Wall clock time and date at job start Mon Mar 30 2020 03:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30805 * 1 3 3 Si 1.86807 * 120.00088 * 2 1 4 4 H 1.48497 * 109.46986 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.46845 * 120.00182 * 3 2 1 6 6 H 1.48503 * 109.47024 * 239.99736 * 3 2 1 7 7 C 1.40052 * 120.00024 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00084 * 154.36027 * 7 2 1 9 9 C 1.40696 * 119.99702 * 334.36340 * 7 2 1 10 10 C 1.40761 * 120.68325 * 334.64190 * 9 7 2 11 11 C 1.37669 * 120.14363 * 179.75730 * 10 9 7 12 12 C 1.38421 * 121.41613 * 0.51049 * 11 10 9 13 13 C 1.50692 * 119.52162 * 179.77101 * 12 11 10 14 14 C 1.50702 * 109.47721 * 264.97957 * 13 12 11 15 15 O 1.20833 * 119.99379 * 0.02562 * 14 13 12 16 16 O 1.34220 * 120.00238 * 179.97438 * 14 13 12 17 17 C 1.38802 * 120.95620 * 359.75407 * 12 11 10 18 18 N 1.38129 * 134.11401 * 179.97438 * 17 12 11 19 19 H 0.97002 * 126.43606 * 359.97438 * 18 17 12 20 20 C 1.35857 * 107.12697 * 180.02562 * 18 17 12 21 21 N 1.30480 * 109.94918 * 0.02562 * 20 18 17 22 22 C 1.34315 * 109.76027 * 0.02562 * 21 20 18 23 23 H 0.96996 * 119.99988 * 174.36451 * 1 2 3 24 24 H 1.08001 * 119.92878 * 0.02562 * 10 9 7 25 25 H 1.08006 * 119.28912 * 180.26488 * 11 10 9 26 26 H 1.08997 * 109.47244 * 24.98485 * 13 12 11 27 27 H 1.09010 * 109.46859 * 144.97847 * 13 12 11 28 28 H 0.96697 * 116.99932 * 179.97438 * 16 14 13 29 29 H 1.08001 * 125.02831 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 1.2771 2.7465 -0.0006 5 1 3.0959 1.6963 1.2125 6 1 3.0959 1.6964 -1.2125 7 6 2.0083 -1.2129 0.0005 8 1 3.0086 -1.2591 -0.4042 9 6 1.4087 -2.3711 0.5283 10 6 0.3961 -2.2760 1.5014 11 6 -0.1866 -3.4165 2.0066 12 6 0.2077 -4.6750 1.5863 13 6 -0.4557 -5.8949 2.1716 14 6 0.3691 -6.4121 3.3220 15 8 1.3906 -5.8475 3.6348 16 8 -0.0316 -7.4991 3.9998 17 6 1.2048 -4.8296 0.6332 18 7 1.7979 -5.9220 0.0307 19 1 1.5895 -6.8548 0.1959 20 6 2.7288 -5.4444 -0.8360 21 7 2.7421 -4.1401 -0.8008 22 6 1.8304 -3.7003 0.0820 23 1 -0.4850 -0.8360 -0.0825 24 1 0.0725 -1.3061 1.8494 25 1 -0.9653 -3.3273 2.7496 26 1 -1.4514 -5.6313 2.5280 27 1 -0.5363 -6.6671 1.4063 28 1 0.5306 -7.7934 4.7295 29 1 3.3639 -6.0541 -1.4616 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396074324.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:35 Heat of formation + Delta-G solvation = -40.782073 kcal Electronic energy + Delta-G solvation = -17200.974800 eV Core-core repulsion = 14281.860299 eV Total energy + Delta-G solvation = -2919.114501 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.82815 -39.72466 -36.43010 -35.74927 -34.23933 -32.10176 -30.31785 -28.29397 -27.61412 -24.54971 -21.98483 -21.39040 -20.79683 -19.62853 -18.38434 -17.73535 -16.31556 -16.02489 -15.78263 -15.42222 -14.34894 -14.18975 -13.94170 -13.63326 -12.87437 -12.73085 -12.40592 -12.35693 -11.61615 -11.31804 -11.15717 -10.91906 -10.49474 -10.44345 -10.26636 -10.04875 -9.85545 -9.48059 -9.12368 -8.75675 -7.53740 -7.25706 -7.04236 -4.47464 2.24219 2.61228 2.88460 3.11129 3.17578 3.32218 3.49232 3.89041 3.93088 4.03409 4.44454 5.37393 5.39962 5.42333 5.54082 5.84452 5.94320 6.10739 6.26360 6.59267 6.68960 6.77344 6.99214 7.27103 7.40490 7.57399 7.65923 7.83557 7.99161 8.18124 8.27571 8.38467 8.53806 8.65971 9.18288 9.80145 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.029330 B = 0.007107 C = 0.006191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.416284 B = 3938.951398 C = 4521.697047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.033 3.967 3 Si 1.069 2.931 4 H -0.271 1.271 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.454 4.454 8 H 0.089 0.911 9 C 0.152 3.848 10 C -0.280 4.280 11 C -0.010 4.010 12 C -0.263 4.263 13 C -0.034 4.034 14 C 0.459 3.541 15 O -0.498 6.498 16 O -0.531 6.531 17 C 0.123 3.877 18 N -0.609 5.609 19 H 0.404 0.596 20 C 0.152 3.848 21 N -0.461 5.461 22 C -0.043 4.043 23 H 0.307 0.693 24 H 0.111 0.889 25 H 0.093 0.907 26 H 0.097 0.903 27 H 0.083 0.917 28 H 0.398 0.602 29 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.356 -8.417 2.502 8.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.386 5.386 2 C -0.192 4.192 3 Si 0.891 3.109 4 H -0.195 1.195 5 H -0.196 1.196 6 H -0.197 1.197 7 C -0.480 4.480 8 H 0.107 0.893 9 C 0.147 3.853 10 C -0.301 4.301 11 C -0.030 4.030 12 C -0.268 4.268 13 C -0.071 4.071 14 C 0.301 3.699 15 O -0.383 6.383 16 O -0.344 6.344 17 C 0.011 3.989 18 N -0.221 5.221 19 H 0.239 0.761 20 C -0.130 4.130 21 N -0.179 5.179 22 C -0.165 4.165 23 H 0.121 0.879 24 H 0.129 0.871 25 H 0.112 0.888 26 H 0.116 0.884 27 H 0.101 0.899 28 H 0.256 0.744 29 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -1.020 -5.848 1.778 6.197 hybrid contribution 0.008 -3.191 1.025 3.351 sum -1.012 -9.038 2.802 9.517 Atomic orbital electron populations 1.70420 1.08277 1.35158 1.24782 1.27357 0.95655 1.04789 0.91426 0.83578 0.75713 0.73109 0.78496 1.19547 1.19569 1.19675 1.20834 1.03102 0.93439 1.30626 0.89290 1.17875 0.89795 0.88477 0.89194 1.20609 1.06935 0.97051 1.05494 1.20049 0.96116 0.91354 0.95446 1.16941 1.08274 0.92242 1.09359 1.19849 0.98052 0.97130 0.92114 1.24574 0.85260 0.76692 0.83377 1.90729 1.25086 1.56681 1.65835 1.84604 1.56461 1.45966 1.47337 1.18387 0.96823 0.86764 0.96892 1.42844 1.34442 1.07581 1.37201 0.76077 1.24555 0.97683 0.91360 0.99438 1.69553 1.20638 1.08160 1.19559 1.19864 1.01281 0.93231 1.02092 0.87927 0.87143 0.88843 0.88436 0.89882 0.74443 0.79105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.43 12.33 55.55 0.68 -18.75 15 2 C 0.03 0.82 4.94 -17.31 -0.09 0.73 15 3 Si 1.07 20.90 30.00 -169.99 -5.10 15.80 15 4 H -0.27 -5.18 7.11 56.52 0.40 -4.78 15 5 H -0.27 -5.15 7.11 56.52 0.40 -4.74 15 6 H -0.27 -5.08 7.11 56.52 0.40 -4.68 15 7 C -0.45 -12.17 9.02 -37.97 -0.34 -12.51 15 8 H 0.09 2.41 7.96 -52.49 -0.42 1.99 15 9 C 0.15 4.12 5.45 -104.72 -0.57 3.55 15 10 C -0.28 -7.10 7.96 -38.84 -0.31 -7.41 15 11 C -0.01 -0.23 9.56 -39.72 -0.38 -0.61 15 12 C -0.26 -5.68 4.39 -104.35 -0.46 -6.13 15 13 C -0.03 -0.56 5.92 -29.04 -0.17 -0.73 15 14 C 0.46 7.74 8.32 36.01 0.30 8.04 15 15 O -0.50 -10.56 16.79 -18.76 -0.31 -10.87 15 16 O -0.53 -6.79 13.42 -39.23 -0.53 -7.32 15 17 C 0.12 2.83 6.96 -84.01 -0.58 2.25 15 18 N -0.61 -11.55 6.24 -11.75 -0.07 -11.62 15 19 H 0.40 5.98 8.96 -40.82 -0.37 5.61 15 20 C 0.15 2.98 12.98 -89.64 -1.16 1.81 15 21 N -0.46 -11.42 11.22 -10.59 -0.12 -11.54 15 22 C -0.04 -1.14 7.20 -82.68 -0.60 -1.74 15 23 H 0.31 7.99 6.70 -40.82 -0.27 7.72 15 24 H 0.11 2.82 6.51 -52.49 -0.34 2.48 15 25 H 0.09 1.84 8.04 -52.48 -0.42 1.42 15 26 H 0.10 1.40 8.03 -51.93 -0.42 0.98 15 27 H 0.08 1.19 8.11 -51.92 -0.42 0.77 15 28 H 0.40 3.43 9.10 45.56 0.41 3.85 15 29 H 0.19 2.74 8.06 -52.49 -0.42 2.31 15 LS Contribution 265.51 15.07 4.00 4.00 Total: -1.00 -32.83 265.51 -7.27 -40.11 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -1.46 Total: 12.94 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: -4.36 Total: -12.74 kcal Atomic # 7 Polarization: -42.41 SS G_CDS: 0.49 Total: -41.91 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: -0.84 Total: -18.20 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.10 Total: 15.80 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -32.83 -7.27 -40.11 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396074324.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.677 kcal (2) G-P(sol) polarization free energy of solvation -32.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds