Wall clock time and date at job start Mon Mar 30 2020 03:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30834 * 125.95694 * 2 1 4 4 C 1.33241 * 109.82716 * 180.02562 * 3 2 1 5 5 C 1.50701 * 125.52704 * 179.97438 * 4 3 2 6 6 N 1.46502 * 109.46914 * 90.00376 * 5 4 3 7 7 S 1.65605 * 120.00094 * 165.00247 * 6 5 4 8 8 O 1.42094 * 106.40103 * 178.53549 * 7 6 5 9 9 O 1.42100 * 106.39952 * 311.45620 * 7 6 5 10 10 C 1.76201 * 107.21943 * 64.99274 * 7 6 5 11 11 H 1.08005 * 119.99843 * 0.02562 * 10 7 6 12 12 C 1.37868 * 120.00157 * 179.97438 * 10 7 6 13 13 N 1.31519 * 119.99958 * 0.02562 * 12 10 7 14 14 Si 1.86800 * 120.00156 * 180.02562 * 12 10 7 15 15 H 1.48490 * 109.47256 * 90.00357 * 14 12 10 16 16 H 1.48507 * 109.47279 * 210.00365 * 14 12 10 17 17 H 1.48502 * 109.47353 * 330.00068 * 14 12 10 18 18 N 1.30718 * 108.94820 * 359.97438 * 4 3 2 19 19 N 1.34428 * 125.96273 * 180.02562 * 2 1 3 20 20 H 0.96998 * 126.82131 * 359.97438 * 19 2 1 21 21 H 1.09003 * 109.47179 * 89.97785 * 1 2 3 22 22 H 1.09004 * 109.47263 * 209.97548 * 1 2 3 23 23 H 1.09001 * 109.47979 * 329.97713 * 1 2 3 24 24 H 1.08999 * 109.46976 * 209.99632 * 5 4 3 25 25 H 1.08988 * 109.47287 * 330.00039 * 5 4 3 26 26 H 0.97002 * 120.00366 * 344.99347 * 6 5 4 27 27 H 0.97004 * 120.00005 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2752 1.0590 0.0000 4 6 3.5551 0.6889 -0.0006 5 6 4.7371 1.6238 -0.0013 6 7 5.1208 1.9269 1.3797 7 16 6.5920 2.6173 1.6978 8 8 6.6474 2.8138 3.1041 9 8 7.5552 1.8576 0.9807 10 6 6.5830 4.2225 0.9711 11 1 5.7087 4.5704 0.4411 12 6 7.6917 5.0347 1.0800 13 7 8.7563 4.6113 1.7259 14 14 7.6819 6.7367 0.3102 15 1 7.1706 7.7228 1.2957 16 1 9.0633 7.1072 -0.0896 17 1 6.8041 6.7332 -0.8876 18 7 3.6194 -0.6167 -0.0004 19 7 2.2964 -1.0881 -0.0005 20 1 2.0093 -2.0146 -0.0006 21 1 -0.3634 0.0004 -1.0277 22 1 -0.3634 -0.8902 0.5135 23 1 -0.3635 0.8897 0.5142 24 1 5.5739 1.1510 -0.5154 25 1 4.4697 2.5470 -0.5151 26 1 4.5130 1.7233 2.1078 27 1 9.5365 5.1826 1.8021 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000392590301.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:14 Heat of formation + Delta-G solvation = -44.019000 kcal Electronic energy + Delta-G solvation = -15567.969792 eV Core-core repulsion = 12680.618535 eV Total energy + Delta-G solvation = -2887.351257 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 246.057 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.22190 -37.45561 -36.54701 -36.15075 -35.14662 -33.49374 -33.39559 -29.18095 -28.23941 -27.43933 -22.55515 -21.68948 -21.01285 -19.40618 -18.96489 -18.24104 -17.38303 -16.96679 -16.40183 -15.95463 -15.48921 -15.32758 -14.62026 -14.18790 -13.94010 -13.68830 -13.56278 -13.25482 -12.97504 -12.78951 -12.54294 -12.51284 -12.43775 -12.25463 -11.21640 -11.21139 -11.18406 -11.01397 -10.60495 -10.31655 -8.72808 -7.46026 0.19198 0.59165 1.38362 1.39276 1.55758 1.67714 1.72906 2.25574 2.61197 2.92202 3.00780 3.48944 3.73294 3.88214 4.34548 4.44443 4.54062 4.74554 4.76950 4.94350 5.06633 5.19528 5.26097 5.32203 5.93455 6.19440 6.20862 6.81100 7.01949 8.24188 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.038490 B = 0.006026 C = 0.005558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.293068 B = 4645.482011 C = 5036.142538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.288 3.712 3 N -0.561 5.561 4 C 0.216 3.784 5 C 0.217 3.783 6 N -1.116 6.116 7 S 2.724 3.276 8 O -1.041 7.041 9 O -1.038 7.038 10 C -1.037 5.037 11 H 0.125 0.875 12 C 0.069 3.931 13 N -0.895 5.895 14 Si 0.994 3.006 15 H -0.256 1.256 16 H -0.263 1.263 17 H -0.245 1.245 18 N -0.329 5.329 19 N -0.470 5.470 20 H 0.458 0.542 21 H 0.113 0.887 22 H 0.115 0.885 23 H 0.100 0.900 24 H 0.091 0.909 25 H 0.103 0.897 26 H 0.412 0.588 27 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.889 -7.200 -6.014 20.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.010 3.990 3 N -0.292 5.292 4 C -0.068 4.068 5 C 0.088 3.912 6 N -0.874 5.874 7 S 2.825 3.175 8 O -1.031 7.031 9 O -1.028 7.028 10 C -1.171 5.171 11 H 0.143 0.857 12 C -0.144 4.144 13 N -0.526 5.526 14 Si 0.811 3.189 15 H -0.180 1.180 16 H -0.188 1.188 17 H -0.168 1.168 18 N -0.161 5.161 19 N -0.191 5.191 20 H 0.307 0.693 21 H 0.131 0.869 22 H 0.134 0.866 23 H 0.119 0.881 24 H 0.109 0.891 25 H 0.121 0.879 26 H 0.245 0.755 27 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -16.306 -7.649 -5.617 18.867 hybrid contribution -0.337 0.275 -0.037 0.437 sum -16.644 -7.374 -5.655 19.062 Atomic orbital electron populations 1.20685 0.79412 1.06694 1.06339 1.25422 0.98475 0.81735 0.93361 1.70372 1.01016 1.31430 1.26359 1.24020 0.93584 0.90115 0.99110 1.19348 0.91695 0.96645 0.83513 1.55383 1.38229 1.80730 1.13094 0.99851 0.70050 0.75341 0.72266 1.93315 1.86022 1.88291 1.35498 1.93311 1.60130 1.74220 1.75101 1.30866 1.09746 1.24353 1.52151 0.85654 1.26050 0.92146 1.05002 0.91160 1.69998 1.05452 1.40708 1.36446 0.85081 0.79271 0.74869 0.79637 1.18009 1.18769 1.16790 1.78004 0.99101 1.12426 1.26528 1.47939 1.02924 1.11222 1.57030 0.69290 0.86866 0.86643 0.88135 0.89126 0.87865 0.75511 0.89070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.55 10.51 71.23 0.75 0.20 15 2 C 0.29 5.83 8.24 138.22 1.14 6.97 15 3 N -0.56 -16.74 11.19 -179.73 -2.01 -18.75 15 4 C 0.22 7.37 7.54 138.63 1.04 8.41 15 5 C 0.22 8.21 6.85 85.63 0.59 8.79 15 6 N -1.12 -47.83 5.99 -190.80 -1.14 -48.97 15 7 S 2.72 150.41 5.02 -56.49 -0.28 150.13 15 8 O -1.04 -63.92 18.02 -128.00 -2.31 -66.23 15 9 O -1.04 -63.18 17.49 -128.00 -2.24 -65.42 15 10 C -1.04 -57.48 9.72 67.73 0.66 -56.82 15 11 H 0.13 6.20 7.81 -2.91 -0.02 6.18 15 12 C 0.07 3.88 5.46 84.65 0.46 4.34 15 13 N -0.89 -53.87 13.19 21.44 0.28 -53.59 15 14 Si 0.99 41.46 29.54 68.60 2.03 43.48 15 15 H -0.26 -10.13 7.11 99.48 0.71 -9.42 15 16 H -0.26 -10.36 7.11 99.48 0.71 -9.66 15 17 H -0.24 -9.47 7.11 99.48 0.71 -8.76 15 18 N -0.33 -10.52 12.80 -51.33 -0.66 -11.17 15 19 N -0.47 -9.66 7.45 -50.71 -0.38 -10.03 15 20 H 0.46 5.16 8.96 -213.10 -1.91 3.25 15 21 H 0.11 0.47 8.14 -2.39 -0.02 0.45 15 22 H 0.12 0.15 8.14 -2.39 -0.02 0.13 15 23 H 0.10 0.84 8.14 -2.39 -0.02 0.82 15 24 H 0.09 3.53 7.75 -2.39 -0.02 3.51 15 25 H 0.10 3.58 8.14 -2.39 -0.02 3.56 15 26 H 0.41 16.19 8.64 -96.74 -0.84 15.35 15 27 H 0.30 16.14 8.31 -92.71 -0.77 15.37 15 Total: -1.00 -84.30 264.35 -3.58 -87.89 By element: Atomic # 1 Polarization: 22.31 SS G_CDS: -1.52 Total: 20.79 kcal Atomic # 6 Polarization: -32.76 SS G_CDS: 4.64 Total: -28.12 kcal Atomic # 7 Polarization: -138.62 SS G_CDS: -3.91 Total: -142.52 kcal Atomic # 8 Polarization: -127.10 SS G_CDS: -4.54 Total: -131.64 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.48 kcal Atomic # 16 Polarization: 150.41 SS G_CDS: -0.28 Total: 150.13 kcal Total: -84.30 -3.58 -87.89 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000392590301.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.869 kcal (2) G-P(sol) polarization free energy of solvation -84.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds