Wall clock time and date at job start Mon Mar 30 2020 03:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.40448 * 126.82050 * 2 1 4 4 C 1.30715 * 106.79261 * 179.97438 * 3 2 1 5 5 N 1.33244 * 108.94545 * 0.02562 * 4 3 2 6 6 C 1.30832 * 109.83031 * 359.97438 * 5 4 3 7 7 C 1.50699 * 125.96108 * 179.97438 * 6 5 4 8 8 N 1.46494 * 109.47232 * 90.02226 * 7 6 5 9 9 S 1.65602 * 120.00137 * 164.99956 * 8 7 6 10 10 O 1.42099 * 106.40251 * 178.54195 * 9 8 7 11 11 O 1.42109 * 106.39827 * 311.46206 * 9 8 7 12 12 C 1.76200 * 107.21734 * 64.99988 * 9 8 7 13 13 H 1.08000 * 119.99609 * 0.02562 * 12 9 8 14 14 C 1.37870 * 119.99822 * 180.02562 * 12 9 8 15 15 N 1.31515 * 120.00367 * 359.97438 * 14 12 9 16 16 Si 1.86799 * 119.99904 * 180.02562 * 14 12 9 17 17 H 1.48503 * 109.47612 * 89.99916 * 16 14 12 18 18 H 1.48504 * 109.47320 * 209.99935 * 16 14 12 19 19 H 1.48505 * 109.47121 * 329.99715 * 16 14 12 20 20 H 1.09002 * 109.46976 * 269.99565 * 1 2 3 21 21 H 1.08997 * 109.47563 * 30.00045 * 1 2 3 22 22 H 1.09004 * 109.46586 * 149.99797 * 1 2 3 23 23 H 1.08005 * 125.52506 * 180.26044 * 4 3 2 24 24 H 1.09000 * 109.46726 * 210.02437 * 7 6 5 25 25 H 1.09002 * 109.46654 * 330.02426 * 7 6 5 26 26 H 0.97002 * 119.99857 * 345.00506 * 8 7 6 27 27 H 0.96995 * 120.00260 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3067 1.1243 0.0000 4 6 3.5348 0.6766 0.0006 5 7 3.5096 -0.6556 0.0003 6 6 2.2707 -1.0761 0.0002 7 6 1.8248 -2.5156 -0.0006 8 7 1.6798 -2.9827 1.3803 9 16 0.8570 -4.3842 1.6983 10 8 0.9224 -4.5776 3.1045 11 8 -0.3671 -4.3023 0.9810 12 6 1.7723 -5.7027 0.9715 13 1 2.6901 -5.4950 0.4415 14 6 1.3168 -6.9995 1.0794 15 7 0.1994 -7.2525 1.7252 16 14 2.2875 -8.3975 0.3095 17 1 3.2662 -8.9225 1.2953 18 1 1.3578 -9.4838 -0.0915 19 1 3.0104 -7.8978 -0.8876 20 1 -0.3633 -0.0001 1.0277 21 1 -0.3634 0.8899 -0.5138 22 1 -0.3632 -0.8900 -0.5139 23 1 4.4255 1.2876 0.0047 24 1 0.8673 -2.5989 -0.5148 25 1 2.5676 -3.1257 -0.5145 26 1 2.0658 -2.4710 2.1084 27 1 -0.1212 -8.1648 1.8007 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389347026.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:45 Heat of formation + Delta-G solvation = -29.136995 kcal Electronic energy + Delta-G solvation = -15868.187938 eV Core-core repulsion = 12981.482014 eV Total energy + Delta-G solvation = -2886.705925 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 246.057 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.17022 -37.46527 -36.51577 -36.15242 -35.14503 -34.93306 -32.20488 -28.52161 -28.22552 -27.06399 -23.02931 -21.73915 -21.01748 -19.46458 -18.49893 -17.97588 -17.23139 -17.02741 -16.44666 -16.00330 -15.65893 -15.44733 -15.07494 -14.19289 -14.10262 -13.97534 -13.81209 -13.25303 -12.98262 -12.86797 -12.53411 -12.47771 -12.44105 -12.26013 -11.21665 -11.12956 -11.04786 -10.82873 -10.66550 -10.37469 -8.73116 -7.45507 0.11400 0.60662 1.30337 1.38951 1.40230 1.55631 1.86313 2.24979 2.61452 2.95079 2.98500 3.53955 3.66950 3.79564 4.15207 4.29998 4.44177 4.45217 4.61939 4.67087 4.88735 5.22316 5.32238 5.43100 5.68174 5.93667 6.14223 6.82499 7.01690 8.23327 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.037935 B = 0.006735 C = 0.006206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.926002 B = 4156.305821 C = 4510.498183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.370 5.370 3 N -0.338 5.338 4 C 0.195 3.805 5 N -0.553 5.553 6 C 0.267 3.733 7 C 0.202 3.798 8 N -1.117 6.117 9 S 2.727 3.273 10 O -1.041 7.041 11 O -1.030 7.030 12 C -1.040 5.040 13 H 0.124 0.876 14 C 0.073 3.927 15 N -0.892 5.892 16 Si 0.988 3.012 17 H -0.259 1.259 18 H -0.264 1.264 19 H -0.245 1.245 20 H 0.088 0.912 21 H 0.114 0.886 22 H 0.108 0.892 23 H 0.254 0.746 24 H 0.109 0.891 25 H 0.110 0.890 26 H 0.414 0.586 27 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.545 10.505 -6.089 12.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.161 5.161 3 N -0.167 5.167 4 C -0.107 4.107 5 N -0.282 5.282 6 C -0.011 4.011 7 C 0.074 3.926 8 N -0.876 5.876 9 S 2.828 3.172 10 O -1.031 7.031 11 O -1.019 7.019 12 C -1.174 5.174 13 H 0.142 0.858 14 C -0.140 4.140 15 N -0.524 5.524 16 Si 0.807 3.193 17 H -0.184 1.184 18 H -0.189 1.189 19 H -0.168 1.168 20 H 0.106 0.894 21 H 0.133 0.867 22 H 0.126 0.874 23 H 0.269 0.731 24 H 0.127 0.873 25 H 0.128 0.872 26 H 0.247 0.753 27 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.460 10.839 -5.694 12.488 hybrid contribution 0.691 -0.721 0.012 0.999 sum 3.151 10.118 -5.682 12.024 Atomic orbital electron populations 1.22403 0.71733 1.06769 1.05329 1.50534 1.09256 1.03482 1.52852 1.77986 1.02701 1.08757 1.27270 1.26721 0.96673 0.90073 0.97281 1.70511 1.19909 1.12626 1.25189 1.24249 0.86676 0.92557 0.97656 1.19678 1.03763 0.85122 0.84056 1.55472 1.75879 1.43342 1.12912 0.99808 0.73029 0.72202 0.72197 1.93333 1.88052 1.86101 1.35626 1.93316 1.46347 1.87273 1.74994 1.30900 1.24826 1.09494 1.52139 0.85756 1.25945 0.94363 1.02571 0.91145 1.69972 1.20821 1.25240 1.36344 0.85151 0.78538 0.76008 0.79653 1.18394 1.18851 1.16810 0.89357 0.86713 0.87357 0.73070 0.87332 0.87185 0.75276 0.89094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.55 11.33 127.77 1.45 3.00 15 2 N -0.37 -9.91 4.04 -359.87 -1.45 -11.36 15 3 N -0.34 -9.17 12.70 -61.24 -0.78 -9.94 15 4 C 0.19 4.85 13.03 180.76 2.36 7.20 15 5 N -0.55 -16.56 11.19 -191.77 -2.15 -18.70 15 6 C 0.27 7.88 7.38 138.23 1.02 8.90 15 7 C 0.20 6.28 6.54 85.63 0.56 6.84 15 8 N -1.12 -41.27 5.99 -190.80 -1.14 -42.41 15 9 S 2.73 136.53 5.02 -56.49 -0.28 136.25 15 10 O -1.04 -59.83 18.02 -128.00 -2.31 -62.14 15 11 O -1.03 -55.58 17.49 -128.00 -2.24 -57.82 15 12 C -1.04 -53.99 9.72 67.73 0.66 -53.33 15 13 H 0.12 5.76 7.81 -2.91 -0.02 5.73 15 14 C 0.07 3.89 5.46 84.65 0.46 4.35 15 15 N -0.89 -51.16 13.19 21.44 0.28 -50.88 15 16 Si 0.99 39.68 29.54 68.60 2.03 41.70 15 17 H -0.26 -10.04 7.11 99.48 0.71 -9.33 15 18 H -0.26 -10.03 7.11 99.48 0.71 -9.32 15 19 H -0.25 -9.11 7.11 99.48 0.71 -8.40 15 20 H 0.09 1.68 8.14 -2.39 -0.02 1.66 15 21 H 0.11 1.73 8.14 -2.39 -0.02 1.71 15 22 H 0.11 1.97 7.11 -2.39 -0.02 1.95 15 23 H 0.25 3.87 8.06 -2.91 -0.02 3.85 15 24 H 0.11 3.11 6.73 -2.39 -0.02 3.09 15 25 H 0.11 3.22 8.14 -2.39 -0.02 3.20 15 26 H 0.41 14.18 8.64 -96.74 -0.84 13.34 15 27 H 0.30 15.42 8.31 -92.71 -0.77 14.65 15 Total: -1.00 -75.07 263.04 -1.16 -76.23 By element: Atomic # 1 Polarization: 21.74 SS G_CDS: 0.38 Total: 22.12 kcal Atomic # 6 Polarization: -29.55 SS G_CDS: 6.50 Total: -23.04 kcal Atomic # 7 Polarization: -128.07 SS G_CDS: -5.24 Total: -133.30 kcal Atomic # 8 Polarization: -115.41 SS G_CDS: -4.54 Total: -119.96 kcal Atomic # 14 Polarization: 39.68 SS G_CDS: 2.03 Total: 41.70 kcal Atomic # 16 Polarization: 136.53 SS G_CDS: -0.28 Total: 136.25 kcal Total: -75.07 -1.16 -76.23 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389347026.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.094 kcal (2) G-P(sol) polarization free energy of solvation -75.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds