Wall clock time and date at job start Mon Mar 30 2020 03:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30838 * 1 3 3 Si 1.86797 * 120.00584 * 2 1 4 4 H 1.48497 * 109.47371 * 89.99623 * 3 2 1 5 5 H 1.48502 * 109.47244 * 210.00148 * 3 2 1 6 6 H 1.48505 * 109.46687 * 329.99706 * 3 2 1 7 7 C 1.39979 * 119.99851 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00376 * 159.93112 * 7 2 1 9 9 C 1.40994 * 119.99731 * 339.94060 * 7 2 1 10 10 C 1.41238 * 120.34073 * 325.09900 * 9 7 2 11 11 N 1.37346 * 134.03836 * 0.73277 * 10 9 7 12 12 H 0.97001 * 126.30451 * 359.23769 * 11 10 9 13 13 C 1.36026 * 107.39474 * 179.50811 * 11 10 9 14 14 N 1.30138 * 109.96446 * 359.74509 * 13 11 10 15 15 C 1.35826 * 109.49609 * 359.97438 * 14 13 11 16 16 C 1.40039 * 133.42817 * 180.02562 * 15 14 13 17 17 C 1.38186 * 120.31628 * 179.97438 * 16 15 14 18 18 C 1.37937 * 120.82992 * 359.97438 * 17 16 15 19 19 C 1.50702 * 119.92387 * 179.97438 * 18 17 16 20 20 C 1.50701 * 109.47439 * 265.02077 * 19 18 17 21 21 O 1.20825 * 119.99519 * 0.02562 * 20 19 18 22 22 O 1.34226 * 120.00183 * 180.02562 * 20 19 18 23 23 H 0.97002 * 119.99440 * 356.59793 * 1 2 3 24 24 H 1.07991 * 125.01469 * 179.72478 * 13 11 10 25 25 H 1.08007 * 119.84142 * 359.96860 * 16 15 14 26 26 H 1.08002 * 119.58264 * 179.97438 * 17 16 15 27 27 H 1.09003 * 109.47117 * 25.02534 * 19 18 17 28 28 H 1.09002 * 109.46729 * 145.01853 * 19 18 17 29 29 H 0.96694 * 117.00068 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2425 1.6176 0.0000 4 1 2.4900 2.0464 1.4000 5 1 3.5401 1.4400 -0.7001 6 1 1.4400 2.6526 -0.7001 7 6 2.0082 -1.2123 0.0005 8 1 3.0391 -1.2409 -0.3204 9 6 1.3673 -2.3960 0.4199 10 6 0.4107 -2.3600 1.4584 11 7 -0.1165 -1.3585 2.2365 12 1 0.1170 -0.4178 2.1976 13 6 -1.0218 -1.9296 3.0759 14 7 -1.0845 -3.2108 2.8566 15 6 -0.2225 -3.5431 1.8609 16 6 0.1076 -4.7526 1.2371 17 6 1.0479 -4.7815 0.2249 18 6 1.6764 -3.6256 -0.1894 19 6 2.6992 -3.6807 -1.2948 20 6 4.0786 -3.7902 -0.6980 21 8 4.2169 -3.8208 0.5020 22 8 5.1535 -3.8537 -1.4993 23 1 -0.4849 0.8386 0.0499 24 1 -1.6025 -1.3982 3.8152 25 1 -0.3749 -5.6672 1.5487 26 1 1.2938 -5.7209 -0.2478 27 1 2.5061 -4.5486 -1.9254 28 1 2.6341 -2.7735 -1.8955 29 1 6.0174 -3.9228 -1.0704 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396086754.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:33 Heat of formation + Delta-G solvation = -35.189294 kcal Electronic energy + Delta-G solvation = -17600.682384 eV Core-core repulsion = 14681.810404 eV Total energy + Delta-G solvation = -2918.871980 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.73589 -39.51236 -36.44703 -35.29450 -34.11111 -31.51115 -30.53338 -29.28935 -26.57825 -25.07172 -21.97202 -21.44316 -20.20452 -19.51103 -17.82924 -17.42415 -16.24735 -15.76091 -15.63092 -15.11349 -14.95540 -14.14461 -13.81526 -13.16933 -12.98704 -12.60301 -12.34161 -11.86356 -11.56568 -11.39103 -11.11300 -10.87486 -10.73121 -10.67641 -10.17754 -10.10409 -9.77987 -9.36963 -9.13898 -8.78653 -7.17128 -7.05726 -6.76712 -4.58569 2.27001 2.85578 2.91917 2.95159 2.96533 2.98735 3.72712 3.75211 4.02399 4.30600 4.53318 5.35765 5.43719 5.77719 5.90231 6.07391 6.24958 6.41059 6.44373 6.74670 6.80103 7.00144 7.02412 7.09163 7.15966 7.58245 7.85096 7.90014 8.05495 8.24582 8.51539 8.59500 8.61816 8.67185 9.11852 9.90311 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.015703 B = 0.013192 C = 0.007859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.633279 B = 2122.015502 C = 3561.961394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.070 3.930 3 Si 0.900 3.100 4 H -0.267 1.267 5 H -0.259 1.259 6 H -0.276 1.276 7 C -0.461 4.461 8 H 0.082 0.918 9 C 0.160 3.840 10 C 0.039 3.961 11 N -0.557 5.557 12 H 0.412 0.588 13 C 0.208 3.792 14 N -0.520 5.520 15 C 0.060 3.940 16 C -0.187 4.187 17 C -0.066 4.066 18 C -0.207 4.207 19 C -0.034 4.034 20 C 0.470 3.530 21 O -0.504 6.504 22 O -0.531 6.531 23 H 0.283 0.717 24 H 0.193 0.807 25 H 0.098 0.902 26 H 0.097 0.903 27 H 0.091 0.909 28 H 0.107 0.893 29 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.551 0.363 -1.508 3.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.146 4.146 3 Si 0.724 3.276 4 H -0.192 1.192 5 H -0.182 1.182 6 H -0.201 1.201 7 C -0.491 4.491 8 H 0.100 0.900 9 C 0.156 3.844 10 C -0.072 4.072 11 N -0.165 5.165 12 H 0.252 0.748 13 C -0.078 4.078 14 N -0.243 5.243 15 C -0.060 4.060 16 C -0.208 4.208 17 C -0.086 4.086 18 C -0.211 4.211 19 C -0.072 4.072 20 C 0.313 3.687 21 O -0.390 6.390 22 O -0.343 6.343 23 H 0.094 0.906 24 H 0.210 0.790 25 H 0.117 0.883 26 H 0.115 0.885 27 H 0.109 0.891 28 H 0.125 0.875 29 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 2.462 -0.048 -0.999 2.657 hybrid contribution 1.433 1.956 -0.038 2.425 sum 3.895 1.908 -1.037 4.459 Atomic orbital electron populations 1.69914 1.07229 1.29818 1.35581 1.25957 0.94747 1.01309 0.92606 0.86401 0.80962 0.80638 0.79602 1.19203 1.18245 1.20069 1.19425 0.98915 0.91320 1.39471 0.89998 1.16321 0.88191 0.92564 0.87313 1.19006 1.02703 0.87335 0.98185 1.42942 1.33465 1.10259 1.29852 0.74801 1.24818 0.94895 0.90509 0.97620 1.70284 1.23864 1.11744 1.18430 1.18854 0.96797 0.93946 0.96416 1.19432 1.05030 0.94261 1.02099 1.20137 0.96209 0.95951 0.96352 1.18613 1.05624 0.93474 1.03371 1.19813 0.85164 1.04355 0.97828 1.24319 0.87194 0.71527 0.85697 1.90686 1.86685 1.44803 1.16820 1.84602 1.18310 1.86259 1.45147 0.90584 0.78989 0.88334 0.88491 0.89129 0.87484 0.74702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -18.73 10.58 55.55 0.59 -18.15 15 2 C 0.07 1.60 4.41 -17.32 -0.08 1.53 15 3 Si 0.90 17.28 29.61 -169.99 -5.03 12.25 15 4 H -0.27 -5.06 7.11 56.52 0.40 -4.66 15 5 H -0.26 -5.03 7.11 56.52 0.40 -4.63 15 6 H -0.28 -5.21 7.11 56.52 0.40 -4.80 15 7 C -0.46 -11.32 7.84 -37.89 -0.30 -11.62 15 8 H 0.08 1.99 7.03 -52.48 -0.37 1.62 15 9 C 0.16 4.07 5.42 -106.80 -0.58 3.49 15 10 C 0.04 1.00 6.16 -83.56 -0.51 0.49 15 11 N -0.56 -12.48 5.18 -11.43 -0.06 -12.54 15 12 H 0.41 8.64 6.95 -40.82 -0.28 8.36 15 13 C 0.21 4.27 12.98 -89.77 -1.16 3.11 15 14 N -0.52 -12.42 11.29 -12.07 -0.14 -12.56 15 15 C 0.06 1.52 7.22 -84.73 -0.61 0.91 15 16 C -0.19 -4.45 10.10 -38.93 -0.39 -4.84 15 17 C -0.07 -1.48 9.61 -39.71 -0.38 -1.86 15 18 C -0.21 -4.79 4.44 -103.82 -0.46 -5.25 15 19 C -0.03 -0.65 5.31 -29.03 -0.15 -0.81 15 20 C 0.47 8.96 7.92 36.01 0.29 9.25 15 21 O -0.50 -11.45 16.79 -18.75 -0.31 -11.77 15 22 O -0.53 -7.93 13.42 -39.25 -0.53 -8.46 15 23 H 0.28 6.04 8.30 -40.82 -0.34 5.71 15 24 H 0.19 2.87 8.06 -52.49 -0.42 2.45 15 25 H 0.10 2.15 8.06 -52.48 -0.42 1.73 15 26 H 0.10 1.83 8.06 -52.49 -0.42 1.41 15 27 H 0.09 1.44 8.05 -51.93 -0.42 1.03 15 28 H 0.11 2.04 7.19 -51.93 -0.37 1.66 15 29 H 0.40 4.15 9.10 45.56 0.41 4.56 15 LS Contribution 260.39 15.07 3.92 3.92 Total: -1.00 -31.13 260.39 -7.34 -38.47 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -1.43 Total: 14.44 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: -4.35 Total: -5.61 kcal Atomic # 7 Polarization: -43.63 SS G_CDS: 0.39 Total: -43.24 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: -0.84 Total: -20.23 kcal Atomic # 14 Polarization: 17.28 SS G_CDS: -5.03 Total: 12.25 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -31.13 -7.34 -38.47 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396086754.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.280 kcal (2) G-P(sol) polarization free energy of solvation -31.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds