Wall clock time and date at job start Mon Mar 30 2020 03:46:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30838 * 1 3 3 Si 1.86797 * 120.00584 * 2 1 4 4 H 1.48497 * 109.47371 * 89.99623 * 3 2 1 5 5 H 1.48502 * 109.47244 * 210.00148 * 3 2 1 6 6 H 1.48505 * 109.46687 * 329.99706 * 3 2 1 7 7 C 1.39979 * 119.99851 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00376 * 159.93112 * 7 2 1 9 9 C 1.40994 * 119.99731 * 339.94060 * 7 2 1 10 10 C 1.41238 * 120.34073 * 325.09900 * 9 7 2 11 11 N 1.37346 * 134.03836 * 0.73277 * 10 9 7 12 12 H 0.97001 * 126.30451 * 359.23769 * 11 10 9 13 13 C 1.36026 * 107.39474 * 179.50811 * 11 10 9 14 14 N 1.30138 * 109.96446 * 359.74509 * 13 11 10 15 15 C 1.35826 * 109.49609 * 359.97438 * 14 13 11 16 16 C 1.40039 * 133.42817 * 180.02562 * 15 14 13 17 17 C 1.38186 * 120.31628 * 179.97438 * 16 15 14 18 18 C 1.37937 * 120.82992 * 359.97438 * 17 16 15 19 19 C 1.50702 * 119.92387 * 179.97438 * 18 17 16 20 20 C 1.50701 * 109.47439 * 265.02077 * 19 18 17 21 21 O 1.20825 * 119.99519 * 0.02562 * 20 19 18 22 22 O 1.34226 * 120.00183 * 180.02562 * 20 19 18 23 23 H 0.97002 * 119.99440 * 356.59793 * 1 2 3 24 24 H 1.07991 * 125.01469 * 179.72478 * 13 11 10 25 25 H 1.08007 * 119.84142 * 359.96860 * 16 15 14 26 26 H 1.08002 * 119.58264 * 179.97438 * 17 16 15 27 27 H 1.09003 * 109.47117 * 25.02534 * 19 18 17 28 28 H 1.09002 * 109.46729 * 145.01853 * 19 18 17 29 29 H 0.96694 * 117.00068 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2425 1.6176 0.0000 4 1 2.4900 2.0464 1.4000 5 1 3.5401 1.4400 -0.7001 6 1 1.4400 2.6526 -0.7001 7 6 2.0082 -1.2123 0.0005 8 1 3.0391 -1.2409 -0.3204 9 6 1.3673 -2.3960 0.4199 10 6 0.4107 -2.3600 1.4584 11 7 -0.1165 -1.3585 2.2365 12 1 0.1170 -0.4178 2.1976 13 6 -1.0218 -1.9296 3.0759 14 7 -1.0845 -3.2108 2.8566 15 6 -0.2225 -3.5431 1.8609 16 6 0.1076 -4.7526 1.2371 17 6 1.0479 -4.7815 0.2249 18 6 1.6764 -3.6256 -0.1894 19 6 2.6992 -3.6807 -1.2948 20 6 4.0786 -3.7902 -0.6980 21 8 4.2169 -3.8208 0.5020 22 8 5.1535 -3.8537 -1.4993 23 1 -0.4849 0.8386 0.0499 24 1 -1.6025 -1.3982 3.8152 25 1 -0.3749 -5.6672 1.5487 26 1 1.2938 -5.7209 -0.2478 27 1 2.5061 -4.5486 -1.9254 28 1 2.6341 -2.7735 -1.8955 29 1 6.0174 -3.9228 -1.0704 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396086754.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:32 Heat of formation + Delta-G solvation = -55.190788 kcal Electronic energy + Delta-G solvation = -17601.549714 eV Core-core repulsion = 14681.810404 eV Total energy + Delta-G solvation = -2919.739310 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.46545 -41.00358 -38.09176 -36.76712 -35.85449 -33.23618 -32.19771 -31.04824 -28.25651 -26.82262 -23.60297 -23.10717 -21.88501 -21.18432 -19.58654 -18.86874 -17.94357 -17.36919 -17.22433 -16.67407 -16.54376 -15.78557 -15.56410 -14.84438 -14.63396 -14.15914 -13.87966 -13.54979 -13.18845 -12.88842 -12.79188 -12.40847 -12.32603 -12.26115 -11.88333 -11.79086 -11.36121 -11.09929 -10.88847 -10.56803 -8.91224 -8.82749 -8.52686 -6.38962 0.54584 1.17356 1.35655 1.38039 1.46330 1.48088 2.14023 2.16468 2.53293 2.65057 2.77129 3.65987 3.79154 4.21434 4.29798 4.56427 4.72587 4.82912 4.89325 5.04555 5.07687 5.27820 5.31687 5.43555 5.78229 5.82169 6.07664 6.13018 6.28087 6.47812 6.76662 6.83801 6.99367 7.24440 7.36790 8.21975 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.015703 B = 0.013192 C = 0.007859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.633279 B = 2122.015502 C = 3561.961394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.043 3.957 3 Si 0.965 3.035 4 H -0.261 1.261 5 H -0.263 1.263 6 H -0.267 1.267 7 C -0.485 4.485 8 H 0.075 0.925 9 C 0.129 3.871 10 C 0.006 3.994 11 N -0.559 5.559 12 H 0.417 0.583 13 C 0.226 3.774 14 N -0.551 5.551 15 C 0.030 3.970 16 C -0.210 4.210 17 C -0.069 4.069 18 C -0.218 4.218 19 C -0.035 4.035 20 C 0.482 3.518 21 O -0.548 6.548 22 O -0.515 6.515 23 H 0.292 0.708 24 H 0.248 0.752 25 H 0.109 0.891 26 H 0.130 0.870 27 H 0.126 0.874 28 H 0.106 0.894 29 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.082 1.095 -1.943 4.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.172 4.172 3 Si 0.787 3.213 4 H -0.186 1.186 5 H -0.187 1.187 6 H -0.192 1.192 7 C -0.515 4.515 8 H 0.093 0.907 9 C 0.125 3.875 10 C -0.106 4.106 11 N -0.168 5.168 12 H 0.257 0.743 13 C -0.060 4.060 14 N -0.274 5.274 15 C -0.089 4.089 16 C -0.231 4.231 17 C -0.089 4.089 18 C -0.222 4.222 19 C -0.072 4.072 20 C 0.326 3.674 21 O -0.437 6.437 22 O -0.329 6.329 23 H 0.103 0.897 24 H 0.264 0.736 25 H 0.127 0.873 26 H 0.148 0.852 27 H 0.144 0.856 28 H 0.124 0.876 29 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges 3.016 0.669 -1.463 3.418 hybrid contribution 1.272 1.691 0.068 2.117 sum 4.288 2.361 -1.395 5.089 Atomic orbital electron populations 1.69940 1.08342 1.31086 1.35512 1.26571 0.95312 1.03659 0.91644 0.85425 0.79385 0.76821 0.79698 1.18606 1.18695 1.19188 1.19497 0.98748 0.92234 1.40976 0.90670 1.16776 0.88939 0.93871 0.87935 1.19301 1.03818 0.88222 0.99226 1.42973 1.33777 1.10159 1.29861 0.74283 1.25891 0.93409 0.89895 0.96841 1.70286 1.24675 1.13474 1.18961 1.19308 0.97583 0.94734 0.97273 1.19772 1.05976 0.94436 1.02958 1.20517 0.95301 0.97212 0.95824 1.19118 1.06089 0.93134 1.03821 1.19830 0.84600 1.05880 0.96885 1.24107 0.87942 0.70388 0.85006 1.90681 1.87380 1.47062 1.18621 1.84522 1.18874 1.85286 1.44168 0.89738 0.73622 0.87300 0.85193 0.85650 0.87592 0.72033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -38.27 10.58 21.83 0.23 -38.04 15 2 C 0.04 1.94 4.41 85.26 0.38 2.31 15 3 Si 0.97 34.79 29.61 68.60 2.03 36.82 15 4 H -0.26 -9.13 7.11 99.48 0.71 -8.42 15 5 H -0.26 -9.58 7.11 99.48 0.71 -8.87 15 6 H -0.27 -9.20 7.11 99.48 0.71 -8.50 15 7 C -0.48 -23.99 7.84 23.37 0.18 -23.80 15 8 H 0.08 3.69 7.03 -2.91 -0.02 3.67 15 9 C 0.13 6.63 5.42 -21.28 -0.12 6.52 15 10 C 0.01 0.30 6.16 39.47 0.24 0.54 15 11 N -0.56 -24.91 5.18 -190.08 -0.98 -25.90 15 12 H 0.42 17.29 6.95 -92.71 -0.64 16.65 15 13 C 0.23 9.01 12.98 180.05 2.34 11.35 15 14 N -0.55 -26.21 11.29 -192.09 -2.17 -28.38 15 15 C 0.03 1.55 7.22 39.41 0.28 1.84 15 16 C -0.21 -10.11 10.10 22.69 0.23 -9.88 15 17 C -0.07 -3.04 9.61 22.19 0.21 -2.83 15 18 C -0.22 -10.07 4.44 -19.34 -0.09 -10.16 15 19 C -0.03 -1.29 5.31 29.10 0.15 -1.13 15 20 C 0.48 17.72 7.92 71.24 0.56 18.28 15 21 O -0.55 -24.76 16.79 21.97 0.37 -24.39 15 22 O -0.52 -14.10 13.42 -51.38 -0.69 -14.79 15 23 H 0.29 12.21 8.30 -92.71 -0.77 11.44 15 24 H 0.25 6.58 8.06 -2.92 -0.02 6.55 15 25 H 0.11 4.80 8.06 -2.91 -0.02 4.78 15 26 H 0.13 4.70 8.06 -2.91 -0.02 4.68 15 27 H 0.13 3.68 8.05 -2.39 -0.02 3.66 15 28 H 0.11 3.96 7.19 -2.39 -0.02 3.94 15 29 H 0.42 7.64 9.10 -74.06 -0.67 6.97 15 Total: -1.00 -68.17 260.39 3.08 -65.09 By element: Atomic # 1 Polarization: 36.65 SS G_CDS: -0.09 Total: 36.56 kcal Atomic # 6 Polarization: -11.36 SS G_CDS: 4.38 Total: -6.97 kcal Atomic # 7 Polarization: -89.40 SS G_CDS: -2.92 Total: -92.32 kcal Atomic # 8 Polarization: -38.86 SS G_CDS: -0.32 Total: -39.18 kcal Atomic # 14 Polarization: 34.79 SS G_CDS: 2.03 Total: 36.82 kcal Total: -68.17 3.08 -65.09 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396086754.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.904 kcal (2) G-P(sol) polarization free energy of solvation -68.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds