Wall clock time and date at job start Mon Mar 30 2020 03:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46906 * 110.99793 * 2 1 4 4 C 1.50696 * 109.47351 * 293.95574 * 3 2 1 5 5 H 1.08007 * 119.99780 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00506 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99253 * 359.97438 * 6 4 3 8 8 Si 1.86795 * 120.00341 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47238 * 59.99702 * 8 6 4 10 10 H 1.48503 * 109.47230 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47102 * 299.99648 * 8 6 4 12 12 C 1.46898 * 111.00443 * 123.95328 * 2 1 3 13 13 N 1.46509 * 109.46894 * 81.04432 * 12 2 1 14 14 C 1.44532 * 120.61323 * 269.74887 * 13 12 2 15 15 C 1.53432 * 111.71629 * 179.84233 * 14 13 12 16 16 S 1.82076 * 103.93199 * 0.37019 * 15 14 13 17 17 C 1.33000 * 120.61031 * 90.02505 * 13 12 2 18 18 S 1.71202 * 125.20356 * 0.02562 * 17 13 12 19 19 H 1.09002 * 109.47401 * 59.99808 * 1 2 3 20 20 H 1.09001 * 109.46874 * 299.99821 * 1 2 3 21 21 H 1.09004 * 109.46970 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.46995 * 53.95554 * 3 2 1 23 23 H 1.09001 * 109.46848 * 173.95560 * 3 2 1 24 24 H 0.96999 * 119.99606 * 179.97438 * 7 6 4 25 25 H 1.08994 * 109.47332 * 201.04403 * 12 2 1 26 26 H 1.08996 * 109.46821 * 321.05149 * 12 2 1 27 27 H 1.08998 * 109.04495 * 300.61493 * 14 13 12 28 28 H 1.08998 * 109.04255 * 59.43321 * 14 13 12 29 29 H 1.08999 * 110.72024 * 241.67317 * 15 14 13 30 30 H 1.08994 * 110.47907 * 118.95128 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 -1.2984 5 1 1.0738 1.5116 -2.0484 6 6 2.0275 3.3493 -1.5289 7 7 2.7127 4.0016 -0.6153 8 14 1.5825 4.1870 -3.1380 9 1 0.1052 4.2245 -3.2846 10 1 2.1147 5.5734 -3.1381 11 1 2.1732 3.4295 -4.2705 12 6 1.9956 -0.7659 1.1375 13 7 1.9698 -2.1954 0.8175 14 6 0.8120 -3.0000 1.1351 15 6 1.0023 -4.4617 0.7092 16 16 2.6722 -4.4933 -0.0156 17 6 3.0137 -2.7777 0.2343 18 16 4.4667 -1.9865 -0.2057 19 1 -0.3634 0.5139 -0.8900 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.5611 1.9274 0.8309 23 1 3.0797 1.3445 0.1082 24 1 2.9879 4.9175 -0.7776 25 1 3.0211 -0.4573 1.3399 26 1 1.3797 -0.5795 2.0173 27 1 0.6352 -2.9603 2.2099 28 1 -0.0570 -2.5922 0.6187 29 1 0.2576 -4.7470 -0.0338 30 1 0.9489 -5.1213 1.5753 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379388748.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:29 Heat of formation + Delta-G solvation = 17.594625 kcal Electronic energy + Delta-G solvation = -13978.202037 eV Core-core repulsion = 11639.815762 eV Total energy + Delta-G solvation = -2338.386275 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 246.056 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.78891 -37.62692 -34.63914 -32.70414 -29.85811 -28.63822 -27.28047 -25.26678 -23.06758 -22.37734 -19.74718 -18.68340 -17.98678 -17.68853 -16.69553 -16.25637 -15.78873 -15.69360 -14.88750 -14.70041 -14.24240 -14.00273 -13.69400 -13.36808 -13.04814 -12.91034 -12.61759 -12.58774 -12.45586 -12.23528 -11.95330 -11.79976 -11.43141 -10.63104 -9.55161 -9.22036 -9.03945 -8.81046 -8.21849 -6.31676 -0.51631 -0.19207 0.67307 1.05467 1.38244 1.43077 1.49335 1.53078 2.38857 3.06679 3.11197 3.24597 3.70443 3.73683 4.11237 4.30463 4.38427 4.49745 4.55184 4.66284 4.88278 4.99638 5.11754 5.25736 5.36631 5.58941 5.98459 6.21458 6.44233 6.81401 7.37105 8.88892 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.033651 B = 0.006188 C = 0.005787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.870964 B = 4523.561375 C = 4837.232254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.558 5.558 3 C 0.223 3.777 4 C -0.523 4.523 5 H 0.060 0.940 6 C 0.003 3.997 7 N -0.932 5.932 8 Si 0.967 3.033 9 H -0.261 1.261 10 H -0.282 1.282 11 H -0.276 1.276 12 C 0.266 3.734 13 N -0.505 5.505 14 C 0.060 3.940 15 C -0.111 4.111 16 S -0.044 6.044 17 C 0.346 3.654 18 S -0.636 6.636 19 H 0.057 0.943 20 H 0.029 0.971 21 H 0.085 0.915 22 H -0.021 1.021 23 H -0.002 1.002 24 H 0.265 0.735 25 H 0.084 0.916 26 H 0.101 0.899 27 H 0.139 0.861 28 H 0.120 0.880 29 H 0.150 0.850 30 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.188 -18.425 6.853 22.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.284 5.284 3 C 0.097 3.903 4 C -0.561 4.561 5 H 0.078 0.922 6 C -0.195 4.195 7 N -0.572 5.572 8 Si 0.792 3.208 9 H -0.185 1.185 10 H -0.207 1.207 11 H -0.202 1.202 12 C 0.051 3.949 13 N -0.205 5.205 14 C -0.064 4.064 15 C -0.261 4.261 16 S 0.186 5.814 17 C -0.024 4.024 18 S -0.505 6.505 19 H 0.076 0.924 20 H 0.047 0.953 21 H 0.103 0.897 22 H -0.004 1.004 23 H 0.016 0.984 24 H 0.073 0.927 25 H 0.102 0.898 26 H 0.118 0.882 27 H 0.157 0.843 28 H 0.138 0.862 29 H 0.168 0.832 30 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -9.613 -18.837 5.809 21.931 hybrid contribution -1.125 1.960 0.521 2.320 sum -10.738 -16.876 6.330 20.981 Atomic orbital electron populations 1.22434 0.86117 1.01453 1.01175 1.61524 1.09045 1.16344 1.41473 1.19229 0.93532 0.82006 0.95553 1.21354 1.35090 0.97313 1.02388 0.92171 1.25873 0.94969 0.98125 1.00556 1.70069 1.39053 1.11952 1.36167 0.85468 0.79059 0.77150 0.79128 1.18540 1.20733 1.20195 1.22360 1.02982 0.76975 0.92609 1.47816 1.12789 1.11275 1.48650 1.22553 0.87698 0.89854 1.06313 1.24874 0.95318 0.97901 1.07989 1.87251 1.19964 1.01471 1.72702 1.27662 0.92839 0.98418 0.83513 1.93459 1.17046 1.72672 1.67369 0.92408 0.95266 0.89704 1.00382 0.98354 0.92658 0.89788 0.88194 0.84289 0.86188 0.83156 0.82049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.14 9.20 127.69 1.17 2.32 16 2 N -0.56 -22.85 4.85 -939.48 -4.56 -27.41 16 3 C 0.22 11.85 4.68 85.55 0.40 12.25 16 4 C -0.52 -30.04 8.52 25.60 0.22 -29.83 16 5 H 0.06 3.39 7.10 -2.91 -0.02 3.37 16 6 C 0.00 0.18 5.46 84.65 0.46 0.64 16 7 N -0.93 -57.23 13.29 21.45 0.28 -56.95 16 8 Si 0.97 45.37 29.54 68.60 2.03 47.40 16 9 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 10 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 11 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 12 C 0.27 8.73 5.25 170.80 0.90 9.63 16 13 N -0.50 -13.13 2.99 -720.56 -2.15 -15.28 16 14 C 0.06 0.70 6.59 86.89 0.57 1.27 16 15 C -0.11 -0.82 7.42 72.13 0.54 -0.28 16 16 S -0.04 -0.95 23.24 -56.49 -1.31 -2.26 16 17 C 0.35 11.30 7.47 130.07 0.97 12.27 16 18 S -0.64 -29.53 29.56 -56.49 -1.67 -31.20 16 19 H 0.06 2.14 6.86 -2.39 -0.02 2.12 16 20 H 0.03 0.88 8.13 -2.39 -0.02 0.86 16 21 H 0.08 1.91 5.43 -2.38 -0.01 1.90 16 22 H -0.02 -1.18 8.12 -2.39 -0.02 -1.20 16 23 H 0.00 -0.10 7.80 -2.39 -0.02 -0.12 16 24 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 25 H 0.08 3.43 6.49 -2.39 -0.02 3.41 16 26 H 0.10 2.52 7.85 -2.39 -0.02 2.50 16 27 H 0.14 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.12 1.17 5.71 -2.39 -0.01 1.15 16 29 H 0.15 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.16 0.09 8.14 -2.39 -0.02 0.07 16 Total: -1.00 -81.82 275.60 -1.02 -82.84 By element: Atomic # 1 Polarization: -6.55 SS G_CDS: 1.14 Total: -5.41 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: 5.23 Total: 8.27 kcal Atomic # 7 Polarization: -93.21 SS G_CDS: -6.43 Total: -99.64 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Atomic # 16 Polarization: -30.48 SS G_CDS: -2.98 Total: -33.46 kcal Total: -81.82 -1.02 -82.84 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379388748.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.430 kcal (2) G-P(sol) polarization free energy of solvation -81.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds