Wall clock time and date at job start Mon Mar 30 2020 03:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.35322 * 125.86299 * 2 1 4 4 C 1.35351 * 106.16806 * 180.26356 * 3 2 1 5 5 C 1.50701 * 126.74701 * 180.02562 * 4 3 2 6 6 N 1.46507 * 109.47124 * 95.00142 * 5 4 3 7 7 S 1.65600 * 120.00089 * 165.00062 * 6 5 4 8 8 O 1.42102 * 106.40072 * 178.53765 * 7 6 5 9 9 O 1.42101 * 106.40099 * 311.46085 * 7 6 5 10 10 C 1.76201 * 107.21839 * 64.99841 * 7 6 5 11 11 H 1.07997 * 120.00010 * 0.02562 * 10 7 6 12 12 C 1.37877 * 119.99993 * 179.97438 * 10 7 6 13 13 N 1.31514 * 119.99783 * 0.02562 * 12 10 7 14 14 Si 1.86796 * 120.00222 * 180.02562 * 12 10 7 15 15 H 1.48502 * 109.47176 * 89.99859 * 14 12 10 16 16 H 1.48499 * 109.47252 * 210.00378 * 14 12 10 17 17 H 1.48508 * 109.46948 * 330.00241 * 14 12 10 18 18 N 1.33769 * 106.50107 * 0.02562 * 4 3 2 19 19 N 1.28629 * 108.88659 * 359.97438 * 18 4 3 20 20 H 1.08997 * 109.47250 * 269.71379 * 1 2 3 21 21 H 1.09003 * 109.47080 * 29.71873 * 1 2 3 22 22 H 1.09006 * 109.46804 * 149.71734 * 1 2 3 23 23 H 1.07991 * 126.91601 * 0.22443 * 3 2 1 24 24 H 1.08998 * 109.47347 * 215.00053 * 5 4 3 25 25 H 1.08998 * 109.47646 * 335.00195 * 5 4 3 26 26 H 0.97001 * 119.99254 * 345.00059 * 6 5 4 27 27 H 0.97006 * 119.99890 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2578 1.0967 0.0000 4 6 3.5321 0.6405 -0.0060 5 6 4.7880 1.4736 -0.0079 6 7 5.2664 1.6389 1.3670 7 16 6.8055 2.1812 1.6485 8 8 6.9495 2.2653 3.0597 9 8 7.6624 1.4023 0.8248 10 6 6.8963 3.8323 1.0399 11 1 6.0288 4.2893 0.5871 12 6 8.0744 4.5411 1.1425 13 7 9.1306 3.9847 1.6943 14 14 8.1704 6.2917 0.4980 15 1 7.7962 7.2385 1.5791 16 1 9.5561 6.5779 0.0470 17 1 7.2352 6.4505 -0.6447 18 7 3.4576 -0.6951 -0.0099 19 7 2.2193 -1.0430 -0.0060 20 1 -0.3633 -0.0051 1.0276 21 1 -0.3633 0.8925 -0.5095 22 1 -0.3633 -0.8875 -0.5183 23 1 1.9381 2.1282 0.0034 24 1 5.5540 0.9748 -0.6016 25 1 4.5744 2.4519 -0.4383 26 1 4.6815 1.4306 2.1123 27 1 9.9596 4.4833 1.7662 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389986200.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:19 Heat of formation + Delta-G solvation = 8.945367 kcal Electronic energy + Delta-G solvation = -15603.204854 eV Core-core repulsion = 12718.150304 eV Total energy + Delta-G solvation = -2885.054549 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 246.057 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.22597 -35.55608 -35.06459 -34.05642 -33.87671 -33.04022 -30.78711 -28.13623 -26.10891 -25.62348 -22.04944 -21.23398 -18.99467 -17.54198 -17.26017 -16.60308 -16.11174 -15.41272 -14.82542 -14.70228 -14.11880 -13.78614 -13.52428 -13.22672 -13.05430 -12.46823 -11.96145 -11.66661 -11.24872 -11.19602 -10.78714 -10.58572 -10.48281 -10.21884 -10.12207 -10.06585 -9.22302 -9.20929 -8.98600 -8.46409 -6.66928 -5.29167 1.54490 2.22664 2.31580 2.71683 3.08334 3.15628 3.21206 4.09093 4.21978 4.48941 4.67388 4.68431 4.85685 4.94075 4.96478 5.14391 5.50562 5.83884 5.88674 6.16760 6.25512 6.50077 6.52639 6.86345 7.34759 7.91909 8.00123 8.53635 8.91615 10.27306 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.039504 B = 0.005993 C = 0.005521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.619094 B = 4670.923984 C = 5070.626894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.300 5.300 3 C -0.039 4.039 4 C -0.019 4.019 5 C 0.212 3.788 6 N -1.132 6.132 7 S 2.716 3.284 8 O -1.006 7.006 9 O -1.003 7.003 10 C -1.021 5.021 11 H 0.103 0.897 12 C 0.132 3.868 13 N -0.844 5.844 14 Si 0.921 3.079 15 H -0.268 1.268 16 H -0.275 1.275 17 H -0.263 1.263 18 N -0.252 5.252 19 N -0.092 5.092 20 H 0.090 0.910 21 H 0.098 0.902 22 H 0.099 0.901 23 H 0.194 0.806 24 H 0.094 0.906 25 H 0.080 0.920 26 H 0.402 0.598 27 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.128 -1.085 -4.704 17.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.094 5.094 3 C -0.191 4.191 4 C -0.158 4.158 5 C 0.084 3.916 6 N -0.886 5.886 7 S 2.816 3.184 8 O -0.996 6.996 9 O -0.993 6.993 10 C -1.154 5.154 11 H 0.121 0.879 12 C -0.086 4.086 13 N -0.474 5.474 14 Si 0.745 3.255 15 H -0.193 1.193 16 H -0.200 1.200 17 H -0.187 1.187 18 N -0.119 5.119 19 N -0.072 5.072 20 H 0.108 0.892 21 H 0.116 0.884 22 H 0.118 0.882 23 H 0.211 0.789 24 H 0.112 0.888 25 H 0.098 0.902 26 H 0.232 0.768 27 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -16.125 -3.130 -4.407 17.007 hybrid contribution -0.781 2.563 -0.234 2.689 sum -16.905 -0.567 -4.641 17.540 Atomic orbital electron populations 1.22227 0.72979 1.05723 1.04900 1.47256 1.09279 1.05082 1.47774 1.23493 0.90878 0.94767 1.09949 1.22217 0.95474 0.91423 1.06706 1.19246 0.90680 0.96748 0.84971 1.56029 1.36134 1.85470 1.11016 1.00413 0.69255 0.75682 0.73073 1.93374 1.84027 1.89079 1.33143 1.93366 1.63120 1.72557 1.70270 1.30561 1.05049 1.23703 1.56119 0.87913 1.24750 0.93330 1.00209 0.90291 1.69905 1.02570 1.38855 1.36065 0.86162 0.78304 0.81340 0.79697 1.19304 1.20025 1.18671 1.75129 1.08974 1.12333 1.15463 1.78319 0.96595 1.12169 1.20117 0.89186 0.88363 0.88201 0.78884 0.88802 0.90213 0.76756 0.89892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.42 11.39 59.85 0.68 1.10 15 2 N -0.30 -3.34 3.74 -68.05 -0.25 -3.59 15 3 C -0.04 -0.45 11.55 -17.04 -0.20 -0.65 15 4 C -0.02 -0.30 6.64 -82.78 -0.55 -0.85 15 5 C 0.21 3.69 6.78 -5.19 -0.04 3.65 15 6 N -1.13 -22.84 5.99 -11.65 -0.07 -22.91 15 7 S 2.72 72.18 5.02 -107.50 -0.54 71.64 15 8 O -1.01 -29.72 18.02 -57.17 -1.03 -30.75 15 9 O -1.00 -29.66 17.49 -57.17 -1.00 -30.66 15 10 C -1.02 -27.51 9.72 30.60 0.30 -27.21 15 11 H 0.10 2.46 7.81 -52.49 -0.41 2.05 15 12 C 0.13 3.65 5.46 -17.82 -0.10 3.56 15 13 N -0.84 -24.84 13.19 55.43 0.73 -24.10 15 14 Si 0.92 20.24 29.54 -169.99 -5.02 15.22 15 15 H -0.27 -5.70 7.11 56.52 0.40 -5.30 15 16 H -0.28 -5.84 7.11 56.52 0.40 -5.44 15 17 H -0.26 -5.49 7.11 56.52 0.40 -5.09 15 18 N -0.25 -4.48 12.41 33.29 0.41 -4.07 15 19 N -0.09 -1.41 13.16 60.35 0.79 -0.62 15 20 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 15 21 H 0.10 0.23 8.14 -51.93 -0.42 -0.20 15 22 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 15 23 H 0.19 1.44 8.06 -52.49 -0.42 1.02 15 24 H 0.09 1.76 7.75 -51.93 -0.40 1.36 15 25 H 0.08 1.17 8.14 -51.93 -0.42 0.74 15 26 H 0.40 7.31 8.64 -34.48 -0.30 7.01 15 27 H 0.29 7.67 8.31 -40.82 -0.34 7.34 15 LS Contribution 264.56 15.07 3.99 3.99 Total: -1.00 -38.63 264.56 -4.25 -42.88 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -2.36 Total: 3.38 kcal Atomic # 6 Polarization: -20.50 SS G_CDS: 0.10 Total: -20.40 kcal Atomic # 7 Polarization: -56.91 SS G_CDS: 1.61 Total: -55.29 kcal Atomic # 8 Polarization: -59.38 SS G_CDS: -2.03 Total: -61.41 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Atomic # 16 Polarization: 72.18 SS G_CDS: -0.54 Total: 71.64 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -38.63 -4.25 -42.88 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389986200.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.827 kcal (2) G-P(sol) polarization free energy of solvation -38.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds