Wall clock time and date at job start Mon Mar 30 2020 03:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 120.00013 * 2 1 4 4 H 1.48501 * 109.47133 * 240.00371 * 3 2 1 5 5 H 1.48500 * 109.47051 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47294 * 120.00143 * 3 2 1 7 7 C 1.37875 * 119.99831 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99700 * 180.02562 * 7 2 1 9 9 S 1.76200 * 120.00470 * 359.97438 * 7 2 1 10 10 O 1.42098 * 106.39860 * 66.45846 * 9 7 2 11 11 O 1.42095 * 106.39903 * 293.53928 * 9 7 2 12 12 N 1.65593 * 107.21939 * 180.02562 * 9 7 2 13 13 C 1.46508 * 120.00247 * 64.99901 * 12 9 7 14 14 C 1.52998 * 109.46976 * 164.99715 * 13 12 9 15 15 N 1.46902 * 109.47158 * 179.97438 * 14 13 12 16 16 C 1.48221 * 111.00247 * 170.00122 * 15 14 13 17 17 C 1.51125 * 105.44007 * 144.85390 * 16 15 14 18 18 C 1.31118 * 109.36885 * 343.14410 * 17 16 15 19 19 C 1.48226 * 110.99914 * 283.64385 * 15 14 13 20 20 H 0.97002 * 120.00251 * 359.97438 * 1 2 3 21 21 H 0.97007 * 119.99917 * 245.00115 * 12 9 7 22 22 H 1.08997 * 109.46873 * 44.99698 * 13 12 9 23 23 H 1.08997 * 109.47188 * 284.99994 * 13 12 9 24 24 H 1.09005 * 109.47080 * 60.00449 * 14 13 12 25 25 H 1.08997 * 109.47390 * 300.00155 * 14 13 12 26 26 H 1.09002 * 110.26794 * 263.87454 * 16 15 14 27 27 H 1.09003 * 110.26777 * 25.83869 * 16 15 14 28 28 H 1.07997 * 125.26823 * 163.07536 * 17 16 15 29 29 H 1.07997 * 125.24482 * 179.97438 * 18 17 16 30 30 H 1.09000 * 110.27046 * 334.06789 * 19 15 14 31 31 H 1.09002 * 110.27137 * 96.03479 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 16 1.1235 -2.7200 -0.0005 10 8 0.4509 -2.7950 -1.2500 11 8 0.4519 -2.7956 1.2494 12 7 2.2483 -3.9354 -0.0005 13 6 3.1394 -4.1088 1.1493 14 6 3.8047 -5.4846 1.0760 15 7 4.6987 -5.6583 2.2286 16 6 5.1761 -7.0583 2.3244 17 6 6.5937 -6.9656 2.8399 18 6 7.0341 -5.7406 2.6833 19 6 5.9561 -4.8952 2.0453 20 1 -0.4850 0.8400 0.0004 21 1 2.3172 -4.5325 -0.7619 22 1 2.5623 -4.0329 2.0709 23 1 3.9055 -3.3336 1.1355 24 1 4.3818 -5.5604 0.1544 25 1 3.0386 -6.2599 1.0898 26 1 4.5565 -7.6215 3.0224 27 1 5.1616 -7.5302 1.3420 28 1 7.1550 -7.7814 3.2709 29 1 8.0162 -5.3906 2.9651 30 1 6.1630 -4.7574 0.9840 31 1 5.8875 -3.9287 2.5446 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000392835217.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:10 Heat of formation + Delta-G solvation = -59.042428 kcal Electronic energy + Delta-G solvation = -15900.104854 eV Core-core repulsion = 13115.642476 eV Total energy + Delta-G solvation = -2784.462378 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 246.082 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.50919 -35.36519 -34.95778 -33.90655 -33.05575 -31.91654 -28.51970 -27.03138 -26.09767 -22.77377 -21.08535 -19.45007 -18.94180 -17.45761 -16.44209 -16.12336 -15.54730 -15.26246 -14.71226 -14.30459 -13.88346 -13.57249 -13.21625 -12.74937 -12.60199 -12.33235 -11.99572 -11.56546 -11.41126 -11.20329 -11.18000 -11.06935 -10.59867 -10.29097 -10.24231 -10.14671 -9.62378 -9.20924 -8.98344 -8.45783 -8.37649 -6.66809 -5.28621 1.99695 2.36694 3.10700 3.14951 3.20505 3.87755 4.11242 4.55824 4.58246 4.67860 4.90198 5.13995 5.17241 5.36831 5.38696 5.45598 5.53509 5.65782 5.82274 5.84192 6.17163 6.21410 6.28165 6.47591 6.51800 6.77542 6.83766 6.97298 7.35236 7.92410 8.00534 8.92044 10.27475 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.031252 B = 0.005987 C = 0.005251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.739563 B = 4675.416646 C = 5330.882917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.133 3.867 3 Si 0.921 3.079 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.264 1.264 7 C -1.021 5.021 8 H 0.101 0.899 9 S 2.718 3.282 10 O -1.008 7.008 11 O -1.006 7.006 12 N -1.138 6.138 13 C 0.133 3.867 14 C 0.037 3.963 15 N -0.501 5.501 16 C 0.052 3.948 17 C -0.174 4.174 18 C -0.165 4.165 19 C 0.046 3.954 20 H 0.291 0.709 21 H 0.400 0.600 22 H 0.084 0.916 23 H 0.058 0.942 24 H 0.044 0.956 25 H 0.082 0.918 26 H 0.087 0.913 27 H 0.056 0.944 28 H 0.134 0.866 29 H 0.134 0.866 30 H 0.061 0.939 31 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.799 -10.059 3.107 16.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.085 4.085 3 Si 0.745 3.255 4 H -0.189 1.189 5 H -0.201 1.201 6 H -0.189 1.189 7 C -1.154 5.154 8 H 0.119 0.881 9 S 2.817 3.183 10 O -0.998 6.998 11 O -0.996 6.996 12 N -0.893 5.893 13 C 0.006 3.994 14 C -0.092 4.092 15 N -0.225 5.225 16 C -0.075 4.075 17 C -0.192 4.192 18 C -0.183 4.183 19 C -0.081 4.081 20 H 0.101 0.899 21 H 0.230 0.770 22 H 0.102 0.898 23 H 0.076 0.924 24 H 0.062 0.938 25 H 0.101 0.899 26 H 0.105 0.895 27 H 0.074 0.926 28 H 0.151 0.849 29 H 0.152 0.848 30 H 0.079 0.921 31 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 11.310 -9.811 3.753 15.436 hybrid contribution 1.581 0.685 -1.075 2.031 sum 12.891 -9.126 2.678 16.020 Atomic orbital electron populations 1.69888 1.06773 1.30795 1.40065 1.24739 0.94457 1.00787 0.88523 0.86204 0.79882 0.79756 0.79707 1.18944 1.20128 1.18863 1.30522 1.06010 1.11946 1.66914 0.88100 1.00319 0.71996 0.73178 0.72781 1.93372 1.73048 1.87675 1.45697 1.93359 1.72842 1.87467 1.45894 1.55978 1.55920 1.51176 1.26263 1.20885 0.93485 0.95245 0.89803 1.22610 0.96431 0.99103 0.91075 1.65530 1.12009 1.05661 1.39323 1.22068 0.93771 0.91376 1.00324 1.23589 0.96662 0.97971 1.01012 1.23658 0.99386 0.95637 0.99667 1.22223 0.87551 0.98718 0.99651 0.89854 0.76991 0.89759 0.92361 0.93801 0.89948 0.89496 0.92573 0.84857 0.84838 0.92120 0.89013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.08 13.19 55.43 0.73 -24.35 16 2 C 0.13 3.74 5.46 -17.82 -0.10 3.64 16 3 Si 0.92 20.69 29.54 -169.99 -5.02 15.67 16 4 H -0.26 -5.75 7.11 56.52 0.40 -5.35 16 5 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 6 H -0.26 -5.72 7.11 56.52 0.40 -5.32 16 7 C -1.02 -28.21 9.72 30.60 0.30 -27.91 16 8 H 0.10 2.54 7.81 -52.48 -0.41 2.13 16 9 S 2.72 72.43 5.02 -107.50 -0.54 71.89 16 10 O -1.01 -29.62 18.02 -57.17 -1.03 -30.65 16 11 O -1.01 -29.72 17.49 -57.17 -1.00 -30.72 16 12 N -1.14 -22.50 6.00 -10.61 -0.06 -22.57 16 13 C 0.13 2.32 6.36 -4.04 -0.03 2.30 16 14 C 0.04 0.51 4.80 -3.82 -0.02 0.49 16 15 N -0.50 -6.53 5.52 -234.68 -1.29 -7.82 16 16 C 0.05 0.55 6.62 -4.04 -0.03 0.53 16 17 C -0.17 -1.63 10.96 -35.85 -0.39 -2.02 16 18 C -0.17 -1.61 10.95 -35.85 -0.39 -2.00 16 19 C 0.05 0.54 6.08 -4.04 -0.02 0.51 16 20 H 0.29 7.77 8.31 -40.82 -0.34 7.43 16 21 H 0.40 6.72 8.65 -34.47 -0.30 6.42 16 22 H 0.08 1.61 7.75 -51.93 -0.40 1.20 16 23 H 0.06 0.98 7.75 -51.93 -0.40 0.58 16 24 H 0.04 0.54 7.64 -51.93 -0.40 0.14 16 25 H 0.08 1.07 8.08 -51.93 -0.42 0.65 16 26 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.06 0.55 7.79 -51.93 -0.40 0.14 16 28 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 29 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 30 H 0.06 0.69 7.48 -51.93 -0.39 0.30 16 31 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 280.71 15.07 4.23 4.23 Total: -1.00 -35.15 280.71 -8.62 -43.77 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -3.95 Total: 5.03 kcal Atomic # 6 Polarization: -23.79 SS G_CDS: -0.68 Total: -24.47 kcal Atomic # 7 Polarization: -54.11 SS G_CDS: -0.63 Total: -54.74 kcal Atomic # 8 Polarization: -59.35 SS G_CDS: -2.03 Total: -61.38 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 16 Polarization: 72.43 SS G_CDS: -0.54 Total: 71.89 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -35.15 -8.62 -43.77 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000392835217.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.272 kcal (2) G-P(sol) polarization free energy of solvation -35.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds