Wall clock time and date at job start Mon Mar 30 2020 03:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.28603 * 124.62117 * 2 1 4 4 C 1.31375 * 108.72245 * 179.97438 * 3 2 1 5 5 C 1.39673 * 105.89972 * 359.97438 * 4 3 2 6 6 C 1.50703 * 127.05285 * 179.97438 * 5 4 3 7 7 N 1.46498 * 109.47212 * 94.99534 * 6 5 4 8 8 S 1.65602 * 119.99612 * 164.72359 * 7 6 5 9 9 O 1.42104 * 106.40175 * 178.81816 * 8 7 6 10 10 O 1.42095 * 106.40656 * 311.73868 * 8 7 6 11 11 C 1.76203 * 107.21635 * 65.28001 * 8 7 6 12 12 H 1.07994 * 119.99889 * 0.02562 * 11 8 7 13 13 C 1.37877 * 119.99706 * 179.97438 * 11 8 7 14 14 N 1.31515 * 120.00395 * 0.02562 * 13 11 8 15 15 Si 1.86803 * 119.99840 * 180.02562 * 13 11 8 16 16 H 1.48496 * 109.47304 * 59.99977 * 15 13 11 17 17 H 1.48503 * 109.47087 * 180.02562 * 15 13 11 18 18 H 1.48510 * 109.46874 * 300.00101 * 15 13 11 19 19 N 1.28595 * 124.62148 * 180.23849 * 2 1 3 20 20 H 1.09001 * 109.46704 * 90.02463 * 1 2 3 21 21 H 1.08993 * 109.47056 * 210.02572 * 1 2 3 22 22 H 1.08998 * 109.46919 * 330.03200 * 1 2 3 23 23 H 1.07997 * 127.05298 * 179.97438 * 4 3 2 24 24 H 1.08996 * 109.47013 * 334.99840 * 6 5 4 25 25 H 1.08999 * 109.47128 * 215.00053 * 6 5 4 26 26 H 0.97001 * 120.00384 * 345.00836 * 7 6 5 27 27 H 0.97001 * 120.00277 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1956 1.0583 0.0000 4 6 3.4591 0.6984 0.0006 5 6 3.4591 -0.6983 0.0015 6 6 4.6619 -1.6064 0.0019 7 7 4.9794 -1.9956 1.3780 8 16 5.9972 -3.2703 1.6639 9 8 6.1234 -3.3742 3.0756 10 8 5.5434 -4.3381 0.8436 11 6 7.5867 -2.8155 1.0545 12 1 7.7335 -1.8474 0.5988 13 6 8.6432 -3.6950 1.1603 14 7 8.4645 -4.8737 1.7157 15 14 10.3284 -3.2126 0.5149 16 1 10.8011 -1.9971 1.2249 17 1 11.2844 -4.3251 0.7467 18 1 10.2393 -2.9323 -0.9408 19 7 2.1956 -1.0582 -0.0044 20 1 -0.3633 -0.0004 -1.0277 21 1 -0.3633 -0.8897 0.5142 22 1 -0.3633 0.8903 0.5133 23 1 4.3211 1.3491 0.0003 24 1 5.5129 -1.0823 -0.4330 25 1 4.4445 -2.4975 -0.5869 26 1 4.5903 -1.5094 2.1217 27 1 9.2078 -5.4924 1.7905 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389906734.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:49 Heat of formation + Delta-G solvation = -14.071861 kcal Electronic energy + Delta-G solvation = -15625.156419 eV Core-core repulsion = 12739.103768 eV Total energy + Delta-G solvation = -2886.052651 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 246.057 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -44.54904 -37.41705 -36.66156 -36.10298 -35.12417 -34.20253 -33.31392 -29.23736 -28.20267 -26.45066 -23.30163 -22.06704 -21.00106 -19.34319 -18.42789 -18.08904 -17.77227 -17.19123 -16.63363 -15.92672 -15.65452 -15.34115 -14.68457 -14.50728 -13.92274 -13.84965 -13.54361 -13.28373 -12.93189 -12.72210 -12.47055 -12.39561 -12.27352 -12.21485 -11.83025 -11.32507 -11.17112 -10.97752 -10.26162 -10.16944 -8.69764 -7.42790 0.29391 0.80580 1.36526 1.43132 1.43967 1.51032 1.56058 2.27224 2.64472 3.07228 3.11279 3.74928 3.77467 4.16336 4.31282 4.33138 4.51779 4.55710 4.63382 4.66211 5.05593 5.10778 5.21297 5.35581 5.75367 5.96980 6.32890 6.84130 7.29866 8.26653 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.043758 B = 0.005937 C = 0.005510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.724774 B = 4715.254589 C = 5080.127554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.158 5.158 3 N -0.304 5.304 4 C -0.008 4.008 5 C -0.018 4.018 6 C 0.211 3.789 7 N -1.117 6.117 8 S 2.721 3.279 9 O -1.045 7.045 10 O -1.043 7.043 11 C -1.035 5.035 12 H 0.131 0.869 13 C 0.068 3.932 14 N -0.897 5.897 15 Si 0.993 3.007 16 H -0.250 1.250 17 H -0.270 1.270 18 H -0.246 1.246 19 N -0.300 5.300 20 H 0.108 0.892 21 H 0.111 0.889 22 H 0.123 0.877 23 H 0.231 0.769 24 H 0.115 0.885 25 H 0.075 0.925 26 H 0.413 0.587 27 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.726 12.625 -5.694 16.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.061 5.061 3 N -0.145 5.145 4 C -0.190 4.190 5 C -0.181 4.181 6 C 0.084 3.916 7 N -0.876 5.876 8 S 2.822 3.178 9 O -1.036 7.036 10 O -1.033 7.033 11 C -1.169 5.169 12 H 0.149 0.851 13 C -0.145 4.145 14 N -0.529 5.529 15 Si 0.811 3.189 16 H -0.173 1.173 17 H -0.194 1.194 18 H -0.170 1.170 19 N -0.145 5.145 20 H 0.126 0.874 21 H 0.130 0.870 22 H 0.141 0.859 23 H 0.247 0.753 24 H 0.132 0.868 25 H 0.093 0.907 26 H 0.246 0.754 27 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -11.328 11.534 -5.385 17.040 hybrid contribution 1.652 0.313 0.040 1.682 sum -9.676 11.847 -5.345 16.204 Atomic orbital electron populations 1.22583 0.67799 1.07346 1.06653 1.48503 1.10284 0.98723 1.48560 1.74026 1.04243 1.16294 1.19959 1.25195 0.95267 0.94075 1.04447 1.23158 0.92066 0.94996 1.07886 1.19410 0.92417 0.96976 0.82825 1.55400 1.65633 1.53653 1.12939 0.99873 0.74696 0.71289 0.71901 1.93313 1.88450 1.86505 1.35290 1.93306 1.83647 1.55391 1.70951 1.30864 1.17005 1.13096 1.55956 0.85112 1.26061 1.05862 0.92429 0.90119 1.70004 1.36887 1.08221 1.37742 0.85121 0.74291 0.79275 0.80223 1.17332 1.19399 1.16981 1.74053 1.04531 1.16769 1.19101 0.87372 0.87045 0.85871 0.75250 0.86760 0.90702 0.75431 0.89205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.22 11.57 127.77 1.48 2.69 15 2 N -0.16 -3.91 4.35 -206.56 -0.90 -4.81 15 3 N -0.30 -7.67 12.05 -56.87 -0.69 -8.36 15 4 C -0.01 -0.19 12.16 85.11 1.03 0.84 15 5 C -0.02 -0.54 6.75 42.97 0.29 -0.25 15 6 C 0.21 7.06 6.81 85.63 0.58 7.64 15 7 N -1.12 -44.16 5.99 -190.79 -1.14 -45.30 15 8 S 2.72 145.28 5.02 -56.49 -0.28 144.99 15 9 O -1.05 -62.83 18.02 -128.00 -2.31 -65.14 15 10 O -1.04 -62.48 17.48 -128.00 -2.24 -64.72 15 11 C -1.04 -54.97 9.72 67.73 0.66 -54.32 15 12 H 0.13 5.98 7.81 -2.91 -0.02 5.96 15 13 C 0.07 3.71 5.46 84.65 0.46 4.17 15 14 N -0.90 -53.31 13.19 21.45 0.28 -53.02 15 15 Si 0.99 40.15 29.54 68.60 2.03 42.17 15 16 H -0.25 -9.44 7.11 99.48 0.71 -8.73 15 17 H -0.27 -10.43 7.11 99.48 0.71 -9.72 15 18 H -0.25 -9.20 7.11 99.48 0.71 -8.50 15 19 N -0.30 -9.27 12.05 -47.24 -0.57 -9.84 15 20 H 0.11 0.97 8.14 -2.39 -0.02 0.95 15 21 H 0.11 1.23 8.14 -2.39 -0.02 1.22 15 22 H 0.12 1.03 8.14 -2.39 -0.02 1.01 15 23 H 0.23 3.84 8.06 -2.91 -0.02 3.81 15 24 H 0.11 3.11 8.14 -2.39 -0.02 3.09 15 25 H 0.07 2.74 7.74 -2.39 -0.02 2.73 15 26 H 0.41 14.69 8.64 -96.74 -0.84 13.85 15 27 H 0.30 15.96 8.31 -92.71 -0.77 15.19 15 Total: -1.00 -81.46 264.61 -0.94 -82.39 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: 0.37 Total: 20.85 kcal Atomic # 6 Polarization: -43.73 SS G_CDS: 4.51 Total: -39.22 kcal Atomic # 7 Polarization: -118.32 SS G_CDS: -3.01 Total: -121.33 kcal Atomic # 8 Polarization: -125.31 SS G_CDS: -4.54 Total: -129.86 kcal Atomic # 14 Polarization: 40.15 SS G_CDS: 2.03 Total: 42.17 kcal Atomic # 16 Polarization: 145.28 SS G_CDS: -0.28 Total: 144.99 kcal Total: -81.46 -0.94 -82.39 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389906734.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.323 kcal (2) G-P(sol) polarization free energy of solvation -81.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds