Wall clock time and date at job start Mon Mar 30 2020 03:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 120.00007 * 2 1 4 4 H 1.48498 * 109.47082 * 269.99743 * 3 2 1 5 5 H 1.48506 * 109.47030 * 29.99600 * 3 2 1 6 6 H 1.48494 * 109.47255 * 149.99488 * 3 2 1 7 7 C 1.37871 * 119.99635 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99336 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00238 * 0.02562 * 7 2 1 10 10 O 1.42901 * 109.47033 * 179.97438 * 9 7 2 11 11 C 1.42902 * 114.00420 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47551 * 179.97438 * 11 10 9 13 13 S 1.80997 * 109.47169 * 180.02562 * 12 11 10 14 14 C 1.76194 * 100.00044 * 180.02562 * 13 12 11 15 15 N 1.31714 * 127.50935 * 179.97438 * 14 13 12 16 16 C 1.31260 * 116.78187 * 179.97438 * 15 14 13 17 17 N 1.30138 * 117.88262 * 0.25776 * 16 15 14 18 18 S 1.69943 * 105.77223 * 359.63583 * 17 16 15 19 19 H 0.97001 * 120.00061 * 0.02562 * 1 2 3 20 20 H 1.08994 * 109.47574 * 59.99953 * 9 7 2 21 21 H 1.09006 * 109.46953 * 299.99479 * 9 7 2 22 22 H 1.09003 * 109.46461 * 59.99640 * 11 10 9 23 23 H 1.08998 * 109.47317 * 300.00820 * 11 10 9 24 24 H 1.09003 * 109.47015 * 60.00044 * 12 11 10 25 25 H 1.09001 * 109.47163 * 300.00108 * 12 11 10 26 26 H 1.08002 * 121.05453 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 8 2.1796 -3.5853 0.0005 11 6 1.5651 -4.8754 0.0011 12 6 2.6480 -5.9562 0.0004 13 16 1.8696 -7.5902 0.0004 14 6 3.3046 -8.6127 0.0003 15 7 3.3514 -9.9290 0.0008 16 6 4.5435 -10.4784 0.0001 17 7 5.5777 -9.6885 0.0042 18 16 4.9521 -8.1084 -0.0010 19 1 -0.4850 0.8401 -0.0004 20 1 0.6247 -2.5571 -0.8896 21 1 0.6240 -2.5566 0.8904 22 1 0.9446 -4.9826 -0.8886 23 1 0.9452 -4.9822 0.8912 24 1 3.2688 -5.8490 0.8900 25 1 3.2675 -5.8492 -0.8900 26 1 4.6622 -11.5519 0.0008 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385253075.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:48 Heat of formation + Delta-G solvation = -16.702218 kcal Electronic energy + Delta-G solvation = -12564.553424 eV Core-core repulsion = 10088.846832 eV Total energy + Delta-G solvation = -2475.706592 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 246.024 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.05098 -38.75387 -35.01848 -33.49432 -32.67604 -29.20598 -27.68082 -24.77862 -24.25714 -22.19332 -20.22954 -18.68637 -18.33496 -17.66823 -17.15983 -16.54916 -16.38011 -16.22986 -15.30715 -14.88199 -14.77954 -13.95157 -13.43860 -13.19194 -13.07481 -12.88368 -12.60791 -12.54249 -12.13533 -12.03253 -11.77328 -11.28962 -10.90131 -10.89833 -10.69498 -10.29343 -9.03162 -8.31649 -6.43640 -0.94033 -0.39419 -0.30518 0.56801 0.98570 1.42424 1.42970 1.44675 1.56742 2.35835 3.02943 3.10880 3.18049 3.71858 3.90434 4.27611 4.35173 4.56764 4.63448 4.65388 4.87789 5.18019 5.55277 5.94669 6.26521 6.46921 6.78287 7.27765 8.80190 Molecular weight = 246.02amu Principal moments of inertia in cm(-1) A = 0.056802 B = 0.003835 C = 0.003604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.820132 B = 7299.342579 C = 7766.413936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.007 3.993 3 Si 0.981 3.019 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.265 1.265 7 C -0.549 4.549 8 H 0.064 0.936 9 C 0.208 3.792 10 O -0.403 6.403 11 C 0.073 3.927 12 C -0.138 4.138 13 S 0.109 5.891 14 C 0.036 3.964 15 N -0.521 5.521 16 C 0.259 3.741 17 N -0.505 5.505 18 S 0.250 5.750 19 H 0.271 0.729 20 H -0.006 1.006 21 H -0.006 1.006 22 H 0.061 0.939 23 H 0.061 0.939 24 H 0.114 0.886 25 H 0.114 0.886 26 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.950 -17.119 -0.020 18.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.192 4.192 3 Si 0.805 3.195 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.189 1.189 7 C -0.587 4.587 8 H 0.082 0.918 9 C 0.133 3.867 10 O -0.323 6.323 11 C -0.006 4.006 12 C -0.287 4.287 13 S 0.339 5.661 14 C -0.357 4.357 15 N -0.249 5.249 16 C -0.053 4.053 17 N -0.336 5.336 18 S 0.384 5.616 19 H 0.080 0.920 20 H 0.011 0.989 21 H 0.011 0.989 22 H 0.079 0.921 23 H 0.079 0.921 24 H 0.132 0.868 25 H 0.132 0.868 26 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges 6.034 -16.949 -0.013 17.991 hybrid contribution 0.430 0.323 -0.007 0.538 sum 6.464 -16.626 -0.020 17.839 Atomic orbital electron populations 1.70058 1.07650 1.28671 1.50372 1.25925 0.95960 1.03297 0.94001 0.85203 0.78393 0.77186 0.78768 1.19404 1.20112 1.18876 1.21386 0.94253 0.90730 1.52321 0.91782 1.19912 0.88547 0.84007 0.94232 1.87800 1.35479 1.13637 1.95389 1.21947 0.93722 0.83085 1.01832 1.23888 1.02562 0.93307 1.08974 1.85735 0.98882 0.94279 1.87219 1.30803 1.05546 0.98362 1.01034 1.67781 1.27075 1.06990 1.23017 1.25951 0.80772 1.04658 0.93880 1.77459 1.28618 0.98627 1.28926 1.85221 0.96238 1.14672 1.65445 0.92037 0.98869 0.98851 0.92082 0.92072 0.86800 0.86802 0.72632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.98 13.29 21.45 0.28 -53.69 15 2 C 0.01 0.39 5.46 84.65 0.46 0.85 15 3 Si 0.98 42.96 29.54 68.60 2.03 44.98 15 4 H -0.27 -11.32 7.11 99.48 0.71 -10.61 15 5 H -0.28 -11.62 7.11 99.48 0.71 -10.92 15 6 H -0.26 -11.20 7.11 99.48 0.71 -10.50 15 7 C -0.55 -31.30 9.43 25.60 0.24 -31.06 15 8 H 0.06 3.60 7.81 -2.91 -0.02 3.58 15 9 C 0.21 10.98 5.69 71.23 0.41 11.38 15 10 O -0.40 -17.86 10.33 -148.98 -1.54 -19.40 15 11 C 0.07 2.31 5.94 71.98 0.43 2.74 15 12 C -0.14 -3.33 5.15 71.98 0.37 -2.96 15 13 S 0.11 2.36 22.31 -56.49 -1.26 1.10 15 14 C 0.04 0.83 7.93 130.26 1.03 1.86 15 15 N -0.52 -11.97 10.66 -211.23 -2.25 -14.23 15 16 C 0.26 4.98 12.33 181.53 2.24 7.22 15 17 N -0.51 -11.51 12.20 -70.95 -0.87 -12.38 15 18 S 0.25 5.57 22.62 -56.49 -1.28 4.29 15 19 H 0.27 14.63 8.31 -92.71 -0.77 13.86 15 20 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 15 21 H -0.01 -0.34 8.14 -2.38 -0.02 -0.36 15 22 H 0.06 1.85 8.14 -2.39 -0.02 1.83 15 23 H 0.06 1.85 8.14 -2.39 -0.02 1.83 15 24 H 0.11 2.61 8.10 -2.39 -0.02 2.59 15 25 H 0.11 2.61 8.10 -2.40 -0.02 2.59 15 26 H 0.26 2.60 8.06 -2.91 -0.02 2.58 15 Total: -1.00 -64.66 267.13 1.48 -63.18 By element: Atomic # 1 Polarization: -5.09 SS G_CDS: 1.19 Total: -3.90 kcal Atomic # 6 Polarization: -15.14 SS G_CDS: 5.18 Total: -9.96 kcal Atomic # 7 Polarization: -77.46 SS G_CDS: -2.83 Total: -80.29 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: -1.54 Total: -19.40 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.98 kcal Atomic # 16 Polarization: 7.93 SS G_CDS: -2.54 Total: 5.39 kcal Total: -64.66 1.48 -63.18 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385253075.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.476 kcal (2) G-P(sol) polarization free energy of solvation -64.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds