Wall clock time and date at job start Mon Mar 30 2020 03:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30840 * 1 3 3 Si 1.86797 * 120.00297 * 2 1 4 4 H 1.48498 * 109.47531 * 270.00403 * 3 2 1 5 5 H 1.48503 * 109.46815 * 30.00517 * 3 2 1 6 6 H 1.48499 * 109.47237 * 149.99954 * 3 2 1 7 7 C 1.39979 * 119.99828 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00175 * 162.54870 * 7 2 1 9 9 C 1.40992 * 119.99946 * 342.55369 * 7 2 1 10 10 C 1.40694 * 120.34330 * 334.98395 * 9 7 2 11 11 C 1.37891 * 120.15677 * 179.97438 * 10 9 7 12 12 C 1.50700 * 119.58915 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.47173 * 90.00104 * 12 11 10 14 14 O 1.20825 * 120.00052 * 359.97438 * 13 12 11 15 15 O 1.34229 * 120.00273 * 180.02562 * 13 12 11 16 16 C 1.38228 * 120.82904 * 0.02999 * 11 10 9 17 17 C 1.40006 * 120.31415 * 359.94837 * 16 11 10 18 18 N 1.35829 * 133.42925 * 180.02562 * 17 16 11 19 19 C 1.30133 * 109.49134 * 180.02562 * 18 17 16 20 20 N 1.36016 * 109.97821 * 0.02562 * 19 18 17 21 21 H 0.97012 * 126.30443 * 179.97438 * 20 19 18 22 22 C 1.37353 * 107.39764 * 359.97438 * 20 19 18 23 23 H 0.97000 * 119.99770 * 359.97438 * 1 2 3 24 24 H 1.08008 * 119.92088 * 359.70456 * 10 9 7 25 25 H 1.08996 * 109.47590 * 210.00497 * 12 11 10 26 26 H 1.09001 * 109.47178 * 330.00436 * 12 11 10 27 27 H 0.96701 * 117.00167 * 180.02562 * 15 13 12 28 28 H 1.07997 * 119.84675 * 179.97438 * 16 11 10 29 29 H 1.08002 * 125.01182 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 2.4900 2.0465 -1.4000 5 1 1.4400 2.6526 0.7002 6 1 3.5400 1.4401 0.7000 7 6 2.0083 -1.2123 -0.0005 8 1 3.0510 -1.2337 -0.2811 9 6 1.3519 -2.4054 0.3650 10 6 0.2234 -2.3673 1.2043 11 6 -0.4159 -3.5364 1.5590 12 6 -1.6232 -3.4808 2.4592 13 6 -2.8687 -3.3465 1.6215 14 8 -2.7846 -3.3002 0.4170 15 8 -4.0715 -3.2773 2.2133 16 6 0.0374 -4.7590 1.1001 17 6 1.1576 -4.8285 0.2632 18 7 1.8178 -5.8568 -0.3299 19 6 2.8163 -5.3902 -1.0218 20 7 2.8614 -4.0349 -0.9169 21 1 3.5095 -3.4475 -1.3365 22 6 1.8203 -3.6508 -0.1074 23 1 -0.4850 0.8401 0.0004 24 1 -0.1405 -1.4204 1.5753 25 1 -1.6791 -4.3956 3.0491 26 1 -1.5398 -2.6229 3.1263 27 1 -4.8414 -3.1920 1.6344 28 1 -0.4752 -5.6649 1.3882 29 1 3.5073 -5.9907 -1.5948 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396089584.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:38 Heat of formation + Delta-G solvation = -35.637306 kcal Electronic energy + Delta-G solvation = -17192.290970 eV Core-core repulsion = 14273.399563 eV Total energy + Delta-G solvation = -2918.891407 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.79980 -39.59931 -36.47000 -35.42799 -33.92846 -31.76543 -30.98239 -28.48652 -26.68881 -25.27467 -22.04999 -21.49238 -20.32835 -19.56029 -17.50788 -17.40281 -16.68861 -15.85566 -15.62594 -15.10528 -14.97985 -14.05607 -13.96797 -13.18265 -12.94898 -12.65502 -12.34058 -11.76535 -11.65120 -11.27691 -11.24145 -10.90463 -10.67451 -10.37302 -10.19782 -9.99715 -9.84301 -9.58257 -9.03846 -8.89794 -7.15419 -6.93490 -6.81761 -4.37601 2.34035 2.81392 2.87266 2.94865 3.00136 3.04665 3.73954 3.83349 3.96400 4.08665 4.65560 5.21272 5.50447 5.57837 5.74219 5.95261 6.07232 6.25360 6.55233 6.75722 6.91050 6.97733 7.00616 7.04243 7.30550 7.63095 7.87922 8.03585 8.12907 8.40586 8.44840 8.50399 8.70048 8.71472 9.05235 10.08454 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.014894 B = 0.010869 C = 0.006664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.513711 B = 2575.443875 C = 4200.642465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.077 3.923 3 Si 0.907 3.093 4 H -0.270 1.270 5 H -0.274 1.274 6 H -0.261 1.261 7 C -0.463 4.463 8 H 0.073 0.927 9 C 0.130 3.870 10 C -0.171 4.171 11 C -0.050 4.050 12 C -0.057 4.057 13 C 0.472 3.528 14 O -0.490 6.490 15 O -0.531 6.531 16 C -0.188 4.188 17 C 0.069 3.931 18 N -0.517 5.517 19 C 0.213 3.787 20 N -0.589 5.589 21 H 0.412 0.588 22 C -0.014 4.014 23 H 0.282 0.718 24 H 0.123 0.877 25 H 0.100 0.900 26 H 0.104 0.896 27 H 0.400 0.600 28 H 0.094 0.906 29 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.269 -1.251 2.584 2.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C -0.143 4.143 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.199 1.199 6 H -0.185 1.185 7 C -0.492 4.492 8 H 0.091 0.909 9 C 0.125 3.875 10 C -0.193 4.193 11 C -0.052 4.052 12 C -0.094 4.094 13 C 0.313 3.687 14 O -0.375 6.375 15 O -0.343 6.343 16 C -0.210 4.210 17 C -0.049 4.049 18 N -0.240 5.240 19 C -0.073 4.073 20 N -0.199 5.199 21 H 0.249 0.751 22 C -0.122 4.122 23 H 0.093 0.907 24 H 0.141 0.859 25 H 0.118 0.882 26 H 0.122 0.878 27 H 0.258 0.742 28 H 0.112 0.888 29 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -0.380 -1.983 2.595 3.288 hybrid contribution 0.398 1.948 -0.943 2.201 sum 0.019 -0.035 1.652 1.652 Atomic orbital electron populations 1.69865 1.07448 1.29328 1.33502 1.25862 0.94736 1.01169 0.92499 0.86334 0.80635 0.80708 0.79220 1.19555 1.19898 1.18478 1.19318 0.97532 0.91408 1.40920 0.90935 1.16552 0.92394 0.88245 0.90271 1.20649 0.99832 0.96026 1.02788 1.18577 0.94300 0.93778 0.98526 1.20160 0.87556 1.04664 0.97043 1.23738 0.84314 0.72478 0.88206 1.90767 1.86751 1.43794 1.16202 1.84551 1.17556 1.86181 1.46014 1.19147 0.99435 0.95664 1.06752 1.18636 0.97714 0.87887 1.00649 1.70286 1.08023 1.31667 1.14007 1.24836 0.99184 0.81566 1.01729 1.42687 1.26854 1.07877 1.42510 0.75138 1.19293 0.94151 0.97082 1.01723 0.90684 0.85921 0.88177 0.87797 0.74215 0.88782 0.78664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.70 10.97 55.55 0.61 -19.10 15 2 C 0.08 1.86 5.14 -17.32 -0.09 1.77 15 3 Si 0.91 17.88 29.59 -169.99 -5.03 12.84 15 4 H -0.27 -5.29 7.11 56.52 0.40 -4.89 15 5 H -0.27 -5.30 7.11 56.52 0.40 -4.90 15 6 H -0.26 -5.08 7.11 56.52 0.40 -4.68 15 7 C -0.46 -11.67 9.04 -37.89 -0.34 -12.01 15 8 H 0.07 1.72 7.90 -52.48 -0.41 1.30 15 9 C 0.13 3.39 5.57 -106.80 -0.59 2.79 15 10 C -0.17 -4.34 8.31 -38.78 -0.32 -4.66 15 11 C -0.05 -1.15 4.36 -104.75 -0.46 -1.60 15 12 C -0.06 -1.02 5.92 -29.04 -0.17 -1.20 15 13 C 0.47 8.87 8.32 36.01 0.30 9.17 15 14 O -0.49 -11.49 16.79 -18.75 -0.31 -11.80 15 15 O -0.53 -7.65 13.42 -39.25 -0.53 -8.18 15 16 C -0.19 -4.52 9.73 -38.92 -0.38 -4.90 15 17 C 0.07 1.73 7.22 -84.73 -0.61 1.11 15 18 N -0.52 -11.87 11.29 -12.07 -0.14 -12.01 15 19 C 0.21 3.99 12.97 -89.78 -1.16 2.83 15 20 N -0.59 -11.83 6.20 -11.44 -0.07 -11.90 15 21 H 0.41 6.92 8.96 -40.81 -0.37 6.55 15 22 C -0.01 -0.35 7.03 -83.56 -0.59 -0.93 15 23 H 0.28 6.52 8.30 -40.82 -0.34 6.18 15 24 H 0.12 3.16 6.19 -52.48 -0.32 2.84 15 25 H 0.10 1.51 8.08 -51.93 -0.42 1.09 15 26 H 0.10 1.67 8.08 -51.93 -0.42 1.25 15 27 H 0.40 4.06 9.10 45.56 0.41 4.48 15 28 H 0.09 2.10 8.06 -52.49 -0.42 1.68 15 29 H 0.20 2.52 8.06 -52.49 -0.42 2.09 15 LS Contribution 265.92 15.07 4.01 4.01 Total: -1.00 -33.37 265.92 -7.39 -40.76 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -1.51 Total: 13.00 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: -4.42 Total: -7.63 kcal Atomic # 7 Polarization: -43.41 SS G_CDS: 0.40 Total: -43.01 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: -0.84 Total: -19.98 kcal Atomic # 14 Polarization: 17.88 SS G_CDS: -5.03 Total: 12.84 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -33.37 -7.39 -40.76 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396089584.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.127 kcal (2) G-P(sol) polarization free energy of solvation -33.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds