Wall clock time and date at job start Mon Mar 30 2020 03:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30589 * 1 3 3 Si 1.86800 * 119.99801 * 2 1 4 4 H 1.48509 * 109.46936 * 274.98204 * 3 2 1 5 5 H 1.48500 * 109.47295 * 34.97958 * 3 2 1 6 6 H 1.48497 * 109.47408 * 154.98302 * 3 2 1 7 7 C 1.40225 * 120.00293 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99952 * 186.25090 * 7 2 1 9 9 C 1.41786 * 119.99908 * 6.24560 * 7 2 1 10 10 O 1.21732 * 119.99910 * 353.77616 * 9 7 2 11 11 N 1.34777 * 119.99885 * 173.76730 * 9 7 2 12 12 N 1.40096 * 119.99718 * 180.02562 * 11 9 7 13 13 C 1.30422 * 119.99711 * 180.02562 * 12 11 9 14 14 C 1.46458 * 119.99743 * 179.97438 * 13 12 11 15 15 O 1.21687 * 120.00141 * 359.97438 * 14 13 12 16 16 C 1.47872 * 119.99477 * 179.97438 * 14 13 12 17 17 C 1.39641 * 120.14771 * 180.02562 * 16 14 13 18 18 C 1.37929 * 119.85432 * 179.97438 * 17 16 14 19 19 C 1.38390 * 120.14273 * 359.97299 * 18 17 16 20 20 C 1.38382 * 120.30710 * 0.04718 * 19 18 17 21 21 C 1.37932 * 120.14443 * 359.95321 * 20 19 18 22 22 H 0.96996 * 120.00033 * 0.02562 * 1 2 3 23 23 H 0.96996 * 119.99685 * 0.02562 * 11 9 7 24 24 H 1.08001 * 120.00011 * 359.97438 * 13 12 11 25 25 H 1.08008 * 120.07135 * 359.70032 * 17 16 14 26 26 H 1.07997 * 119.93012 * 179.97438 * 18 17 16 27 27 H 1.08008 * 119.84650 * 180.02562 * 19 18 17 28 28 H 1.07995 * 119.93004 * 179.97438 * 20 19 18 29 29 H 1.08001 * 120.07347 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3059 0.0000 0.0000 3 14 2.2398 1.6178 0.0000 4 1 2.3820 2.1072 -1.3949 5 1 1.4939 2.6200 0.8026 6 1 3.5861 1.4122 0.5920 7 6 2.0071 -1.2143 0.0005 8 1 3.0822 -1.2170 0.1024 9 6 1.3045 -2.4387 -0.1325 10 8 0.0872 -2.4449 -0.1332 11 7 1.9844 -3.5956 -0.2583 12 7 1.2902 -4.8052 -0.3903 13 6 1.9482 -5.9248 -0.5116 14 6 1.2224 -7.1894 -0.6490 15 8 0.0056 -7.1957 -0.6496 16 6 1.9685 -8.4587 -0.7870 17 6 1.2797 -9.6663 -0.9188 18 6 1.9817 -10.8465 -1.0477 19 6 3.3656 -10.8356 -1.0472 20 6 4.0545 -9.6426 -0.9166 21 6 3.3648 -8.4551 -0.7869 22 1 -0.4850 0.8400 -0.0004 23 1 2.9544 -3.5905 -0.2575 24 1 3.0282 -5.9192 -0.5106 25 1 0.1997 -9.6765 -0.9153 26 1 1.4503 -11.7812 -1.1493 27 1 3.9104 -11.7626 -1.1489 28 1 5.1344 -9.6412 -0.9166 29 1 3.9036 -7.5247 -0.6855 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381088765.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:40 Heat of formation + Delta-G solvation = -29.653301 kcal Electronic energy + Delta-G solvation = -15929.699918 eV Core-core repulsion = 13011.067996 eV Total energy + Delta-G solvation = -2918.631921 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.03136 -39.76344 -39.09496 -36.98703 -34.79336 -33.12312 -32.13105 -31.83128 -28.94034 -26.67682 -23.99299 -23.19911 -22.05506 -20.81477 -19.42786 -18.75549 -17.73931 -17.53351 -16.64943 -16.39574 -15.94404 -15.88020 -15.24695 -15.17045 -14.93232 -14.72198 -14.28883 -13.53982 -13.34528 -13.15532 -12.80424 -12.67134 -12.60269 -12.02330 -12.00029 -11.59864 -11.03582 -10.83621 -10.08949 -9.96405 -9.90201 -9.74511 -8.48202 -7.14671 -0.54932 0.46935 0.52338 1.38990 1.41406 1.58684 1.74762 1.95027 2.25384 2.39072 2.93866 3.10953 3.52928 3.87146 3.90603 4.08297 4.30478 4.42217 4.51858 4.60280 4.68848 4.94399 5.12970 5.16266 5.41602 5.50511 5.54569 5.65968 5.93721 6.00125 6.36850 6.63212 6.71413 7.26578 8.31889 8.48722 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.057728 B = 0.003799 C = 0.003570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.920109 B = 7369.236696 C = 7840.458934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.026 3.974 3 Si 1.015 2.985 4 H -0.260 1.260 5 H -0.271 1.271 6 H -0.240 1.240 7 C -0.554 4.554 8 H 0.105 0.895 9 C 0.537 3.463 10 O -0.611 6.611 11 N -0.577 5.577 12 N -0.194 5.194 13 C -0.048 4.048 14 C 0.443 3.557 15 O -0.491 6.491 16 C -0.170 4.170 17 C -0.081 4.081 18 C -0.134 4.134 19 C -0.082 4.082 20 C -0.130 4.130 21 C -0.072 4.072 22 H 0.283 0.717 23 H 0.394 0.606 24 H 0.172 0.828 25 H 0.119 0.881 26 H 0.151 0.849 27 H 0.161 0.839 28 H 0.162 0.838 29 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.162 -17.500 -2.081 23.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.192 4.192 3 Si 0.832 3.168 4 H -0.185 1.185 5 H -0.196 1.196 6 H -0.162 1.162 7 C -0.590 4.590 8 H 0.123 0.877 9 C 0.347 3.653 10 O -0.495 6.495 11 N -0.326 5.326 12 N -0.010 5.010 13 C -0.258 4.258 14 C 0.322 3.678 15 O -0.366 6.366 16 C -0.172 4.172 17 C -0.100 4.100 18 C -0.152 4.152 19 C -0.100 4.100 20 C -0.148 4.148 21 C -0.090 4.090 22 H 0.093 0.907 23 H 0.234 0.766 24 H 0.188 0.812 25 H 0.137 0.863 26 H 0.169 0.831 27 H 0.178 0.822 28 H 0.180 0.820 29 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 12.620 -16.909 -2.015 21.195 hybrid contribution 0.847 0.560 0.004 1.016 sum 13.467 -16.349 -2.011 21.277 Atomic orbital electron populations 1.70174 1.10201 1.30087 1.32622 1.27264 0.95558 1.05642 0.90763 0.84757 0.78939 0.73597 0.79465 1.18475 1.19569 1.16233 1.20561 0.96495 0.89320 1.52626 0.87669 1.17714 0.87376 0.82157 0.78088 1.90633 1.16227 1.85953 1.56682 1.47692 1.08538 1.01991 1.74352 1.74962 1.30189 0.94310 1.01581 1.26227 1.01142 0.91505 1.06938 1.20572 0.87557 0.88147 0.71486 1.90654 1.17811 1.89559 1.38570 1.20102 0.95476 0.92354 1.09261 1.21469 1.00606 0.92165 0.95744 1.21443 0.95281 0.97798 1.00671 1.21894 0.93989 0.99730 0.94402 1.21582 1.01942 0.91511 0.99758 1.21762 0.91575 1.00815 0.94895 0.90659 0.76646 0.81154 0.86329 0.83127 0.82173 0.82030 0.83025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -48.68 11.76 21.87 0.26 -48.43 15 2 C 0.03 1.42 5.49 85.36 0.47 1.89 15 3 Si 1.02 38.56 29.56 68.60 2.03 40.59 15 4 H -0.26 -9.44 7.11 99.48 0.71 -8.74 15 5 H -0.27 -9.98 7.11 99.48 0.71 -9.27 15 6 H -0.24 -8.17 7.11 99.48 0.71 -7.47 15 7 C -0.55 -30.46 9.31 23.63 0.22 -30.24 15 8 H 0.11 4.91 7.86 -2.91 -0.02 4.89 15 9 C 0.54 32.41 7.68 85.12 0.65 33.06 15 10 O -0.61 -43.91 15.24 -4.45 -0.07 -43.98 15 11 N -0.58 -27.95 6.26 -179.96 -1.13 -29.07 15 12 N -0.19 -9.38 10.83 -52.61 -0.57 -9.95 15 13 C -0.05 -1.69 10.37 87.04 0.90 -0.78 15 14 C 0.44 15.43 7.11 26.97 0.19 15.62 15 15 O -0.49 -21.86 16.88 -4.31 -0.07 -21.93 15 16 C -0.17 -4.25 5.88 -20.05 -0.12 -4.37 15 17 C -0.08 -1.86 9.60 22.54 0.22 -1.64 15 18 C -0.13 -2.04 10.03 22.23 0.22 -1.82 15 19 C -0.08 -0.92 10.04 22.34 0.22 -0.70 15 20 C -0.13 -1.54 10.03 22.23 0.22 -1.32 15 21 C -0.07 -1.23 9.45 22.54 0.21 -1.02 15 22 H 0.28 15.30 8.29 -92.71 -0.77 14.54 15 23 H 0.39 14.83 8.62 -213.33 -1.84 13.00 15 24 H 0.17 3.91 6.30 -2.91 -0.02 3.90 15 25 H 0.12 2.98 7.65 -2.91 -0.02 2.96 15 26 H 0.15 1.52 8.06 -2.91 -0.02 1.49 15 27 H 0.16 0.71 8.06 -2.91 -0.02 0.68 15 28 H 0.16 0.87 8.06 -2.91 -0.02 0.85 15 29 H 0.15 1.90 6.23 -2.91 -0.02 1.88 15 Total: -1.00 -88.62 275.96 3.23 -85.39 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: -0.64 Total: 18.70 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: 3.42 Total: 8.68 kcal Atomic # 7 Polarization: -86.01 SS G_CDS: -1.44 Total: -87.45 kcal Atomic # 8 Polarization: -65.77 SS G_CDS: -0.14 Total: -65.91 kcal Atomic # 14 Polarization: 38.56 SS G_CDS: 2.03 Total: 40.59 kcal Total: -88.62 3.23 -85.39 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381088765.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.733 kcal (2) G-P(sol) polarization free energy of solvation -88.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds