Wall clock time and date at job start Mon Mar 30 2020 03:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30805 * 1 3 3 Si 1.86807 * 120.00088 * 2 1 4 4 H 1.48497 * 109.46986 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.46845 * 120.00182 * 3 2 1 6 6 H 1.48503 * 109.47024 * 239.99736 * 3 2 1 7 7 C 1.40052 * 120.00024 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00084 * 154.36027 * 7 2 1 9 9 C 1.40696 * 119.99702 * 334.36340 * 7 2 1 10 10 C 1.40761 * 120.68325 * 334.64190 * 9 7 2 11 11 C 1.37669 * 120.14363 * 179.75730 * 10 9 7 12 12 C 1.38421 * 121.41613 * 0.51049 * 11 10 9 13 13 C 1.50692 * 119.52162 * 179.77101 * 12 11 10 14 14 C 1.50702 * 109.47721 * 264.97957 * 13 12 11 15 15 O 1.20833 * 119.99379 * 0.02562 * 14 13 12 16 16 O 1.34220 * 120.00238 * 179.97438 * 14 13 12 17 17 C 1.38802 * 120.95620 * 359.75407 * 12 11 10 18 18 N 1.38129 * 134.11401 * 179.97438 * 17 12 11 19 19 H 0.97002 * 126.43606 * 359.97438 * 18 17 12 20 20 C 1.35857 * 107.12697 * 180.02562 * 18 17 12 21 21 N 1.30480 * 109.94918 * 0.02562 * 20 18 17 22 22 C 1.34315 * 109.76027 * 0.02562 * 21 20 18 23 23 H 0.96996 * 119.99988 * 174.36451 * 1 2 3 24 24 H 1.08001 * 119.92878 * 0.02562 * 10 9 7 25 25 H 1.08006 * 119.28912 * 180.26488 * 11 10 9 26 26 H 1.08997 * 109.47244 * 24.98485 * 13 12 11 27 27 H 1.09010 * 109.46859 * 144.97847 * 13 12 11 28 28 H 0.96697 * 116.99932 * 179.97438 * 16 14 13 29 29 H 1.08001 * 125.02831 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 1.2771 2.7465 -0.0006 5 1 3.0959 1.6963 1.2125 6 1 3.0959 1.6964 -1.2125 7 6 2.0083 -1.2129 0.0005 8 1 3.0086 -1.2591 -0.4042 9 6 1.4087 -2.3711 0.5283 10 6 0.3961 -2.2760 1.5014 11 6 -0.1866 -3.4165 2.0066 12 6 0.2077 -4.6750 1.5863 13 6 -0.4557 -5.8949 2.1716 14 6 0.3691 -6.4121 3.3220 15 8 1.3906 -5.8475 3.6348 16 8 -0.0316 -7.4991 3.9998 17 6 1.2048 -4.8296 0.6332 18 7 1.7979 -5.9220 0.0307 19 1 1.5895 -6.8548 0.1959 20 6 2.7288 -5.4444 -0.8360 21 7 2.7421 -4.1401 -0.8008 22 6 1.8304 -3.7003 0.0820 23 1 -0.4850 -0.8360 -0.0825 24 1 0.0725 -1.3061 1.8494 25 1 -0.9653 -3.3273 2.7496 26 1 -1.4514 -5.6313 2.5280 27 1 -0.5363 -6.6671 1.4063 28 1 0.5306 -7.7934 4.7295 29 1 3.3639 -6.0541 -1.4616 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396074324.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:35 Heat of formation + Delta-G solvation = -63.645422 kcal Electronic energy + Delta-G solvation = -17201.966229 eV Core-core repulsion = 14281.860299 eV Total energy + Delta-G solvation = -2920.105930 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.54722 -41.06515 -38.17566 -37.05953 -35.96500 -33.83829 -31.95582 -30.08563 -29.32151 -26.29984 -23.61068 -22.98705 -22.50468 -21.26869 -20.15560 -19.00256 -17.99864 -17.58533 -17.26839 -16.80030 -16.09515 -15.83139 -15.64229 -15.34095 -14.51687 -14.21305 -14.03373 -13.91493 -13.11929 -12.96313 -12.58317 -12.48004 -12.23160 -12.04408 -11.92138 -11.63710 -11.55284 -11.21131 -10.90246 -10.53211 -9.42760 -9.06276 -8.87573 -6.39379 0.47579 1.07162 1.30652 1.49642 1.61306 1.81040 2.08496 2.28387 2.36412 2.41579 2.68877 3.54978 3.80495 3.93808 4.22546 4.39415 4.54549 4.63669 4.73067 4.84493 4.92072 5.18065 5.42819 5.50638 5.65977 5.68063 5.85476 5.97900 6.14023 6.34853 6.64206 6.75773 6.91932 7.10199 7.43973 7.89558 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.029330 B = 0.007107 C = 0.006191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.416284 B = 3938.951398 C = 4521.697047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.005 3.995 3 Si 1.118 2.882 4 H -0.261 1.261 5 H -0.264 1.264 6 H -0.259 1.259 7 C -0.506 4.506 8 H 0.067 0.933 9 C 0.118 3.882 10 C -0.297 4.297 11 C -0.027 4.027 12 C -0.238 4.238 13 C -0.037 4.037 14 C 0.475 3.525 15 O -0.550 6.550 16 O -0.512 6.512 17 C 0.103 3.897 18 N -0.591 5.591 19 H 0.428 0.572 20 C 0.193 3.807 21 N -0.521 5.521 22 C -0.083 4.083 23 H 0.290 0.710 24 H 0.095 0.905 25 H 0.123 0.877 26 H 0.128 0.872 27 H 0.116 0.884 28 H 0.421 0.579 29 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.772 -11.485 3.002 12.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.214 4.214 3 Si 0.934 3.066 4 H -0.185 1.185 5 H -0.189 1.189 6 H -0.184 1.184 7 C -0.532 4.532 8 H 0.085 0.915 9 C 0.114 3.886 10 C -0.319 4.319 11 C -0.046 4.046 12 C -0.243 4.243 13 C -0.074 4.074 14 C 0.319 3.681 15 O -0.439 6.439 16 O -0.326 6.326 17 C -0.009 4.009 18 N -0.204 5.204 19 H 0.268 0.732 20 C -0.091 4.091 21 N -0.240 5.240 22 C -0.202 4.202 23 H 0.103 0.897 24 H 0.113 0.887 25 H 0.141 0.859 26 H 0.146 0.854 27 H 0.134 0.866 28 H 0.282 0.718 29 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -1.477 -8.990 2.312 9.400 hybrid contribution 0.129 -2.739 0.909 2.889 sum -1.348 -11.730 3.221 12.239 Atomic orbital electron populations 1.70520 1.08679 1.33870 1.27783 1.28633 0.95720 1.07292 0.89800 0.83007 0.74901 0.69553 0.79144 1.18507 1.18861 1.18378 1.20794 1.02907 0.95147 1.34366 0.91466 1.18285 0.90819 0.89559 0.89940 1.20611 1.07706 0.97598 1.05946 1.20429 0.96904 0.91194 0.96099 1.17479 1.05990 0.93886 1.06927 1.19925 0.98718 0.95695 0.93091 1.24247 0.83994 0.76819 0.83065 1.90749 1.27313 1.58481 1.67400 1.84518 1.56372 1.43913 1.47774 1.18584 0.97481 0.87216 0.97653 1.42776 1.33450 1.08064 1.36118 0.73155 1.25741 0.95701 0.90494 0.97157 1.69536 1.22262 1.10892 1.21307 1.20235 1.02593 0.94103 1.03295 0.89709 0.88654 0.85880 0.85395 0.86630 0.71769 0.73370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -42.52 12.33 21.85 0.27 -42.25 15 2 C 0.00 0.25 4.94 85.29 0.42 0.67 15 3 Si 1.12 44.17 30.00 68.60 2.06 46.22 15 4 H -0.26 -9.76 7.11 99.48 0.71 -9.06 15 5 H -0.26 -10.00 7.11 99.48 0.71 -9.29 15 6 H -0.26 -9.59 7.11 99.48 0.71 -8.88 15 7 C -0.51 -29.20 9.02 23.31 0.21 -28.99 15 8 H 0.07 3.98 7.96 -2.91 -0.02 3.96 15 9 C 0.12 6.83 5.45 -19.93 -0.11 6.72 15 10 C -0.30 -15.85 7.96 22.75 0.18 -15.67 15 11 C -0.03 -1.21 9.56 22.18 0.21 -1.00 15 12 C -0.24 -9.81 4.39 -19.69 -0.09 -9.90 15 13 C -0.04 -1.06 5.92 29.10 0.17 -0.89 15 14 C 0.47 14.08 8.32 71.24 0.59 14.67 15 15 O -0.55 -22.00 16.79 21.94 0.37 -21.63 15 16 O -0.51 -10.52 13.42 -51.32 -0.69 -11.21 15 17 C 0.10 4.61 6.96 38.81 0.27 4.88 15 18 N -0.59 -20.35 6.24 -191.09 -1.19 -21.54 15 19 H 0.43 10.52 8.96 -92.71 -0.83 9.69 15 20 C 0.19 6.99 12.98 180.01 2.34 9.33 15 21 N -0.52 -25.85 11.22 -187.42 -2.10 -27.95 15 22 C -0.08 -4.47 7.20 41.42 0.30 -4.17 15 23 H 0.29 16.29 6.70 -92.71 -0.62 15.67 15 24 H 0.10 5.23 6.51 -2.91 -0.02 5.21 15 25 H 0.12 4.70 8.04 -2.91 -0.02 4.67 15 26 H 0.13 2.99 8.03 -2.39 -0.02 2.97 15 27 H 0.12 2.64 8.11 -2.38 -0.02 2.62 15 28 H 0.42 5.25 9.10 -74.06 -0.67 4.58 15 29 H 0.25 5.76 8.06 -2.91 -0.02 5.73 15 Total: -1.00 -77.90 265.51 3.08 -74.83 By element: Atomic # 1 Polarization: 28.01 SS G_CDS: -0.13 Total: 27.87 kcal Atomic # 6 Polarization: -28.85 SS G_CDS: 4.50 Total: -24.35 kcal Atomic # 7 Polarization: -88.71 SS G_CDS: -3.03 Total: -91.74 kcal Atomic # 8 Polarization: -32.52 SS G_CDS: -0.32 Total: -32.84 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.06 Total: 46.22 kcal Total: -77.90 3.08 -74.83 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396074324.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.181 kcal (2) G-P(sol) polarization free energy of solvation -77.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds