Wall clock time and date at job start Mon Mar 30 2020 03:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30859 * 1 3 3 Si 1.86798 * 119.99534 * 2 1 4 4 H 1.48511 * 109.47247 * 239.99640 * 3 2 1 5 5 H 1.48501 * 109.47673 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47269 * 120.00091 * 3 2 1 7 7 C 1.39915 * 120.00547 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00626 * 195.42875 * 7 2 1 9 9 C 1.41097 * 119.99855 * 15.41983 * 7 2 1 10 10 C 1.41213 * 120.03901 * 25.96011 * 9 7 2 11 11 C 1.35783 * 120.42772 * 180.23319 * 10 9 7 12 12 C 1.40463 * 120.21792 * 359.50035 * 11 10 9 13 13 N 1.34806 * 133.22629 * 180.23372 * 12 11 10 14 14 C 1.30345 * 109.89031 * 180.02562 * 13 12 11 15 15 N 1.35920 * 110.13532 * 359.97438 * 14 13 12 16 16 H 0.97003 * 126.45532 * 180.02562 * 15 14 13 17 17 C 1.38318 * 107.09840 * 0.02562 * 15 14 13 18 18 C 1.38016 * 133.95158 * 179.97438 * 17 15 14 19 19 C 1.50702 * 120.25139 * 0.05010 * 18 17 15 20 20 C 1.50696 * 109.46986 * 89.99645 * 19 18 17 21 21 O 1.20827 * 120.00359 * 0.02562 * 20 19 18 22 22 O 1.34230 * 119.99691 * 179.97438 * 20 19 18 23 23 H 0.96999 * 120.00629 * 0.02562 * 1 2 3 24 24 H 1.07999 * 119.79231 * 359.97438 * 10 9 7 25 25 H 1.08005 * 119.88929 * 179.77479 * 11 10 9 26 26 H 1.08005 * 124.93631 * 180.02562 * 14 13 12 27 27 H 1.08997 * 109.46804 * 210.00072 * 19 18 17 28 28 H 1.08997 * 109.47161 * 329.99952 * 19 18 17 29 29 H 0.96702 * 117.00203 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 3.0963 1.6965 -1.2125 5 1 1.2775 2.7465 -0.0006 6 1 3.0962 1.6966 1.2125 7 6 2.0083 -1.2116 0.0005 8 1 3.0590 -1.2284 0.2493 9 6 1.3410 -2.4118 -0.3238 10 6 0.1951 -2.3828 -1.1486 11 6 -0.4559 -3.5325 -1.4619 12 6 0.0116 -4.7646 -0.9759 13 7 -0.4142 -6.0355 -1.1199 14 6 0.3693 -6.8430 -0.4618 15 7 1.3570 -6.1395 0.1521 16 1 2.0677 -6.5041 0.7026 17 6 1.1581 -4.8058 -0.1558 18 6 1.8195 -3.6388 0.1689 19 6 3.0455 -3.6793 1.0444 20 6 4.2725 -3.8360 0.1836 21 8 4.1628 -3.9070 -1.0176 22 8 5.4873 -3.8957 0.7513 23 1 -0.4851 0.8400 -0.0004 24 1 -0.1683 -1.4397 -1.5293 25 1 -1.3336 -3.4998 -2.0905 26 1 0.2513 -7.9154 -0.4122 27 1 3.1166 -2.7522 1.6131 28 1 2.9736 -4.5224 1.7314 29 1 6.2446 -3.9962 0.1583 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396072485.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:34 Heat of formation + Delta-G solvation = -56.329442 kcal Electronic energy + Delta-G solvation = -17457.180270 eV Core-core repulsion = 14537.391585 eV Total energy + Delta-G solvation = -2919.788685 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.48763 -40.99379 -38.30333 -36.90506 -35.07348 -34.41158 -32.08980 -30.54731 -28.72378 -26.72598 -23.53859 -22.82848 -22.52622 -21.02933 -19.52794 -18.93933 -18.07863 -17.32231 -17.18337 -16.95686 -16.59911 -15.68420 -15.58752 -14.92231 -14.40946 -14.19328 -13.81340 -13.61252 -13.25599 -13.09821 -12.79755 -12.45749 -12.37232 -12.03123 -11.81185 -11.66684 -11.50048 -11.20056 -10.88287 -10.54302 -8.95342 -8.85853 -8.56300 -6.31506 0.55279 1.16918 1.39689 1.41120 1.49408 1.53004 2.11798 2.20497 2.47463 2.51822 2.84283 3.72863 3.86808 4.06661 4.35198 4.44159 4.72313 4.76878 4.90840 4.95335 5.03709 5.13579 5.37047 5.68907 5.72914 5.75893 5.98203 6.06143 6.25003 6.55238 6.87670 6.89265 6.97347 7.17989 7.42256 8.28034 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.020036 B = 0.010091 C = 0.007127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.165377 B = 2774.155166 C = 3927.603259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.039 3.961 3 Si 0.979 3.021 4 H -0.267 1.267 5 H -0.267 1.267 6 H -0.253 1.253 7 C -0.470 4.470 8 H 0.081 0.919 9 C 0.119 3.881 10 C -0.152 4.152 11 C -0.080 4.080 12 C -0.083 4.083 13 N -0.528 5.528 14 C 0.211 3.789 15 N -0.603 5.603 16 H 0.427 0.573 17 C 0.102 3.898 18 C -0.237 4.237 19 C -0.034 4.034 20 C 0.478 3.522 21 O -0.546 6.546 22 O -0.514 6.514 23 H 0.292 0.708 24 H 0.116 0.884 25 H 0.103 0.897 26 H 0.252 0.748 27 H 0.112 0.888 28 H 0.111 0.889 29 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.189 -5.047 4.594 9.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.178 4.178 3 Si 0.800 3.200 4 H -0.191 1.191 5 H -0.191 1.191 6 H -0.176 1.176 7 C -0.498 4.498 8 H 0.099 0.901 9 C 0.115 3.885 10 C -0.172 4.172 11 C -0.100 4.100 12 C -0.199 4.199 13 N -0.248 5.248 14 C -0.074 4.074 15 N -0.218 5.218 16 H 0.267 0.733 17 C -0.008 4.008 18 C -0.243 4.243 19 C -0.071 4.071 20 C 0.322 3.678 21 O -0.435 6.435 22 O -0.327 6.327 23 H 0.103 0.897 24 H 0.134 0.866 25 H 0.122 0.878 26 H 0.268 0.732 27 H 0.130 0.870 28 H 0.129 0.871 29 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges 5.824 -5.059 4.019 8.699 hybrid contribution 1.442 0.750 -0.034 1.625 sum 7.266 -4.309 3.985 9.340 Atomic orbital electron populations 1.69855 1.08959 1.31104 1.33912 1.26764 0.95463 1.04481 0.91071 0.85285 0.78885 0.75739 0.80140 1.19125 1.19118 1.17637 1.19649 0.97330 0.91388 1.41465 0.90079 1.17496 0.90868 0.92143 0.87988 1.21034 0.98596 0.96598 1.00978 1.19855 0.99424 0.90323 1.00404 1.18786 0.99730 0.92278 1.09092 1.69718 1.29901 1.00822 1.24408 1.25713 0.86806 0.99982 0.94886 1.42855 1.28189 1.04642 1.46067 0.73270 1.18587 0.97728 0.85176 0.99287 1.18053 1.02905 0.90276 1.13093 1.19755 0.85871 1.05553 0.95958 1.24198 0.85095 0.70703 0.87814 1.90692 1.87442 1.46878 1.18506 1.84529 1.17209 1.84991 1.46000 0.89665 0.86603 0.87840 0.73209 0.87030 0.87065 0.71995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.37 10.89 21.82 0.24 -40.13 15 2 C 0.04 1.86 5.17 85.24 0.44 2.30 15 3 Si 0.98 36.10 29.59 68.60 2.03 38.13 15 4 H -0.27 -9.94 7.11 99.48 0.71 -9.23 15 5 H -0.27 -9.35 7.11 99.48 0.71 -8.64 15 6 H -0.25 -8.81 7.11 99.48 0.71 -8.10 15 7 C -0.47 -23.66 8.12 23.38 0.19 -23.47 15 8 H 0.08 3.89 6.80 -2.91 -0.02 3.87 15 9 C 0.12 6.25 5.57 -21.27 -0.12 6.13 15 10 C -0.15 -8.15 8.59 22.43 0.19 -7.96 15 11 C -0.08 -4.15 10.02 22.24 0.22 -3.92 15 12 C -0.08 -4.13 7.23 39.91 0.29 -3.84 15 13 N -0.53 -23.42 11.23 -191.66 -2.15 -25.57 15 14 C 0.21 7.02 12.97 180.03 2.33 9.35 15 15 N -0.60 -20.51 6.25 -191.06 -1.19 -21.71 15 16 H 0.43 10.75 8.96 -92.71 -0.83 9.92 15 17 C 0.10 4.65 6.95 38.75 0.27 4.92 15 18 C -0.24 -11.08 4.44 -19.34 -0.09 -11.16 15 19 C -0.03 -1.26 5.34 29.10 0.16 -1.10 15 20 C 0.48 17.30 8.27 71.23 0.59 17.89 15 21 O -0.55 -24.54 16.79 21.96 0.37 -24.17 15 22 O -0.51 -13.56 13.42 -51.42 -0.69 -14.25 15 23 H 0.29 13.12 8.30 -92.71 -0.77 12.35 15 24 H 0.12 6.33 6.14 -2.91 -0.02 6.31 15 25 H 0.10 5.00 8.06 -2.91 -0.02 4.98 15 26 H 0.25 5.00 8.06 -2.91 -0.02 4.97 15 27 H 0.11 4.12 6.77 -2.39 -0.02 4.10 15 28 H 0.11 3.28 8.09 -2.39 -0.02 3.26 15 29 H 0.42 7.30 9.10 -74.06 -0.67 6.63 15 Total: -1.00 -70.95 262.43 2.80 -68.15 By element: Atomic # 1 Polarization: 30.70 SS G_CDS: -0.27 Total: 30.42 kcal Atomic # 6 Polarization: -15.34 SS G_CDS: 4.48 Total: -10.87 kcal Atomic # 7 Polarization: -84.30 SS G_CDS: -3.11 Total: -87.41 kcal Atomic # 8 Polarization: -38.10 SS G_CDS: -0.32 Total: -38.43 kcal Atomic # 14 Polarization: 36.10 SS G_CDS: 2.03 Total: 38.13 kcal Total: -70.95 2.80 -68.15 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396072485.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.816 kcal (2) G-P(sol) polarization free energy of solvation -70.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds