Wall clock time and date at job start Mon Mar 30 2020 03:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.40448 * 126.82050 * 2 1 4 4 C 1.30715 * 106.79261 * 179.97438 * 3 2 1 5 5 N 1.33244 * 108.94545 * 0.02562 * 4 3 2 6 6 C 1.30832 * 109.83031 * 359.97438 * 5 4 3 7 7 C 1.50699 * 125.96108 * 179.97438 * 6 5 4 8 8 N 1.46494 * 109.47232 * 90.02226 * 7 6 5 9 9 S 1.65602 * 120.00137 * 164.99956 * 8 7 6 10 10 O 1.42099 * 106.40251 * 178.54195 * 9 8 7 11 11 O 1.42109 * 106.39827 * 311.46206 * 9 8 7 12 12 C 1.76200 * 107.21734 * 64.99988 * 9 8 7 13 13 H 1.08000 * 119.99609 * 0.02562 * 12 9 8 14 14 C 1.37870 * 119.99822 * 180.02562 * 12 9 8 15 15 N 1.31515 * 120.00367 * 359.97438 * 14 12 9 16 16 Si 1.86799 * 119.99904 * 180.02562 * 14 12 9 17 17 H 1.48503 * 109.47612 * 89.99916 * 16 14 12 18 18 H 1.48504 * 109.47320 * 209.99935 * 16 14 12 19 19 H 1.48505 * 109.47121 * 329.99715 * 16 14 12 20 20 H 1.09002 * 109.46976 * 269.99565 * 1 2 3 21 21 H 1.08997 * 109.47563 * 30.00045 * 1 2 3 22 22 H 1.09004 * 109.46586 * 149.99797 * 1 2 3 23 23 H 1.08005 * 125.52506 * 180.26044 * 4 3 2 24 24 H 1.09000 * 109.46726 * 210.02437 * 7 6 5 25 25 H 1.09002 * 109.46654 * 330.02426 * 7 6 5 26 26 H 0.97002 * 119.99857 * 345.00506 * 8 7 6 27 27 H 0.96995 * 120.00260 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3067 1.1243 0.0000 4 6 3.5348 0.6766 0.0006 5 7 3.5096 -0.6556 0.0003 6 6 2.2707 -1.0761 0.0002 7 6 1.8248 -2.5156 -0.0006 8 7 1.6798 -2.9827 1.3803 9 16 0.8570 -4.3842 1.6983 10 8 0.9224 -4.5776 3.1045 11 8 -0.3671 -4.3023 0.9810 12 6 1.7723 -5.7027 0.9715 13 1 2.6901 -5.4950 0.4415 14 6 1.3168 -6.9995 1.0794 15 7 0.1994 -7.2525 1.7252 16 14 2.2875 -8.3975 0.3095 17 1 3.2662 -8.9225 1.2953 18 1 1.3578 -9.4838 -0.0915 19 1 3.0104 -7.8978 -0.8876 20 1 -0.3633 -0.0001 1.0277 21 1 -0.3634 0.8899 -0.5138 22 1 -0.3632 -0.8900 -0.5139 23 1 4.4255 1.2876 0.0047 24 1 0.8673 -2.5989 -0.5148 25 1 2.5676 -3.1257 -0.5145 26 1 2.0658 -2.4710 2.1084 27 1 -0.1212 -8.1648 1.8007 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389347026.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:46 Heat of formation + Delta-G solvation = -0.656022 kcal Electronic energy + Delta-G solvation = -15866.952910 eV Core-core repulsion = 12981.482014 eV Total energy + Delta-G solvation = -2885.470897 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 246.057 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.06816 -35.48245 -35.00328 -34.07259 -33.87812 -33.12865 -30.98557 -27.48655 -26.19558 -25.79690 -21.97686 -20.54090 -19.12265 -17.68877 -17.06113 -16.27711 -15.99539 -15.38322 -14.79931 -14.67337 -14.28835 -13.80629 -13.41563 -13.15623 -13.07960 -12.67187 -12.04249 -11.72357 -11.31495 -11.23453 -10.69512 -10.61838 -10.41000 -10.32299 -9.99365 -9.71651 -9.56622 -9.28713 -9.21218 -8.66513 -6.75298 -5.38006 1.50515 2.19709 2.35091 2.97932 3.05932 3.13327 3.19698 4.03087 4.11116 4.50900 4.59696 4.64157 4.84687 5.09984 5.16990 5.39356 5.63338 5.72909 5.79899 6.24731 6.28980 6.44032 6.60417 6.78028 7.27653 7.67169 7.92444 8.11765 8.84521 10.19033 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.037935 B = 0.006735 C = 0.006206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.926002 B = 4156.305821 C = 4510.498183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.371 5.371 3 N -0.326 5.326 4 C 0.195 3.805 5 N -0.533 5.533 6 C 0.278 3.722 7 C 0.207 3.793 8 N -1.132 6.132 9 S 2.714 3.286 10 O -1.000 7.000 11 O -1.004 7.004 12 C -1.020 5.020 13 H 0.106 0.894 14 C 0.133 3.867 15 N -0.845 5.845 16 Si 0.922 3.078 17 H -0.267 1.267 18 H -0.275 1.275 19 H -0.261 1.261 20 H 0.084 0.916 21 H 0.092 0.908 22 H 0.101 0.899 23 H 0.217 0.783 24 H 0.098 0.902 25 H 0.101 0.899 26 H 0.407 0.593 27 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.415 10.196 -4.917 11.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.162 5.162 3 N -0.154 5.154 4 C -0.108 4.108 5 N -0.261 5.261 6 C 0.000 4.000 7 C 0.077 3.923 8 N -0.887 5.887 9 S 2.814 3.186 10 O -0.990 6.990 11 O -0.994 6.994 12 C -1.154 5.154 13 H 0.124 0.876 14 C -0.085 4.085 15 N -0.475 5.475 16 Si 0.746 3.254 17 H -0.192 1.192 18 H -0.200 1.200 19 H -0.185 1.185 20 H 0.102 0.898 21 H 0.111 0.889 22 H 0.119 0.881 23 H 0.233 0.767 24 H 0.116 0.884 25 H 0.119 0.881 26 H 0.238 0.762 27 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.347 10.503 -4.526 11.516 hybrid contribution 1.043 -0.758 -0.346 1.335 sum 2.390 9.745 -4.872 11.154 Atomic orbital electron populations 1.22093 0.73364 1.05217 1.04550 1.50314 1.08232 1.03908 1.53738 1.78003 1.02195 1.08425 1.26823 1.25967 0.95738 0.90550 0.98560 1.70530 1.19575 1.11336 1.24668 1.24525 0.86214 0.92771 0.96509 1.19523 1.02676 0.84227 0.85873 1.56120 1.76482 1.44920 1.11152 1.00526 0.73151 0.71566 0.73373 1.93393 1.87428 1.84946 1.33259 1.93358 1.44668 1.86557 1.74849 1.30504 1.24003 1.08744 1.52124 0.87618 1.24747 0.93457 0.99396 0.90907 1.69886 1.18898 1.24055 1.34647 0.86135 0.79831 0.79414 0.80037 1.19175 1.20015 1.18524 0.89778 0.88939 0.88096 0.76656 0.88438 0.88075 0.76244 0.89807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.96 11.33 59.85 0.68 1.64 15 2 N -0.37 -5.27 4.04 -65.10 -0.26 -5.53 15 3 N -0.33 -4.73 12.70 29.29 0.37 -4.36 15 4 C 0.19 2.64 13.03 -91.81 -1.20 1.44 15 5 N -0.53 -8.44 11.19 -11.97 -0.13 -8.57 15 6 C 0.28 4.31 7.38 -155.69 -1.15 3.16 15 7 C 0.21 3.33 6.54 -5.20 -0.03 3.30 15 8 N -1.13 -21.25 5.99 -11.66 -0.07 -21.32 15 9 S 2.71 67.64 5.02 -107.50 -0.54 67.10 15 10 O -1.00 -28.25 18.02 -57.17 -1.03 -29.28 15 11 O -1.00 -26.90 17.49 -57.17 -1.00 -27.90 15 12 C -1.02 -26.77 9.72 30.60 0.30 -26.47 15 13 H 0.11 2.52 7.81 -52.49 -0.41 2.11 15 14 C 0.13 3.59 5.46 -17.82 -0.10 3.49 15 15 N -0.85 -24.04 13.19 55.43 0.73 -23.31 15 16 Si 0.92 19.97 29.54 -169.99 -5.02 14.94 15 17 H -0.27 -5.64 7.11 56.52 0.40 -5.24 15 18 H -0.28 -5.72 7.11 56.52 0.40 -5.32 15 19 H -0.26 -5.43 7.11 56.52 0.40 -5.03 15 20 H 0.08 0.85 8.14 -51.93 -0.42 0.43 15 21 H 0.09 0.79 8.14 -51.93 -0.42 0.37 15 22 H 0.10 0.99 7.11 -51.93 -0.37 0.62 15 23 H 0.22 1.98 8.06 -52.48 -0.42 1.56 15 24 H 0.10 1.45 6.73 -51.93 -0.35 1.10 15 25 H 0.10 1.55 8.14 -51.93 -0.42 1.13 15 26 H 0.41 7.07 8.64 -34.47 -0.30 6.77 15 27 H 0.29 7.45 8.31 -40.82 -0.34 7.12 15 LS Contribution 263.04 15.07 3.96 3.96 Total: -1.00 -35.37 263.04 -6.74 -42.11 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -2.25 Total: 5.60 kcal Atomic # 6 Polarization: -11.95 SS G_CDS: -1.50 Total: -13.45 kcal Atomic # 7 Polarization: -63.73 SS G_CDS: 0.64 Total: -63.09 kcal Atomic # 8 Polarization: -55.15 SS G_CDS: -2.03 Total: -57.18 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.94 kcal Atomic # 16 Polarization: 67.64 SS G_CDS: -0.54 Total: 67.10 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -35.37 -6.74 -42.11 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389347026.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.459 kcal (2) G-P(sol) polarization free energy of solvation -35.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds