Wall clock time and date at job start Mon Mar 30 2020 03:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.28603 * 124.62117 * 2 1 4 4 C 1.31375 * 108.72245 * 179.97438 * 3 2 1 5 5 C 1.39673 * 105.89972 * 359.97438 * 4 3 2 6 6 C 1.50703 * 127.05285 * 179.97438 * 5 4 3 7 7 N 1.46498 * 109.47212 * 94.99534 * 6 5 4 8 8 S 1.65602 * 119.99612 * 164.72359 * 7 6 5 9 9 O 1.42104 * 106.40175 * 178.81816 * 8 7 6 10 10 O 1.42095 * 106.40656 * 311.73868 * 8 7 6 11 11 C 1.76203 * 107.21635 * 65.28001 * 8 7 6 12 12 H 1.07994 * 119.99889 * 0.02562 * 11 8 7 13 13 C 1.37877 * 119.99706 * 179.97438 * 11 8 7 14 14 N 1.31515 * 120.00395 * 0.02562 * 13 11 8 15 15 Si 1.86803 * 119.99840 * 180.02562 * 13 11 8 16 16 H 1.48496 * 109.47304 * 59.99977 * 15 13 11 17 17 H 1.48503 * 109.47087 * 180.02562 * 15 13 11 18 18 H 1.48510 * 109.46874 * 300.00101 * 15 13 11 19 19 N 1.28595 * 124.62148 * 180.23849 * 2 1 3 20 20 H 1.09001 * 109.46704 * 90.02463 * 1 2 3 21 21 H 1.08993 * 109.47056 * 210.02572 * 1 2 3 22 22 H 1.08998 * 109.46919 * 330.03200 * 1 2 3 23 23 H 1.07997 * 127.05298 * 179.97438 * 4 3 2 24 24 H 1.08996 * 109.47013 * 334.99840 * 6 5 4 25 25 H 1.08999 * 109.47128 * 215.00053 * 6 5 4 26 26 H 0.97001 * 120.00384 * 345.00836 * 7 6 5 27 27 H 0.97001 * 120.00277 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1956 1.0583 0.0000 4 6 3.4591 0.6984 0.0006 5 6 3.4591 -0.6983 0.0015 6 6 4.6619 -1.6064 0.0019 7 7 4.9794 -1.9956 1.3780 8 16 5.9972 -3.2703 1.6639 9 8 6.1234 -3.3742 3.0756 10 8 5.5434 -4.3381 0.8436 11 6 7.5867 -2.8155 1.0545 12 1 7.7335 -1.8474 0.5988 13 6 8.6432 -3.6950 1.1603 14 7 8.4645 -4.8737 1.7157 15 14 10.3284 -3.2126 0.5149 16 1 10.8011 -1.9971 1.2249 17 1 11.2844 -4.3251 0.7467 18 1 10.2393 -2.9323 -0.9408 19 7 2.1956 -1.0582 -0.0044 20 1 -0.3633 -0.0004 -1.0277 21 1 -0.3633 -0.8897 0.5142 22 1 -0.3633 0.8903 0.5133 23 1 4.3211 1.3491 0.0003 24 1 5.5129 -1.0823 -0.4330 25 1 4.4445 -2.4975 -0.5869 26 1 4.5903 -1.5094 2.1217 27 1 9.2078 -5.4924 1.7905 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389906734.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:49 Heat of formation + Delta-G solvation = 18.800299 kcal Electronic energy + Delta-G solvation = -15623.730975 eV Core-core repulsion = 12739.103768 eV Total energy + Delta-G solvation = -2884.627208 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 246.057 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.49179 -35.47747 -35.02873 -33.90768 -33.22311 -33.00062 -32.14270 -28.19806 -26.10401 -25.26277 -22.26568 -20.91140 -18.99439 -17.45702 -17.29017 -16.75052 -16.18998 -15.48151 -14.75742 -14.71460 -14.07294 -13.46858 -13.36324 -13.21165 -13.08174 -12.75592 -11.98167 -11.41797 -11.17532 -11.13140 -10.75567 -10.59962 -10.51602 -10.24587 -10.17368 -10.14264 -9.20986 -9.16459 -9.01260 -8.48927 -6.66995 -5.29324 1.80508 2.20599 2.34323 2.64803 3.11180 3.15861 3.21550 4.08056 4.11231 4.67201 4.79524 4.83020 4.88235 5.02813 5.09035 5.30393 5.70067 5.86534 5.96129 6.25499 6.26954 6.50235 6.69391 6.84599 7.34961 7.89879 7.99897 8.36496 8.91711 10.27226 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.043758 B = 0.005937 C = 0.005510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.724774 B = 4715.254589 C = 5080.127554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.164 5.164 3 N -0.297 5.297 4 C -0.013 4.013 5 C 0.002 3.998 6 C 0.216 3.784 7 N -1.132 6.132 8 S 2.716 3.284 9 O -1.005 7.005 10 O -1.005 7.005 11 C -1.021 5.021 12 H 0.103 0.897 13 C 0.133 3.867 14 N -0.845 5.845 15 Si 0.921 3.079 16 H -0.264 1.264 17 H -0.277 1.277 18 H -0.264 1.264 19 N -0.273 5.273 20 H 0.087 0.913 21 H 0.102 0.898 22 H 0.100 0.900 23 H 0.200 0.800 24 H 0.085 0.915 25 H 0.092 0.908 26 H 0.403 0.597 27 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.144 10.453 -4.642 15.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.065 5.065 3 N -0.138 5.138 4 C -0.196 4.196 5 C -0.162 4.162 6 C 0.087 3.913 7 N -0.887 5.887 8 S 2.816 3.184 9 O -0.996 6.996 10 O -0.995 6.995 11 C -1.154 5.154 12 H 0.122 0.878 13 C -0.085 4.085 14 N -0.475 5.475 15 Si 0.745 3.255 16 H -0.189 1.189 17 H -0.202 1.202 18 H -0.188 1.188 19 N -0.116 5.116 20 H 0.106 0.894 21 H 0.120 0.880 22 H 0.119 0.881 23 H 0.217 0.783 24 H 0.103 0.897 25 H 0.110 0.890 26 H 0.233 0.767 27 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -11.707 9.353 -4.342 15.600 hybrid contribution 1.966 0.941 -0.277 2.197 sum -9.740 10.294 -4.618 14.905 Atomic orbital electron populations 1.22072 0.70518 1.05705 1.04731 1.47954 1.08815 0.99528 1.50217 1.74012 1.04012 1.16139 1.19665 1.24729 0.94390 0.94804 1.05710 1.23397 0.92633 0.94254 1.05934 1.19247 0.90284 0.96835 0.84949 1.56034 1.66606 1.55028 1.11021 1.00404 0.74117 0.70813 0.73073 1.93377 1.87716 1.85400 1.33079 1.93361 1.82914 1.52721 1.70461 1.30527 1.16986 1.11859 1.56049 0.87828 1.24747 1.00785 0.92747 0.90261 1.69892 1.35075 1.06592 1.35945 0.86197 0.80255 0.79013 0.80045 1.18889 1.20216 1.18820 1.74114 1.03862 1.15232 1.18418 0.89441 0.87964 0.88135 0.78286 0.89652 0.88991 0.76676 0.89843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.83 11.57 59.85 0.69 1.52 15 2 N -0.16 -2.18 4.35 -16.64 -0.07 -2.26 15 3 N -0.30 -4.10 12.05 30.67 0.37 -3.73 15 4 C -0.01 -0.18 12.16 -17.21 -0.21 -0.39 15 5 C 0.00 0.03 6.75 -82.25 -0.56 -0.52 15 6 C 0.22 3.70 6.81 -5.19 -0.04 3.66 15 7 N -1.13 -22.54 5.99 -11.66 -0.07 -22.61 15 8 S 2.72 71.44 5.02 -107.50 -0.54 70.90 15 9 O -1.01 -29.48 18.02 -57.17 -1.03 -30.51 15 10 O -1.00 -29.25 17.48 -57.17 -1.00 -30.25 15 11 C -1.02 -27.45 9.72 30.60 0.30 -27.15 15 12 H 0.10 2.48 7.81 -52.49 -0.41 2.07 15 13 C 0.13 3.66 5.46 -17.82 -0.10 3.56 15 14 N -0.85 -24.77 13.19 55.43 0.73 -24.04 15 15 Si 0.92 20.28 29.54 -169.99 -5.02 15.26 15 16 H -0.26 -5.63 7.11 56.52 0.40 -5.22 15 17 H -0.28 -5.88 7.11 56.52 0.40 -5.48 15 18 H -0.26 -5.57 7.11 56.52 0.40 -5.17 15 19 N -0.27 -4.36 12.05 33.72 0.41 -3.96 15 20 H 0.09 0.50 8.14 -51.93 -0.42 0.08 15 21 H 0.10 0.66 8.14 -51.93 -0.42 0.23 15 22 H 0.10 0.56 8.14 -51.93 -0.42 0.13 15 23 H 0.20 2.00 8.06 -52.49 -0.42 1.58 15 24 H 0.09 1.25 8.14 -51.93 -0.42 0.83 15 25 H 0.09 1.67 7.74 -51.93 -0.40 1.27 15 26 H 0.40 7.25 8.64 -34.47 -0.30 6.95 15 27 H 0.29 7.68 8.31 -40.82 -0.34 7.35 15 LS Contribution 264.61 15.07 3.99 3.99 Total: -1.00 -37.41 264.61 -4.50 -41.91 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -2.36 Total: 4.62 kcal Atomic # 6 Polarization: -19.41 SS G_CDS: 0.09 Total: -19.31 kcal Atomic # 7 Polarization: -57.96 SS G_CDS: 1.36 Total: -56.60 kcal Atomic # 8 Polarization: -58.73 SS G_CDS: -2.03 Total: -60.76 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Atomic # 16 Polarization: 71.44 SS G_CDS: -0.54 Total: 70.90 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -37.41 -4.50 -41.91 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389906734.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.712 kcal (2) G-P(sol) polarization free energy of solvation -37.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds