Wall clock time and date at job start Mon Mar 30 2020 03:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00272 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00082 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 N 1.46500 * 109.47299 * 180.02562 * 9 7 2 11 11 N 1.40030 * 125.98625 * 90.02145 * 10 9 7 12 12 C 1.30283 * 109.69523 * 179.97438 * 11 10 9 13 13 C 1.41147 * 108.70982 * 359.97438 * 12 11 10 14 14 C 1.37221 * 125.97998 * 269.71303 * 10 9 7 15 15 C 1.39221 * 133.64297 * 0.69112 * 14 10 9 16 16 C 1.37840 * 120.20706 * 179.66338 * 15 14 10 17 17 C 1.38486 * 120.79799 * 359.71153 * 16 15 14 18 18 C 1.39066 * 120.36112 * 0.02562 * 17 16 15 19 19 C 1.47326 * 120.30145 * 179.97438 * 18 17 16 20 20 O 1.21516 * 119.99949 * 180.02562 * 19 18 17 21 21 O 1.34780 * 119.99692 * 0.02562 * 19 18 17 22 22 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 24 24 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 25 25 H 1.07999 * 125.63695 * 180.02562 * 12 11 10 26 26 H 1.07989 * 119.89371 * 359.42026 * 15 14 10 27 27 H 1.08000 * 119.60351 * 179.73322 * 16 15 14 28 28 H 1.07997 * 119.81707 * 179.97438 * 17 16 15 29 29 H 0.96705 * 116.99764 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 7 2.2030 -3.6127 -0.0119 11 7 2.7416 -4.2409 1.1178 12 6 3.5526 -5.1908 0.7472 13 6 3.5857 -5.2332 -0.6632 14 6 2.7186 -4.2266 -1.1256 15 6 2.5546 -4.0295 -2.4940 16 6 3.2305 -4.8241 -3.3950 17 6 4.0845 -5.8230 -2.9582 18 6 4.2736 -6.0409 -1.5978 19 6 5.1820 -7.1043 -1.1346 20 8 5.3428 -7.2903 0.0554 21 8 5.8347 -7.8708 -2.0308 22 1 -0.4850 -0.8400 0.0004 23 1 0.6281 -2.5591 0.8866 24 1 0.6207 -2.5548 -0.8933 25 1 4.1070 -5.8390 1.4097 26 1 1.8928 -3.2543 -2.8506 27 1 3.0928 -4.6655 -4.4543 28 1 4.6059 -6.4365 -3.6780 29 1 6.4201 -8.5554 -1.6791 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390055628.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:05 Heat of formation + Delta-G solvation = -8.149302 kcal Electronic energy + Delta-G solvation = -16905.255934 eV Core-core repulsion = 13987.556496 eV Total energy + Delta-G solvation = -2917.699438 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.16151 -39.82026 -36.77075 -36.06409 -34.18707 -32.24954 -30.29940 -29.54391 -26.61188 -24.59112 -23.38911 -21.86409 -21.63584 -20.02841 -18.02763 -17.48675 -16.68350 -16.44298 -15.74442 -15.60212 -14.79843 -14.59468 -13.93911 -13.66560 -13.64654 -13.08815 -12.64027 -12.04577 -11.72940 -11.67851 -11.57787 -11.41542 -11.13817 -10.82816 -10.41871 -10.30685 -10.22104 -9.95484 -9.02646 -8.65555 -8.39209 -7.47824 -6.65515 -4.43044 0.57518 1.68468 2.61526 2.98635 3.03778 3.15517 3.32587 3.34630 3.53513 4.01491 4.34282 4.89708 4.96122 5.02254 5.11878 5.24556 5.38767 5.50683 5.88590 5.92230 6.08492 6.33324 6.41431 6.52310 6.53062 6.61321 6.85672 7.01521 7.56440 7.59912 7.90850 8.15790 8.24500 8.49564 9.26072 10.70523 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.034994 B = 0.005836 C = 0.005538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.944896 B = 4796.881537 C = 5055.206773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.027 3.973 3 Si 1.075 2.925 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.620 4.620 8 H 0.059 0.941 9 C 0.254 3.746 10 N -0.351 5.351 11 N -0.236 5.236 12 C 0.042 3.958 13 C -0.134 4.134 14 C 0.116 3.884 15 C -0.077 4.077 16 C -0.109 4.109 17 C -0.092 4.092 18 C -0.071 4.071 19 C 0.529 3.471 20 O -0.513 6.513 21 O -0.515 6.515 22 H 0.268 0.732 23 H 0.045 0.955 24 H 0.042 0.958 25 H 0.193 0.807 26 H 0.134 0.866 27 H 0.135 0.865 28 H 0.136 0.864 29 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.721 -12.051 -7.338 16.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.178 4.178 3 Si 0.902 3.098 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.658 4.658 8 H 0.077 0.923 9 C 0.136 3.864 10 N -0.137 5.137 11 N -0.052 5.052 12 C -0.149 4.149 13 C -0.143 4.143 14 C -0.004 4.004 15 C -0.099 4.099 16 C -0.130 4.130 17 C -0.113 4.113 18 C -0.075 4.075 19 C 0.374 3.626 20 O -0.402 6.402 21 O -0.326 6.326 22 H 0.078 0.922 23 H 0.063 0.937 24 H 0.059 0.941 25 H 0.210 0.790 26 H 0.152 0.848 27 H 0.152 0.848 28 H 0.154 0.846 29 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 6.618 -9.364 -6.095 12.986 hybrid contribution 0.943 -2.477 -0.374 2.677 sum 7.561 -11.841 -6.469 15.467 Atomic orbital electron populations 1.70850 1.06759 1.30557 1.45301 1.25926 0.96280 1.02718 0.92887 0.83442 0.74880 0.74567 0.76940 1.20359 1.21105 1.21091 1.22198 0.95185 0.90751 1.57657 0.92273 1.19721 0.86493 0.81621 0.98585 1.49283 1.36676 1.27813 0.99885 1.76821 1.10279 1.07207 1.10890 1.23923 0.99597 0.98124 0.93282 1.18618 1.02356 0.99688 0.93682 1.18803 0.96723 0.94464 0.90410 1.20491 1.00318 0.99822 0.89264 1.20839 0.97137 0.95545 0.99460 1.21167 0.98291 0.98049 0.93751 1.18287 0.99547 0.96333 0.93353 1.20876 0.77993 0.80173 0.83527 1.90846 1.62673 1.68816 1.17865 1.84588 1.57930 1.47431 1.42685 0.92154 0.93698 0.94069 0.79039 0.84808 0.84753 0.84584 0.73166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.79 13.65 55.43 0.76 -25.04 15 2 C 0.03 0.75 5.46 -17.82 -0.10 0.66 15 3 Si 1.08 24.43 29.90 -169.99 -5.08 19.35 15 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 15 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 15 6 H -0.28 -6.17 7.11 56.52 0.40 -5.77 15 7 C -0.62 -17.12 9.39 -34.44 -0.32 -17.44 15 8 H 0.06 1.70 7.81 -52.49 -0.41 1.29 15 9 C 0.25 6.39 5.48 -5.19 -0.03 6.36 15 10 N -0.35 -8.21 3.66 -59.89 -0.22 -8.43 15 11 N -0.24 -5.38 12.45 30.80 0.38 -5.00 15 12 C 0.04 0.84 11.23 -17.11 -0.19 0.65 15 13 C -0.13 -2.56 6.00 -106.67 -0.64 -3.20 15 14 C 0.12 2.37 6.88 -84.17 -0.58 1.79 15 15 C -0.08 -1.31 10.01 -39.36 -0.39 -1.70 15 16 C -0.11 -1.45 9.99 -39.64 -0.40 -1.85 15 17 C -0.09 -1.22 9.60 -39.18 -0.38 -1.59 15 18 C -0.07 -1.12 5.90 -104.70 -0.62 -1.74 15 19 C 0.53 7.47 8.26 34.43 0.28 7.76 15 20 O -0.51 -8.38 15.73 -19.28 -0.30 -8.69 15 21 O -0.51 -5.10 12.67 -40.71 -0.52 -5.62 15 22 H 0.27 7.54 7.22 -40.82 -0.29 7.25 15 23 H 0.05 1.18 8.01 -51.93 -0.42 0.77 15 24 H 0.04 1.01 8.00 -51.93 -0.42 0.59 15 25 H 0.19 3.36 6.95 -52.49 -0.36 3.00 15 26 H 0.13 2.21 8.06 -52.49 -0.42 1.78 15 27 H 0.13 1.31 8.06 -52.49 -0.42 0.89 15 28 H 0.14 1.39 7.59 -52.49 -0.40 1.00 15 29 H 0.41 2.10 9.11 45.56 0.42 2.51 15 LS Contribution 268.40 15.07 4.04 4.04 Total: -1.00 -32.33 268.40 -5.82 -38.15 By element: Atomic # 1 Polarization: 3.06 SS G_CDS: -1.53 Total: 1.53 kcal Atomic # 6 Polarization: -6.95 SS G_CDS: -3.36 Total: -10.31 kcal Atomic # 7 Polarization: -39.38 SS G_CDS: 0.92 Total: -38.46 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: -0.82 Total: -14.31 kcal Atomic # 14 Polarization: 24.43 SS G_CDS: -5.08 Total: 19.35 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -32.33 -5.82 -38.15 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390055628.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.006 kcal (2) G-P(sol) polarization free energy of solvation -32.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds