Wall clock time and date at job start Mon Mar 30 2020 03:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.35322 * 125.86299 * 2 1 4 4 C 1.35351 * 106.16806 * 180.26356 * 3 2 1 5 5 C 1.50701 * 126.74701 * 180.02562 * 4 3 2 6 6 N 1.46507 * 109.47124 * 95.00142 * 5 4 3 7 7 S 1.65600 * 120.00089 * 165.00062 * 6 5 4 8 8 O 1.42102 * 106.40072 * 178.53765 * 7 6 5 9 9 O 1.42101 * 106.40099 * 311.46085 * 7 6 5 10 10 C 1.76201 * 107.21839 * 64.99841 * 7 6 5 11 11 H 1.07997 * 120.00010 * 0.02562 * 10 7 6 12 12 C 1.37877 * 119.99993 * 179.97438 * 10 7 6 13 13 N 1.31514 * 119.99783 * 0.02562 * 12 10 7 14 14 Si 1.86796 * 120.00222 * 180.02562 * 12 10 7 15 15 H 1.48502 * 109.47176 * 89.99859 * 14 12 10 16 16 H 1.48499 * 109.47252 * 210.00378 * 14 12 10 17 17 H 1.48508 * 109.46948 * 330.00241 * 14 12 10 18 18 N 1.33769 * 106.50107 * 0.02562 * 4 3 2 19 19 N 1.28629 * 108.88659 * 359.97438 * 18 4 3 20 20 H 1.08997 * 109.47250 * 269.71379 * 1 2 3 21 21 H 1.09003 * 109.47080 * 29.71873 * 1 2 3 22 22 H 1.09006 * 109.46804 * 149.71734 * 1 2 3 23 23 H 1.07991 * 126.91601 * 0.22443 * 3 2 1 24 24 H 1.08998 * 109.47347 * 215.00053 * 5 4 3 25 25 H 1.08998 * 109.47646 * 335.00195 * 5 4 3 26 26 H 0.97001 * 119.99254 * 345.00059 * 6 5 4 27 27 H 0.97006 * 119.99890 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2578 1.0967 0.0000 4 6 3.5321 0.6405 -0.0060 5 6 4.7880 1.4736 -0.0079 6 7 5.2664 1.6389 1.3670 7 16 6.8055 2.1812 1.6485 8 8 6.9495 2.2653 3.0597 9 8 7.6624 1.4023 0.8248 10 6 6.8963 3.8323 1.0399 11 1 6.0288 4.2893 0.5871 12 6 8.0744 4.5411 1.1425 13 7 9.1306 3.9847 1.6943 14 14 8.1704 6.2917 0.4980 15 1 7.7962 7.2385 1.5791 16 1 9.5561 6.5779 0.0470 17 1 7.2352 6.4505 -0.6447 18 7 3.4576 -0.6951 -0.0099 19 7 2.2193 -1.0430 -0.0060 20 1 -0.3633 -0.0051 1.0276 21 1 -0.3633 0.8925 -0.5095 22 1 -0.3633 -0.8875 -0.5183 23 1 1.9381 2.1282 0.0034 24 1 5.5540 0.9748 -0.6016 25 1 4.5744 2.4519 -0.4383 26 1 4.6815 1.4306 2.1123 27 1 9.9596 4.4833 1.7662 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389986200.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:19 Heat of formation + Delta-G solvation = -25.591866 kcal Electronic energy + Delta-G solvation = -15604.702501 eV Core-core repulsion = 12718.150304 eV Total energy + Delta-G solvation = -2886.552196 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 246.057 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -44.23434 -37.40942 -36.69042 -36.09540 -35.22200 -35.04560 -31.97416 -28.80925 -28.21150 -26.95904 -22.98895 -22.33936 -21.00974 -19.34251 -18.49135 -17.99315 -17.50637 -17.04900 -16.58165 -15.97110 -15.73830 -15.35090 -14.84865 -14.16796 -13.98355 -13.85662 -13.59295 -13.22155 -12.95410 -12.81116 -12.47962 -12.39542 -12.37192 -12.23506 -11.81162 -11.19351 -11.02371 -10.95900 -10.31435 -10.17660 -8.69808 -7.43137 0.31944 0.65767 1.38060 1.41405 1.47541 1.57708 1.59744 2.27179 2.64431 3.10225 3.29946 3.75190 3.81310 4.02176 4.19988 4.39197 4.50537 4.55508 4.66115 4.68841 4.98123 5.04585 5.15317 5.35617 5.70505 5.96735 6.34870 6.83587 7.48634 8.26957 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.039504 B = 0.005993 C = 0.005521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.619094 B = 4670.923984 C = 5070.626894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.287 5.287 3 C -0.007 4.007 4 C -0.051 4.051 5 C 0.208 3.792 6 N -1.117 6.117 7 S 2.718 3.282 8 O -1.046 7.046 9 O -1.046 7.046 10 C -1.032 5.032 11 H 0.132 0.868 12 C 0.066 3.934 13 N -0.898 5.898 14 Si 0.996 3.004 15 H -0.256 1.256 16 H -0.269 1.269 17 H -0.240 1.240 18 N -0.304 5.304 19 N -0.119 5.119 20 H 0.107 0.893 21 H 0.135 0.865 22 H 0.107 0.893 23 H 0.243 0.757 24 H 0.068 0.932 25 H 0.114 0.886 26 H 0.412 0.588 27 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.986 1.304 -5.787 20.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.081 5.081 3 C -0.160 4.160 4 C -0.192 4.192 5 C 0.081 3.919 6 N -0.876 5.876 7 S 2.820 3.180 8 O -1.037 7.037 9 O -1.035 7.035 10 C -1.167 5.167 11 H 0.150 0.850 12 C -0.147 4.147 13 N -0.530 5.530 14 Si 0.814 3.186 15 H -0.180 1.180 16 H -0.193 1.193 17 H -0.163 1.163 18 N -0.171 5.171 19 N -0.099 5.099 20 H 0.126 0.874 21 H 0.154 0.846 22 H 0.126 0.874 23 H 0.259 0.741 24 H 0.087 0.913 25 H 0.132 0.868 26 H 0.245 0.755 27 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -19.030 -0.800 -5.481 19.820 hybrid contribution -0.060 1.752 0.099 1.756 sum -19.090 0.952 -5.382 19.857 Atomic orbital electron populations 1.22802 0.69324 1.08064 1.06787 1.47747 1.11191 1.04066 1.45072 1.24070 0.89188 0.96551 1.06240 1.22068 0.96374 0.90953 1.09784 1.19399 0.91108 0.98725 0.82689 1.55393 1.34186 1.85023 1.13002 0.99949 0.70195 0.75984 0.71912 1.93308 1.85431 1.89564 1.35365 1.93308 1.65709 1.73691 1.70832 1.30861 1.06305 1.23479 1.56010 0.84964 1.26110 0.92707 1.05723 0.90133 1.70023 1.03708 1.41323 1.37910 0.85053 0.79144 0.74565 0.79888 1.18037 1.19347 1.16254 1.75057 1.10713 1.13978 1.17342 1.78215 0.96290 1.13756 1.21596 0.87419 0.84649 0.87422 0.74096 0.91341 0.86806 0.75500 0.89228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.41 11.39 127.77 1.46 1.86 15 2 N -0.29 -5.53 3.74 -369.22 -1.38 -6.91 15 3 C -0.01 -0.14 11.55 83.49 0.96 0.82 15 4 C -0.05 -1.55 6.64 41.60 0.28 -1.27 15 5 C 0.21 7.09 6.78 85.63 0.58 7.68 15 6 N -1.12 -45.01 5.99 -190.78 -1.14 -46.15 15 7 S 2.72 147.46 5.02 -56.49 -0.28 147.18 15 8 O -1.05 -63.69 18.02 -128.00 -2.31 -65.99 15 9 O -1.05 -64.25 17.49 -128.00 -2.24 -66.49 15 10 C -1.03 -54.84 9.72 67.73 0.66 -54.18 15 11 H 0.13 5.99 7.81 -2.91 -0.02 5.97 15 12 C 0.07 3.59 5.46 84.65 0.46 4.05 15 13 N -0.90 -53.73 13.19 21.45 0.28 -53.45 15 14 Si 1.00 39.93 29.54 68.60 2.03 41.96 15 15 H -0.26 -9.71 7.11 99.48 0.71 -9.00 15 16 H -0.27 -10.38 7.11 99.48 0.71 -9.68 15 17 H -0.24 -8.66 7.11 99.48 0.71 -7.95 15 18 N -0.30 -10.90 12.41 -48.60 -0.60 -11.51 15 19 N -0.12 -3.53 13.16 37.02 0.49 -3.05 15 20 H 0.11 0.35 8.14 -2.39 -0.02 0.33 15 21 H 0.14 -0.14 8.14 -2.39 -0.02 -0.16 15 22 H 0.11 0.53 8.14 -2.38 -0.02 0.51 15 23 H 0.24 2.12 8.06 -2.92 -0.02 2.09 15 24 H 0.07 2.65 7.75 -2.39 -0.02 2.63 15 25 H 0.11 3.04 8.14 -2.39 -0.02 3.02 15 26 H 0.41 14.89 8.64 -96.74 -0.84 14.05 15 27 H 0.30 16.01 8.31 -92.70 -0.77 15.24 15 Total: -1.00 -88.01 264.56 -0.39 -88.40 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: 0.37 Total: 17.06 kcal Atomic # 6 Polarization: -45.44 SS G_CDS: 4.40 Total: -41.05 kcal Atomic # 7 Polarization: -118.71 SS G_CDS: -2.36 Total: -121.06 kcal Atomic # 8 Polarization: -127.94 SS G_CDS: -4.54 Total: -132.49 kcal Atomic # 14 Polarization: 39.93 SS G_CDS: 2.03 Total: 41.96 kcal Atomic # 16 Polarization: 147.46 SS G_CDS: -0.28 Total: 147.18 kcal Total: -88.01 -0.39 -88.40 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389986200.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.804 kcal (2) G-P(sol) polarization free energy of solvation -88.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds