Wall clock time and date at job start Mon Mar 30 2020 03:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39353 * 120.21410 * 26.71069 * 3 2 1 5 5 C 1.38123 * 119.99377 * 179.70542 * 4 3 2 6 6 C 1.38450 * 120.43187 * 0.55051 * 5 4 3 7 7 C 1.50697 * 119.77907 * 179.72393 * 6 5 4 8 8 H 1.09001 * 109.46613 * 199.72661 * 7 6 5 9 9 N 1.46906 * 109.46982 * 319.72448 * 7 6 5 10 10 C 1.50698 * 109.47576 * 79.72695 * 7 6 5 11 11 H 1.08004 * 119.99528 * 359.97438 * 10 7 6 12 12 C 1.37876 * 120.00356 * 180.02562 * 10 7 6 13 13 N 1.31512 * 120.00020 * 179.97438 * 12 10 7 14 14 Si 1.86803 * 119.99603 * 359.97438 * 12 10 7 15 15 H 1.48495 * 109.47195 * 90.00782 * 14 12 10 16 16 H 1.48502 * 109.46875 * 210.00223 * 14 12 10 17 17 H 1.48493 * 109.47388 * 330.00132 * 14 12 10 18 18 C 1.38108 * 120.43708 * 359.44408 * 6 5 4 19 19 C 1.39366 * 119.99195 * 0.27827 * 18 6 5 20 20 C 1.47691 * 120.20973 * 180.02562 * 19 18 6 21 21 O 1.21468 * 119.99663 * 180.02562 * 20 19 18 22 22 O 1.34717 * 120.00381 * 359.97438 * 20 19 18 23 23 H 1.07998 * 119.99888 * 359.97438 * 4 3 2 24 24 H 1.07995 * 119.78125 * 180.28985 * 5 4 3 25 25 H 1.00896 * 111.00309 * 60.00059 * 9 7 6 26 26 H 1.00902 * 110.99923 * 183.96223 * 9 7 6 27 27 H 0.97000 * 119.99684 * 179.97438 * 13 12 10 28 28 H 1.07995 * 120.00286 * 180.29657 * 18 6 5 29 29 H 0.96703 * 117.00091 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2697 -1.0748 -0.5413 5 6 4.6509 -1.0666 -0.5444 6 6 5.3471 0.0000 -0.0019 7 6 6.8541 -0.0093 -0.0075 8 1 7.2244 0.6933 0.7391 9 7 7.3366 -1.3601 0.3094 10 6 7.3539 0.3959 -1.3702 11 1 6.6506 0.6358 -2.1540 12 6 8.7090 0.4595 -1.6167 13 7 9.1452 0.8126 -2.8061 14 14 9.9253 0.0439 -0.2611 15 1 10.2375 -1.4072 -0.3040 16 1 11.1729 0.8246 -0.4592 17 1 9.3326 0.3841 1.0572 18 6 4.6697 1.0751 0.5391 19 6 3.2762 1.0883 0.5466 20 6 2.5469 2.2357 1.1234 21 8 1.3322 2.2429 1.1283 22 8 3.2287 3.2739 1.6451 23 1 2.7336 -1.9125 -0.9622 24 1 5.1913 -1.8997 -0.9690 25 1 7.0064 -2.0304 -0.3687 26 1 8.3433 -1.3783 0.3753 27 1 10.0985 0.8576 -2.9793 28 1 5.2199 1.9056 0.9561 29 1 2.7078 4.0017 2.0114 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380635986.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:01 Heat of formation + Delta-G solvation = -52.674144 kcal Electronic energy + Delta-G solvation = -16788.531774 eV Core-core repulsion = 13868.901594 eV Total energy + Delta-G solvation = -2919.630180 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.66064 -40.09226 -37.91362 -37.01547 -36.50559 -33.98490 -32.53335 -31.78158 -28.22921 -26.29583 -24.88896 -23.25820 -21.72622 -19.91557 -19.22787 -18.94363 -17.82650 -17.33015 -16.79099 -16.46433 -16.15570 -15.37325 -15.29944 -14.95644 -14.65160 -14.31637 -14.26259 -13.89001 -13.64298 -13.49835 -13.04248 -12.81722 -12.65159 -12.58824 -12.40012 -11.85404 -11.64479 -11.49913 -10.84736 -10.10525 -9.89611 -9.28530 -8.32932 -6.42258 -0.64285 0.09505 1.32707 1.42518 1.46586 1.49667 1.66058 1.95709 1.97717 2.28378 2.79716 2.86999 3.01590 3.65253 3.88468 4.03898 4.26508 4.34695 4.38844 4.57860 4.83589 4.96750 5.15888 5.21901 5.40833 5.48584 5.64974 5.75191 6.09672 6.41379 6.46758 6.63265 6.79363 6.89707 7.25264 8.82463 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.031798 B = 0.006245 C = 0.005725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.345616 B = 4482.851184 C = 4889.567523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C 0.277 3.723 3 C 0.003 3.997 4 C -0.061 4.061 5 C -0.070 4.070 6 C -0.026 4.026 7 C 0.208 3.792 8 H 0.055 0.945 9 N -0.838 5.838 10 C -0.546 4.546 11 H 0.041 0.959 12 C 0.021 3.979 13 N -0.937 5.937 14 Si 0.932 3.068 15 H -0.256 1.256 16 H -0.301 1.301 17 H -0.240 1.240 18 C -0.057 4.057 19 C -0.096 4.096 20 C 0.532 3.468 21 O -0.541 6.541 22 O -0.496 6.496 23 H 0.172 0.828 24 H 0.153 0.847 25 H 0.342 0.658 26 H 0.319 0.681 27 H 0.267 0.733 28 H 0.152 0.848 29 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.476 -1.837 8.273 10.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.122 5.122 2 C -0.038 4.038 3 C -0.001 4.001 4 C -0.081 4.081 5 C -0.088 4.088 6 C -0.027 4.027 7 C 0.098 3.902 8 H 0.073 0.927 9 N -0.372 5.372 10 C -0.586 4.586 11 H 0.059 0.941 12 C -0.179 4.179 13 N -0.576 5.576 14 Si 0.758 3.242 15 H -0.181 1.181 16 H -0.228 1.228 17 H -0.164 1.164 18 C -0.075 4.075 19 C -0.099 4.099 20 C 0.378 3.622 21 O -0.433 6.433 22 O -0.309 6.309 23 H 0.189 0.811 24 H 0.170 0.830 25 H 0.156 0.844 26 H 0.135 0.865 27 H 0.077 0.923 28 H 0.170 0.830 29 H 0.297 0.703 Dipole moment (debyes) X Y Z Total from point charges -7.586 -2.015 8.714 11.728 hybrid contribution 1.397 0.840 -0.676 1.765 sum -6.189 -1.175 8.038 10.213 Atomic orbital electron populations 1.81099 1.13044 1.09094 1.09005 1.25499 0.92605 0.92496 0.93176 1.15866 0.83678 0.96556 1.03984 1.21356 0.93665 0.96712 0.96350 1.21373 0.93269 0.98499 0.95673 1.20200 0.96137 0.93327 0.93057 1.18418 0.88544 0.89081 0.94135 0.92692 1.59687 1.14348 1.07845 1.55337 1.21803 0.92297 1.47166 0.97307 0.94094 1.25840 1.00422 0.94255 0.97399 1.70038 1.15355 1.48625 1.23537 0.86041 0.78231 0.79108 0.80816 1.18103 1.22837 1.16364 1.21310 0.91425 0.98467 0.96327 1.18908 0.93500 0.92907 1.04629 1.20800 0.84828 0.82435 0.74143 1.90924 1.16104 1.80210 1.56063 1.84548 1.44642 1.30659 1.71074 0.81091 0.82958 0.84434 0.86544 0.92342 0.83016 0.70266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -15.66 18.41 19.00 0.35 -15.31 15 2 C 0.28 8.65 12.76 88.33 1.13 9.78 15 3 C 0.00 0.08 5.76 -21.13 -0.12 -0.04 15 4 C -0.06 -1.41 9.74 22.51 0.22 -1.19 15 5 C -0.07 -1.87 9.26 22.29 0.21 -1.67 15 6 C -0.03 -0.83 4.90 -19.85 -0.10 -0.93 15 7 C 0.21 7.94 2.47 43.42 0.11 8.05 15 8 H 0.06 2.14 7.05 -2.39 -0.02 2.13 15 9 N -0.84 -28.82 8.97 -174.95 -1.57 -30.39 15 10 C -0.55 -26.44 9.28 25.60 0.24 -26.20 15 11 H 0.04 2.25 7.98 -2.91 -0.02 2.23 15 12 C 0.02 1.05 5.47 84.65 0.46 1.51 15 13 N -0.94 -52.99 13.96 21.45 0.30 -52.69 15 14 Si 0.93 38.07 24.61 68.60 1.69 39.76 15 15 H -0.26 -9.64 7.01 99.48 0.70 -8.94 15 16 H -0.30 -12.80 7.11 99.48 0.71 -12.09 15 17 H -0.24 -9.04 6.54 99.48 0.65 -8.39 15 18 C -0.06 -1.66 9.22 22.51 0.21 -1.46 15 19 C -0.10 -2.72 5.90 -19.87 -0.12 -2.84 15 20 C 0.53 14.72 8.24 70.32 0.58 15.30 15 21 O -0.54 -17.99 15.11 19.94 0.30 -17.69 15 22 O -0.50 -10.17 12.68 -56.27 -0.71 -10.88 15 23 H 0.17 2.81 8.06 -2.91 -0.02 2.79 15 24 H 0.15 3.65 6.64 -2.91 -0.02 3.64 15 25 H 0.34 10.69 7.32 -89.70 -0.66 10.04 15 26 H 0.32 11.36 4.30 -89.69 -0.39 10.98 15 27 H 0.27 14.29 8.31 -92.71 -0.77 13.52 15 28 H 0.15 4.19 7.58 -2.91 -0.02 4.16 15 29 H 0.43 4.57 9.11 -74.06 -0.67 3.89 15 Total: -1.00 -65.57 263.77 2.63 -62.94 By element: Atomic # 1 Polarization: 24.47 SS G_CDS: -0.54 Total: 23.94 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: 2.81 Total: 0.32 kcal Atomic # 7 Polarization: -97.47 SS G_CDS: -0.92 Total: -98.39 kcal Atomic # 8 Polarization: -28.16 SS G_CDS: -0.41 Total: -28.57 kcal Atomic # 14 Polarization: 38.07 SS G_CDS: 1.69 Total: 39.76 kcal Total: -65.57 2.63 -62.94 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380635986.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.269 kcal (2) G-P(sol) polarization free energy of solvation -65.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds