Wall clock time and date at job start Mon Mar 30 2020 03:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31639 * 1 3 3 Si 1.86791 * 119.99943 * 2 1 4 4 H 1.48500 * 109.47079 * 239.99663 * 3 2 1 5 5 H 1.48496 * 109.47406 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46936 * 120.00408 * 3 2 1 7 7 C 1.38802 * 119.99646 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99804 * 179.97438 * 7 2 1 9 9 S 1.76202 * 120.00119 * 0.02562 * 7 2 1 10 10 C 1.81002 * 99.99960 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47326 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47060 * 180.02562 * 11 10 9 13 13 S 1.81408 * 109.46799 * 180.02562 * 12 11 10 14 14 C 1.76195 * 102.99684 * 179.97438 * 13 12 11 15 15 N 1.33427 * 126.27032 * 359.68621 * 14 13 12 16 16 N 1.28569 * 109.89311 * 179.82045 * 15 14 13 17 17 N 1.28940 * 109.64227 * 0.45313 * 16 15 14 18 18 H 0.96997 * 126.46788 * 179.72952 * 17 16 15 19 19 N 1.31736 * 126.26556 * 179.97438 * 14 13 12 20 20 H 0.96996 * 119.99820 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.47154 * 59.99635 * 10 9 7 22 22 H 1.08998 * 109.46967 * 300.00351 * 10 9 7 23 23 H 1.09002 * 109.47153 * 59.99816 * 11 10 9 24 24 H 1.09001 * 109.46832 * 300.00007 * 11 10 9 25 25 H 1.09001 * 109.47194 * 299.99650 * 12 11 10 26 26 H 1.08992 * 109.47399 * 59.99823 * 12 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7464 0.0006 6 1 3.1042 1.6963 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8915 0.0005 11 6 1.9792 -5.3243 0.0012 12 6 3.1513 -6.3078 0.0018 13 16 2.5151 -8.0066 0.0018 14 6 3.9839 -8.9798 0.0018 15 7 5.2361 -8.5191 -0.0041 16 7 6.0641 -9.5026 0.0017 17 7 5.4143 -10.6163 0.0017 18 1 5.7975 -11.5074 0.0018 19 7 4.0468 -10.2957 0.0023 20 1 -0.4850 0.8400 0.0004 21 1 3.1244 -3.7314 0.8905 22 1 3.1244 -3.7314 -0.8894 23 1 1.3703 -5.4847 -0.8886 24 1 1.3709 -5.4841 0.8914 25 1 3.7600 -6.1482 -0.8882 26 1 3.7598 -6.1473 0.8917 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379368842.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:13 Heat of formation + Delta-G solvation = 81.869830 kcal Electronic energy + Delta-G solvation = -12409.561915 eV Core-core repulsion = 9970.422479 eV Total energy + Delta-G solvation = -2439.139436 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 246.030 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -44.30897 -35.71675 -34.66254 -34.56079 -33.94965 -28.62878 -27.57981 -25.90354 -24.65650 -22.69452 -20.44825 -19.53679 -18.12375 -17.76282 -16.85978 -16.50381 -16.37607 -15.60565 -15.30596 -14.86265 -14.07257 -13.59762 -13.55375 -13.33948 -12.90210 -12.74768 -12.64047 -12.44586 -12.19758 -12.01234 -11.88882 -11.61714 -11.37180 -11.10233 -10.29585 -8.98562 -8.62457 -8.34243 -6.09786 -0.27810 -0.26837 0.83116 0.97117 1.35015 1.43488 1.44273 1.50460 1.79410 2.31259 3.00236 3.15302 3.33946 3.58554 3.89303 3.97650 4.18731 4.21556 4.38982 4.68771 4.82599 5.05805 5.23808 5.43717 5.62664 6.21464 6.83933 7.08417 8.74689 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.062833 B = 0.003618 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.517552 B = 7736.905162 C = 8156.674529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.015 3.985 3 Si 0.992 3.008 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.265 1.265 7 C -0.538 4.538 8 H 0.074 0.926 9 S -0.191 6.191 10 C -0.086 4.086 11 C -0.074 4.074 12 C -0.099 4.099 13 S 0.061 5.939 14 C 0.166 3.834 15 N -0.328 5.328 16 N 0.013 4.987 17 N -0.266 5.266 18 H 0.489 0.511 19 N -0.289 5.289 20 H 0.271 0.729 21 H 0.068 0.932 22 H 0.068 0.932 23 H 0.081 0.919 24 H 0.081 0.919 25 H 0.102 0.898 26 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.458 -19.288 0.010 21.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.190 4.190 3 Si 0.814 3.186 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.190 1.190 7 C -0.686 4.686 8 H 0.092 0.908 9 S 0.037 5.963 10 C -0.236 4.236 11 C -0.115 4.115 12 C -0.250 4.250 13 S 0.287 5.713 14 C -0.226 4.226 15 N -0.207 5.207 16 N 0.016 4.984 17 N -0.120 5.120 18 H 0.349 0.651 19 N -0.137 5.137 20 H 0.080 0.920 21 H 0.087 0.913 22 H 0.087 0.913 23 H 0.100 0.900 24 H 0.100 0.900 25 H 0.120 0.880 26 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 7.672 -19.895 0.006 21.323 hybrid contribution 2.696 1.058 0.001 2.896 sum 10.368 -18.837 0.007 21.502 Atomic orbital electron populations 1.70145 1.07615 1.28566 1.47989 1.26042 0.96019 1.03045 0.93852 0.85092 0.77937 0.76254 0.79308 1.18992 1.20095 1.19002 1.23023 0.94829 0.91994 1.58785 0.90758 1.84619 1.13589 1.00988 1.97061 1.23157 1.00431 0.96309 1.03736 1.20909 0.96099 0.89993 1.04483 1.23731 1.01975 0.91409 1.07886 1.85837 0.95957 0.98327 1.91202 1.27911 0.99578 0.93725 1.01346 1.75704 0.97972 1.23577 1.23478 1.78188 1.21986 0.89459 1.08753 1.51114 1.01734 1.11048 1.48069 0.65112 1.78879 0.96010 1.12254 1.26533 0.92003 0.91297 0.91293 0.90006 0.90010 0.87964 0.87958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.16 13.22 21.65 0.29 -53.88 15 2 C 0.02 0.87 5.49 84.86 0.47 1.34 15 3 Si 0.99 43.49 29.55 68.60 2.03 45.52 15 4 H -0.27 -11.16 7.11 99.48 0.71 -10.45 15 5 H -0.28 -11.68 7.11 99.48 0.71 -10.97 15 6 H -0.27 -11.17 7.11 99.48 0.71 -10.46 15 7 C -0.54 -30.53 9.50 67.95 0.65 -29.88 15 8 H 0.07 4.04 7.80 -2.91 -0.02 4.02 15 9 S -0.19 -9.84 21.44 -56.49 -1.21 -11.05 15 10 C -0.09 -3.20 5.67 71.98 0.41 -2.79 15 11 C -0.07 -2.13 5.22 30.59 0.16 -1.97 15 12 C -0.10 -2.33 5.60 71.98 0.40 -1.93 15 13 S 0.06 1.37 22.16 -56.49 -1.25 0.11 15 14 C 0.17 3.97 8.44 180.40 1.52 5.50 15 15 N -0.33 -8.24 11.92 -58.49 -0.70 -8.93 15 16 N 0.01 0.27 13.43 37.02 0.50 0.77 15 17 N -0.27 -4.00 8.45 37.02 0.31 -3.69 15 18 H 0.49 2.30 8.96 -340.37 -3.05 -0.76 15 19 N -0.29 -6.17 12.90 -58.47 -0.75 -6.92 15 20 H 0.27 15.09 8.31 -92.71 -0.77 14.32 15 21 H 0.07 2.53 8.14 -2.39 -0.02 2.51 15 22 H 0.07 2.53 8.14 -2.40 -0.02 2.51 15 23 H 0.08 2.33 8.14 -2.39 -0.02 2.31 15 24 H 0.08 2.33 8.14 -2.39 -0.02 2.31 15 25 H 0.10 2.35 8.14 -2.39 -0.02 2.33 15 26 H 0.10 2.35 8.14 -2.39 -0.02 2.33 15 Total: -1.00 -68.80 268.24 0.97 -67.83 By element: Atomic # 1 Polarization: 1.83 SS G_CDS: -1.84 Total: -0.01 kcal Atomic # 6 Polarization: -33.35 SS G_CDS: 3.61 Total: -29.75 kcal Atomic # 7 Polarization: -72.30 SS G_CDS: -0.36 Total: -72.66 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Atomic # 16 Polarization: -8.47 SS G_CDS: -2.46 Total: -10.93 kcal Total: -68.80 0.97 -67.83 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379368842.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.698 kcal (2) G-P(sol) polarization free energy of solvation -68.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds