Wall clock time and date at job start Mon Mar 30 2020 03:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00272 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00082 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 N 1.46500 * 109.47299 * 180.02562 * 9 7 2 11 11 N 1.40030 * 125.98625 * 90.02145 * 10 9 7 12 12 C 1.30283 * 109.69523 * 179.97438 * 11 10 9 13 13 C 1.41147 * 108.70982 * 359.97438 * 12 11 10 14 14 C 1.37221 * 125.97998 * 269.71303 * 10 9 7 15 15 C 1.39221 * 133.64297 * 0.69112 * 14 10 9 16 16 C 1.37840 * 120.20706 * 179.66338 * 15 14 10 17 17 C 1.38486 * 120.79799 * 359.71153 * 16 15 14 18 18 C 1.39066 * 120.36112 * 0.02562 * 17 16 15 19 19 C 1.47326 * 120.30145 * 179.97438 * 18 17 16 20 20 O 1.21516 * 119.99949 * 180.02562 * 19 18 17 21 21 O 1.34780 * 119.99692 * 0.02562 * 19 18 17 22 22 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 24 24 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 25 25 H 1.07999 * 125.63695 * 180.02562 * 12 11 10 26 26 H 1.07989 * 119.89371 * 359.42026 * 15 14 10 27 27 H 1.08000 * 119.60351 * 179.73322 * 16 15 14 28 28 H 1.07997 * 119.81707 * 179.97438 * 17 16 15 29 29 H 0.96705 * 116.99764 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 7 2.2030 -3.6127 -0.0119 11 7 2.7416 -4.2409 1.1178 12 6 3.5526 -5.1908 0.7472 13 6 3.5857 -5.2332 -0.6632 14 6 2.7186 -4.2266 -1.1256 15 6 2.5546 -4.0295 -2.4940 16 6 3.2305 -4.8241 -3.3950 17 6 4.0845 -5.8230 -2.9582 18 6 4.2736 -6.0409 -1.5978 19 6 5.1820 -7.1043 -1.1346 20 8 5.3428 -7.2903 0.0554 21 8 5.8347 -7.8708 -2.0308 22 1 -0.4850 -0.8400 0.0004 23 1 0.6281 -2.5591 0.8866 24 1 0.6207 -2.5548 -0.8933 25 1 4.1070 -5.8390 1.4097 26 1 1.8928 -3.2543 -2.8506 27 1 3.0928 -4.6655 -4.4543 28 1 4.6059 -6.4365 -3.6780 29 1 6.4201 -8.5554 -1.6791 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390055628.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:05 Heat of formation + Delta-G solvation = -30.442924 kcal Electronic energy + Delta-G solvation = -16906.222658 eV Core-core repulsion = 13987.556496 eV Total energy + Delta-G solvation = -2918.666162 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.57790 -40.92683 -38.07136 -37.04350 -36.14301 -33.91865 -31.75827 -30.92299 -28.46609 -25.79585 -25.35886 -23.17650 -22.99448 -21.43841 -19.42072 -19.02722 -18.17660 -17.80338 -17.03413 -16.71863 -16.25530 -16.04195 -15.75369 -15.27887 -14.83889 -14.49349 -14.27836 -13.86901 -13.40382 -12.92948 -12.85591 -12.68429 -12.60795 -12.51713 -11.97583 -11.89974 -11.62349 -11.54610 -10.84704 -10.74809 -9.76831 -9.09330 -8.75819 -6.64585 -0.67314 0.40684 1.35670 1.46262 1.50364 1.54790 1.65517 1.77125 2.03189 2.44765 2.75626 2.94673 3.58342 3.64343 3.84937 3.98104 4.13840 4.22324 4.47347 4.56313 4.61696 4.79942 4.94358 5.19566 5.32091 5.46660 5.50586 5.60137 5.67407 5.80709 6.12653 6.31256 6.64021 7.01111 7.12684 8.50967 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.034994 B = 0.005836 C = 0.005538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.944896 B = 4796.881537 C = 5055.206773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.014 4.014 3 Si 1.120 2.880 4 H -0.273 1.273 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.631 4.631 8 H 0.041 0.959 9 C 0.268 3.732 10 N -0.382 5.382 11 N -0.286 5.286 12 C 0.054 3.946 13 C -0.154 4.154 14 C 0.092 3.908 15 C -0.106 4.106 16 C -0.077 4.077 17 C -0.071 4.071 18 C -0.081 4.081 19 C 0.538 3.462 20 O -0.542 6.542 21 O -0.495 6.495 22 H 0.260 0.740 23 H 0.020 0.980 24 H 0.042 0.958 25 H 0.209 0.791 26 H 0.130 0.870 27 H 0.183 0.817 28 H 0.181 0.819 29 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.726 -13.235 -10.061 19.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.215 4.215 3 Si 0.939 3.061 4 H -0.198 1.198 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.669 4.669 8 H 0.060 0.940 9 C 0.148 3.852 10 N -0.169 5.169 11 N -0.102 5.102 12 C -0.138 4.138 13 C -0.163 4.163 14 C -0.026 4.026 15 C -0.128 4.128 16 C -0.097 4.097 17 C -0.090 4.090 18 C -0.085 4.085 19 C 0.384 3.616 20 O -0.433 6.433 21 O -0.309 6.309 22 H 0.070 0.930 23 H 0.038 0.962 24 H 0.060 0.940 25 H 0.226 0.774 26 H 0.148 0.852 27 H 0.200 0.800 28 H 0.198 0.802 29 H 0.297 0.703 Dipole moment (debyes) X Y Z Total from point charges 8.646 -10.609 -8.851 16.298 hybrid contribution 0.436 -2.337 0.315 2.398 sum 9.083 -12.945 -8.536 17.971 Atomic orbital electron populations 1.70946 1.07474 1.30156 1.46756 1.27336 0.96384 1.06035 0.91715 0.82898 0.74208 0.70979 0.77965 1.19764 1.20341 1.19017 1.22372 0.94429 0.92314 1.57755 0.94032 1.19258 0.86656 0.82006 0.97236 1.48961 1.38099 1.28619 1.01173 1.76716 1.12487 1.09160 1.11813 1.24263 0.98113 0.96911 0.94513 1.18819 1.03295 1.00581 0.93614 1.19348 0.97279 0.94891 0.91088 1.20755 1.02118 1.01508 0.88429 1.21416 0.94162 0.93097 1.01051 1.21719 0.96799 0.97268 0.93207 1.18563 0.99532 0.96433 0.93969 1.20538 0.77722 0.80024 0.83317 1.90846 1.63639 1.69639 1.19223 1.84504 1.57693 1.47490 1.41220 0.93050 0.96169 0.94039 0.77440 0.85226 0.79966 0.80159 0.70297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.94 13.65 21.45 0.29 -53.65 15 2 C -0.01 -0.81 5.46 84.65 0.46 -0.35 15 3 Si 1.12 49.31 29.90 68.60 2.05 51.36 15 4 H -0.27 -11.70 7.11 99.48 0.71 -11.00 15 5 H -0.28 -11.83 7.11 99.48 0.71 -11.13 15 6 H -0.27 -10.78 7.11 99.48 0.71 -10.07 15 7 C -0.63 -36.24 9.39 25.60 0.24 -36.00 15 8 H 0.04 2.48 7.81 -2.91 -0.02 2.46 15 9 C 0.27 14.33 5.48 85.64 0.47 14.80 15 10 N -0.38 -18.83 3.66 -343.39 -1.26 -20.09 15 11 N -0.29 -13.79 12.45 -56.46 -0.70 -14.49 15 12 C 0.05 2.22 11.23 85.64 0.96 3.18 15 13 C -0.15 -5.85 6.00 -21.19 -0.13 -5.97 15 14 C 0.09 3.82 6.88 39.13 0.27 4.09 15 15 C -0.11 -3.51 10.01 22.41 0.22 -3.28 15 16 C -0.08 -1.71 9.99 22.23 0.22 -1.49 15 17 C -0.07 -1.51 9.60 22.53 0.22 -1.29 15 18 C -0.08 -2.33 5.90 -19.91 -0.12 -2.44 15 19 C 0.54 13.52 8.26 70.21 0.58 14.10 15 20 O -0.54 -16.75 15.73 19.78 0.31 -16.44 15 21 O -0.50 -7.42 12.67 -56.91 -0.72 -8.14 15 22 H 0.26 15.26 7.22 -92.71 -0.67 14.59 15 23 H 0.02 1.15 8.01 -2.39 -0.02 1.14 15 24 H 0.04 2.17 8.00 -2.39 -0.02 2.15 15 25 H 0.21 7.45 6.95 -2.91 -0.02 7.43 15 26 H 0.13 4.29 8.06 -2.92 -0.02 4.27 15 27 H 0.18 2.38 8.06 -2.91 -0.02 2.36 15 28 H 0.18 2.36 7.59 -2.91 -0.02 2.34 15 29 H 0.43 2.39 9.11 -74.05 -0.67 1.71 15 Total: -1.00 -73.87 268.40 4.00 -69.87 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: 0.63 Total: 6.24 kcal Atomic # 6 Polarization: -18.06 SS G_CDS: 3.40 Total: -14.66 kcal Atomic # 7 Polarization: -86.56 SS G_CDS: -1.67 Total: -88.23 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: -0.41 Total: -24.58 kcal Atomic # 14 Polarization: 49.31 SS G_CDS: 2.05 Total: 51.36 kcal Total: -73.87 4.00 -69.87 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390055628.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.428 kcal (2) G-P(sol) polarization free energy of solvation -73.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds