531 19 N -0.281 5.281 20 H 0.268 0.732 21 H 0.065 0.935 22 H 0.065 0.935 23 H 0.079 0.921 24 H 0.079 0.921 25 H 0.097 0.903 26 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.086 -18.503 0.009 20.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.138 4.138 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.666 4.666 8 H 0.091 0.909 9 S 0.101 5.899 10 C -0.259 4.259 11 C -0.125 4.125 12 C -0.256 4.256 13 S 0.271 5.729 14 C -0.213 4.213 15 N -0.182 5.182 16 N 0.019 4.981 17 N -0.146 5.146 18 H 0.324 0.676 19 N -0.128 5.128 20 H 0.078 0.922 21 H 0.084 0.916 22 H 0.084 0.916 23 H 0.098 0.902 24 H 0.098 0.902 25 H 0.116 0.884 26 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 6.282 -19.083 0.005 20.091 hybrid contribution 3.065 1.019 0.001 3.230 sum 9.347 -18.064 0.007 20.339 Atomic orbital electron populations 1.70010 1.05913 1.27500 1.47073 1.25017 0.95094 0.99105 0.94544 0.86211 0.79227 0.81154 0.78876 1.19917 1.20819 1.19921 1.22646 0.94540 0.90651 1.58742 0.90871 1.84647 1.09005 0.99382 1.96902 1.23243 1.03258 0.95940 1.03487 1.21078 0.95277 0.91951 1.04205 1.23958 1.03167 0.91127 1.07384 1.85939 0.96541 0.99350 1.91079 1.27851 0.99476 0.93300 1.00679 1.75723 0.97671 1.22599 1.22159 1.78247 1.22170 0.89086 1.08598 1.51110 1.02681 1.10388 1.50400 0.67629 1.78931 0.94723 1.12668 1.26472 0.92213 0.91627 0.91621 0.90214 0.90219 0.88397 0.88398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.66 13.22 55.49 0.73 -24.92 15 2 C 0.07 2.01 5.49 -17.43 -0.10 1.91 15 3 Si 0.92 21.31 29.55 -169.99 -5.02 16.29 15 4 H -0.27 -6.23 7.11 56.52 0.40 -5.82 15 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 15 6 H -0.27 -6.23 7.11 56.52 0.40 -5.83 15 7 C -0.52 -14.57 9.50 30.94 0.29 -14.28 15 8 H 0.07 1.99 7.80 -52.49 -0.41 1.58 15 9 S -0.13 -3.23 21.44 -107.50 -2.30 -5.54 15 10 C -0.11 -2.06 5.67 37.16 0.21 -1.85 15 11 C -0.08 -1.26 5.22 -26.73 -0.14 -1.40 15 12 C -0.11 -1.33 5.60 37.16 0.21 -1.12 15 13 S 0.04 0.54 22.16 -107.50 -2.38 -1.85 15 14 C 0.18 2.29 8.44 -90.78 -0.77 1.52 15 15 N -0.30 -4.02 11.92 30.16 0.36 -3.67 15 16 N 0.02 0.18 13.43 60.35 0.81 0.99 15 17 N -0.30 -2.57 8.45 60.35 0.51 -2.06 15 18 H 0.47 1.71 8.96 -331.94 -2.98 -1.26 15 19 N -0.28 -3.28 12.90 30.17 0.39 -2.89 15 20 H 0.27 7.39 8.31 -40.82 -0.34 7.05 15 21 H 0.06 1.23 8.14 -51.92 -0.42 0.81 15 22 H 0.07 1.23 8.14 -51.92 -0.42 0.81 15 23 H 0.08 1.17 8.14 -51.93 -0.42 0.75 15 24 H 0.08 1.17 8.14 -51.93 -0.42 0.75 15 25 H 0.10 1.21 8.14 -51.92 -0.42 0.79 15 26 H 0.10 1.21 8.14 -51.93 -0.42 0.79 15 LS Contribution 268.24 15.07 4.04 4.04 Total: -1.00 -32.22 268.24 -8.21 -40.43 By element: Atomic # 1 Polarization: -0.56 SS G_CDS: -5.06 Total: -5.61 kcal Atomic # 6 Polarization: -14.93 SS G_CDS: -0.29 Total: -15.21 kcal Atomic # 7 Polarization: -35.35 SS G_CDS: 2.80 Total: -32.55 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: -2.69 SS G_CDS: -4.69 Total: -7.38 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -32.22 -8.21 -40.43 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379368842.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.241 kcal (2) G-P(sol) polarization free energy of solvation -32.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds