Wall clock time and date at job start Mon Mar 30 2020 03:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39353 * 120.21410 * 26.71069 * 3 2 1 5 5 C 1.38123 * 119.99377 * 179.70542 * 4 3 2 6 6 C 1.38450 * 120.43187 * 0.55051 * 5 4 3 7 7 C 1.50697 * 119.77907 * 179.72393 * 6 5 4 8 8 H 1.09001 * 109.46613 * 199.72661 * 7 6 5 9 9 N 1.46906 * 109.46982 * 319.72448 * 7 6 5 10 10 C 1.50698 * 109.47576 * 79.72695 * 7 6 5 11 11 H 1.08004 * 119.99528 * 359.97438 * 10 7 6 12 12 C 1.37876 * 120.00356 * 180.02562 * 10 7 6 13 13 N 1.31512 * 120.00020 * 179.97438 * 12 10 7 14 14 Si 1.86803 * 119.99603 * 359.97438 * 12 10 7 15 15 H 1.48495 * 109.47195 * 90.00782 * 14 12 10 16 16 H 1.48502 * 109.46875 * 210.00223 * 14 12 10 17 17 H 1.48493 * 109.47388 * 330.00132 * 14 12 10 18 18 C 1.38108 * 120.43708 * 359.44408 * 6 5 4 19 19 C 1.39366 * 119.99195 * 0.27827 * 18 6 5 20 20 C 1.47691 * 120.20973 * 180.02562 * 19 18 6 21 21 O 1.21468 * 119.99663 * 180.02562 * 20 19 18 22 22 O 1.34717 * 120.00381 * 359.97438 * 20 19 18 23 23 H 1.07998 * 119.99888 * 359.97438 * 4 3 2 24 24 H 1.07995 * 119.78125 * 180.28985 * 5 4 3 25 25 H 1.00896 * 111.00309 * 60.00059 * 9 7 6 26 26 H 1.00902 * 110.99923 * 183.96223 * 9 7 6 27 27 H 0.97000 * 119.99684 * 179.97438 * 13 12 10 28 28 H 1.07995 * 120.00286 * 180.29657 * 18 6 5 29 29 H 0.96703 * 117.00091 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2697 -1.0748 -0.5413 5 6 4.6509 -1.0666 -0.5444 6 6 5.3471 0.0000 -0.0019 7 6 6.8541 -0.0093 -0.0075 8 1 7.2244 0.6933 0.7391 9 7 7.3366 -1.3601 0.3094 10 6 7.3539 0.3959 -1.3702 11 1 6.6506 0.6358 -2.1540 12 6 8.7090 0.4595 -1.6167 13 7 9.1452 0.8126 -2.8061 14 14 9.9253 0.0439 -0.2611 15 1 10.2375 -1.4072 -0.3040 16 1 11.1729 0.8246 -0.4592 17 1 9.3326 0.3841 1.0572 18 6 4.6697 1.0751 0.5391 19 6 3.2762 1.0883 0.5466 20 6 2.5469 2.2357 1.1234 21 8 1.3322 2.2429 1.1283 22 8 3.2287 3.2739 1.6451 23 1 2.7336 -1.9125 -0.9622 24 1 5.1913 -1.8997 -0.9690 25 1 7.0064 -2.0304 -0.3687 26 1 8.3433 -1.3783 0.3753 27 1 10.0985 0.8576 -2.9793 28 1 5.2199 1.9056 0.9561 29 1 2.7078 4.0017 2.0114 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380635986.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:01 Heat of formation + Delta-G solvation = -30.020971 kcal Electronic energy + Delta-G solvation = -16787.549459 eV Core-core repulsion = 13868.901594 eV Total energy + Delta-G solvation = -2918.647865 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.50608 -38.89584 -36.61997 -35.86312 -34.99752 -32.16631 -31.36968 -30.44018 -26.56489 -24.96377 -23.53495 -22.02324 -20.35519 -18.72592 -18.03363 -17.23025 -16.53520 -15.89568 -15.65639 -15.09871 -14.62048 -14.20704 -13.83823 -13.68620 -13.21443 -13.07724 -12.78129 -12.46041 -12.24679 -12.03961 -11.70028 -11.55472 -11.42507 -10.95646 -10.86949 -10.42513 -10.30774 -9.73180 -8.96971 -8.93291 -8.58914 -7.71932 -6.38529 -4.44891 0.56337 1.26126 2.61644 2.89580 3.02194 3.02449 3.16251 3.18840 3.25212 4.03869 4.08482 4.09256 4.79544 4.94645 5.05413 5.17345 5.47612 5.57922 5.71915 5.80938 6.00382 6.21405 6.38867 6.43034 6.53698 6.84943 7.05352 7.25091 7.74053 7.84609 7.86011 8.05994 8.27531 8.67065 9.18672 10.73416 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.031798 B = 0.006245 C = 0.005725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.345616 B = 4482.851184 C = 4889.567523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C 0.261 3.739 3 C 0.007 3.993 4 C -0.081 4.081 5 C -0.071 4.071 6 C -0.003 4.003 7 C 0.202 3.798 8 H 0.058 0.942 9 N -0.849 5.849 10 C -0.553 4.553 11 H 0.079 0.921 12 C 0.077 3.923 13 N -0.883 5.883 14 Si 0.872 3.128 15 H -0.274 1.274 16 H -0.289 1.289 17 H -0.257 1.257 18 C -0.059 4.059 19 C -0.092 4.092 20 C 0.526 3.474 21 O -0.511 6.511 22 O -0.505 6.505 23 H 0.137 0.863 24 H 0.140 0.860 25 H 0.332 0.668 26 H 0.322 0.678 27 H 0.269 0.731 28 H 0.146 0.854 29 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.385 -0.928 6.845 8.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.090 5.090 2 C -0.054 4.054 3 C 0.003 3.997 4 C -0.101 4.101 5 C -0.090 4.090 6 C -0.005 4.005 7 C 0.093 3.907 8 H 0.076 0.924 9 N -0.383 5.383 10 C -0.593 4.593 11 H 0.098 0.902 12 C -0.128 4.128 13 N -0.519 5.519 14 Si 0.700 3.300 15 H -0.200 1.200 16 H -0.216 1.216 17 H -0.182 1.182 18 C -0.078 4.078 19 C -0.095 4.095 20 C 0.371 3.629 21 O -0.401 6.401 22 O -0.316 6.316 23 H 0.155 0.845 24 H 0.158 0.842 25 H 0.145 0.855 26 H 0.138 0.862 27 H 0.079 0.921 28 H 0.164 0.836 29 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -7.478 -1.109 7.256 10.479 hybrid contribution 1.437 0.503 -0.206 1.536 sum -6.041 -0.606 7.050 9.305 Atomic orbital electron populations 1.81088 1.12065 1.08003 1.07832 1.25337 0.92450 0.93454 0.94125 1.15712 0.84401 0.95928 1.03640 1.21093 0.94363 0.96579 0.98089 1.21214 0.92583 0.98819 0.96336 1.20338 0.97623 0.91659 0.90858 1.18606 0.86445 0.88618 0.97032 0.92392 1.59739 1.14661 1.08615 1.55321 1.21544 0.93032 1.48686 0.96026 0.90245 1.25018 0.98278 0.94125 0.95397 1.69878 1.15085 1.45931 1.21011 0.87027 0.81247 0.78598 0.83120 1.20016 1.21603 1.18197 1.21323 0.91269 0.98680 0.96480 1.18837 0.93678 0.92467 1.04558 1.20893 0.85370 0.82057 0.74587 1.90925 1.14966 1.79501 1.54674 1.84593 1.44651 1.30625 1.71745 0.84472 0.84248 0.85527 0.86191 0.92119 0.83625 0.72856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -7.49 18.41 41.84 0.77 -6.72 15 2 C 0.26 4.29 12.76 -22.48 -0.29 4.01 15 3 C 0.01 0.10 5.76 -106.58 -0.61 -0.51 15 4 C -0.08 -1.06 9.74 -39.21 -0.38 -1.44 15 5 C -0.07 -1.04 9.26 -39.55 -0.37 -1.41 15 6 C 0.00 -0.06 4.90 -104.59 -0.51 -0.57 15 7 C 0.20 4.02 2.47 -70.02 -0.17 3.84 15 8 H 0.06 1.19 7.05 -51.93 -0.37 0.82 15 9 N -0.85 -15.70 8.97 -6.65 -0.06 -15.76 15 10 C -0.55 -13.40 9.28 -34.44 -0.32 -13.72 15 11 H 0.08 2.13 7.98 -52.48 -0.42 1.71 15 12 C 0.08 1.95 5.47 -17.82 -0.10 1.86 15 13 N -0.88 -24.42 13.96 55.43 0.77 -23.65 15 14 Si 0.87 18.80 24.61 -169.99 -4.18 14.62 15 15 H -0.27 -5.66 7.01 56.52 0.40 -5.27 15 16 H -0.29 -6.42 7.11 56.52 0.40 -6.02 15 17 H -0.26 -5.32 6.54 56.52 0.37 -4.95 15 18 C -0.06 -0.91 9.22 -39.21 -0.36 -1.27 15 19 C -0.09 -1.38 5.90 -104.64 -0.62 -2.00 15 20 C 0.53 7.69 8.24 34.59 0.29 7.98 15 21 O -0.51 -8.79 15.11 -19.24 -0.29 -9.08 15 22 O -0.50 -5.71 12.68 -40.54 -0.51 -6.22 15 23 H 0.14 1.41 8.06 -52.49 -0.42 0.98 15 24 H 0.14 1.87 6.64 -52.49 -0.35 1.52 15 25 H 0.33 5.63 7.32 -39.29 -0.29 5.34 15 26 H 0.32 6.22 4.30 -39.29 -0.17 6.05 15 27 H 0.27 6.99 8.31 -40.82 -0.34 6.66 15 28 H 0.15 2.12 7.58 -52.49 -0.40 1.73 15 29 H 0.41 2.65 9.11 45.56 0.42 3.06 15 LS Contribution 263.77 15.07 3.97 3.97 Total: -1.00 -30.30 263.77 -4.14 -34.44 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -1.17 Total: 11.64 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: -3.44 Total: -3.23 kcal Atomic # 7 Polarization: -47.61 SS G_CDS: 1.48 Total: -46.13 kcal Atomic # 8 Polarization: -14.50 SS G_CDS: -0.80 Total: -15.31 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -4.18 Total: 14.62 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -30.30 -4.14 -34.44 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380635986.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.416 kcal (2) G-P(sol) polarization free energy of solvation -30.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds