Wall clock time and date at job start Mon Mar 30 2020 03:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46906 * 110.99793 * 2 1 4 4 C 1.50696 * 109.47351 * 293.95574 * 3 2 1 5 5 H 1.08007 * 119.99780 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00506 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99253 * 359.97438 * 6 4 3 8 8 Si 1.86795 * 120.00341 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47238 * 59.99702 * 8 6 4 10 10 H 1.48503 * 109.47230 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47102 * 299.99648 * 8 6 4 12 12 C 1.46898 * 111.00443 * 123.95328 * 2 1 3 13 13 N 1.46509 * 109.46894 * 81.04432 * 12 2 1 14 14 C 1.44532 * 120.61323 * 269.74887 * 13 12 2 15 15 C 1.53432 * 111.71629 * 179.84233 * 14 13 12 16 16 S 1.82076 * 103.93199 * 0.37019 * 15 14 13 17 17 C 1.33000 * 120.61031 * 90.02505 * 13 12 2 18 18 S 1.71202 * 125.20356 * 0.02562 * 17 13 12 19 19 H 1.09002 * 109.47401 * 59.99808 * 1 2 3 20 20 H 1.09001 * 109.46874 * 299.99821 * 1 2 3 21 21 H 1.09004 * 109.46970 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.46995 * 53.95554 * 3 2 1 23 23 H 1.09001 * 109.46848 * 173.95560 * 3 2 1 24 24 H 0.96999 * 119.99606 * 179.97438 * 7 6 4 25 25 H 1.08994 * 109.47332 * 201.04403 * 12 2 1 26 26 H 1.08996 * 109.46821 * 321.05149 * 12 2 1 27 27 H 1.08998 * 109.04495 * 300.61493 * 14 13 12 28 28 H 1.08998 * 109.04255 * 59.43321 * 14 13 12 29 29 H 1.08999 * 110.72024 * 241.67317 * 15 14 13 30 30 H 1.08994 * 110.47907 * 118.95128 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 -1.2984 5 1 1.0738 1.5116 -2.0484 6 6 2.0275 3.3493 -1.5289 7 7 2.7127 4.0016 -0.6153 8 14 1.5825 4.1870 -3.1380 9 1 0.1052 4.2245 -3.2846 10 1 2.1147 5.5734 -3.1381 11 1 2.1732 3.4295 -4.2705 12 6 1.9956 -0.7659 1.1375 13 7 1.9698 -2.1954 0.8175 14 6 0.8120 -3.0000 1.1351 15 6 1.0023 -4.4617 0.7092 16 16 2.6722 -4.4933 -0.0156 17 6 3.0137 -2.7777 0.2343 18 16 4.4667 -1.9865 -0.2057 19 1 -0.3634 0.5139 -0.8900 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.5611 1.9274 0.8309 23 1 3.0797 1.3445 0.1082 24 1 2.9879 4.9175 -0.7776 25 1 3.0211 -0.4573 1.3399 26 1 1.3797 -0.5795 2.0173 27 1 0.6352 -2.9603 2.2099 28 1 -0.0570 -2.5922 0.6187 29 1 0.2576 -4.7470 -0.0338 30 1 0.9489 -5.1213 1.5753 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379388748.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:29 Heat of formation + Delta-G solvation = 41.883298 kcal Electronic energy + Delta-G solvation = -13977.148801 eV Core-core repulsion = 11639.815762 eV Total energy + Delta-G solvation = -2337.333039 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 246.056 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.55397 -36.03718 -32.58310 -31.76906 -28.12296 -27.08184 -25.96030 -23.69967 -21.83447 -20.74343 -18.56577 -17.05860 -16.71933 -16.13934 -15.04706 -14.88171 -14.43846 -14.13697 -13.68345 -13.41164 -13.06971 -12.73382 -12.18767 -11.91927 -11.66184 -11.19803 -11.13496 -10.94826 -10.76482 -10.73150 -10.56296 -9.96759 -9.35978 -8.50519 -8.42020 -7.68750 -7.52652 -7.20438 -6.04300 -4.05906 0.79975 0.96006 1.56707 2.31783 2.76511 3.33400 3.38212 3.41609 3.83508 4.23166 4.40954 4.79102 4.86660 4.93400 5.03915 5.08793 5.32158 5.67767 5.80918 5.97459 6.20371 6.43992 6.52528 7.11846 7.14998 7.68661 7.93552 8.04682 8.39957 8.98638 9.57811 11.06551 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.033651 B = 0.006188 C = 0.005787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.870964 B = 4523.561375 C = 4837.232254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.542 5.542 3 C 0.202 3.798 4 C -0.509 4.509 5 H 0.062 0.938 6 C 0.058 3.942 7 N -0.896 5.896 8 Si 0.899 3.101 9 H -0.278 1.278 10 H -0.287 1.287 11 H -0.275 1.275 12 C 0.262 3.738 13 N -0.519 5.519 14 C 0.077 3.923 15 C -0.126 4.126 16 S -0.073 6.073 17 C 0.331 3.669 18 S -0.472 6.472 19 H 0.081 0.919 20 H 0.018 0.982 21 H 0.039 0.961 22 H -0.005 1.005 23 H 0.042 0.958 24 H 0.263 0.737 25 H 0.118 0.882 26 H 0.060 0.940 27 H 0.097 0.903 28 H 0.103 0.897 29 H 0.119 0.881 30 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.279 -15.866 6.321 18.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.267 5.267 3 C 0.078 3.922 4 C -0.547 4.547 5 H 0.080 0.920 6 C -0.144 4.144 7 N -0.535 5.535 8 Si 0.727 3.273 9 H -0.204 1.204 10 H -0.213 1.213 11 H -0.201 1.201 12 C 0.048 3.952 13 N -0.224 5.224 14 C -0.050 4.050 15 C -0.277 4.277 16 S 0.156 5.844 17 C -0.033 4.033 18 S -0.341 6.341 19 H 0.099 0.901 20 H 0.037 0.963 21 H 0.058 0.942 22 H 0.012 0.988 23 H 0.060 0.940 24 H 0.072 0.928 25 H 0.136 0.864 26 H 0.078 0.922 27 H 0.115 0.885 28 H 0.121 0.879 29 H 0.137 0.863 30 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -5.643 -16.225 5.257 17.965 hybrid contribution -2.078 1.412 0.555 2.573 sum -7.721 -14.813 5.812 17.686 Atomic orbital electron populations 1.22402 0.88591 0.98737 1.01797 1.61766 1.06896 1.18962 1.39060 1.19750 0.96175 0.79255 0.97057 1.21009 1.35317 0.96864 1.01529 0.92023 1.24952 0.95144 0.97287 0.96993 1.69937 1.37935 1.11589 1.34072 0.86538 0.78504 0.78379 0.83860 1.20389 1.21272 1.20056 1.22535 1.04126 0.76100 0.92472 1.47584 1.11992 1.11649 1.51176 1.21993 0.90122 0.89600 1.03315 1.24436 0.99018 0.98502 1.05779 1.87288 1.15979 1.07339 1.73821 1.27766 0.94432 0.96275 0.84830 1.93129 1.11517 1.68825 1.60602 0.90061 0.96325 0.94214 0.98771 0.93953 0.92757 0.86370 0.92223 0.88479 0.87924 0.86293 0.86328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 9.20 60.07 0.55 1.12 16 2 N -0.54 -11.09 4.85 -248.30 -1.20 -12.30 16 3 C 0.20 5.13 4.68 -4.97 -0.02 5.11 16 4 C -0.51 -14.20 8.52 -34.44 -0.29 -14.50 16 5 H 0.06 1.71 7.10 -52.48 -0.37 1.34 16 6 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 7 N -0.90 -26.61 13.29 55.43 0.74 -25.87 16 8 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 9 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 C 0.26 4.40 5.25 -63.31 -0.33 4.07 16 13 N -0.52 -7.44 2.99 -179.10 -0.54 -7.98 16 14 C 0.08 0.69 6.59 -4.87 -0.03 0.66 16 15 C -0.13 -0.92 7.42 37.38 0.28 -0.64 16 16 S -0.07 -0.90 23.24 -107.50 -2.50 -3.40 16 17 C 0.33 5.49 7.47 53.27 0.40 5.89 16 18 S -0.47 -10.06 29.56 -107.50 -3.18 -13.24 16 19 H 0.08 1.56 6.86 -51.93 -0.36 1.21 16 20 H 0.02 0.30 8.13 -51.93 -0.42 -0.12 16 21 H 0.04 0.55 5.43 -51.93 -0.28 0.26 16 22 H -0.01 -0.14 8.12 -51.93 -0.42 -0.57 16 23 H 0.04 1.19 7.80 -51.93 -0.40 0.79 16 24 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 25 H 0.12 2.26 6.49 -51.93 -0.34 1.92 16 26 H 0.06 0.84 7.85 -51.93 -0.41 0.44 16 27 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.10 0.89 5.71 -51.93 -0.30 0.59 16 29 H 0.12 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.12 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 275.60 15.07 4.15 4.15 Total: -1.00 -33.16 275.60 -10.80 -43.96 By element: Atomic # 1 Polarization: -1.70 SS G_CDS: -3.70 Total: -5.41 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: 0.45 Total: 3.27 kcal Atomic # 7 Polarization: -45.14 SS G_CDS: -1.00 Total: -46.15 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: -10.96 SS G_CDS: -5.68 Total: -16.64 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -33.16 -10.80 -43.96 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379388748.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.847 kcal (2) G-P(sol) polarization free energy of solvation -33.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds