Wall clock time and date at job start Mon Mar 30 2020 03:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30840 * 1 3 3 Si 1.86797 * 120.00297 * 2 1 4 4 H 1.48498 * 109.47531 * 270.00403 * 3 2 1 5 5 H 1.48503 * 109.46815 * 30.00517 * 3 2 1 6 6 H 1.48499 * 109.47237 * 149.99954 * 3 2 1 7 7 C 1.39979 * 119.99828 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00175 * 162.54870 * 7 2 1 9 9 C 1.40992 * 119.99946 * 342.55369 * 7 2 1 10 10 C 1.40694 * 120.34330 * 334.98395 * 9 7 2 11 11 C 1.37891 * 120.15677 * 179.97438 * 10 9 7 12 12 C 1.50700 * 119.58915 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.47173 * 90.00104 * 12 11 10 14 14 O 1.20825 * 120.00052 * 359.97438 * 13 12 11 15 15 O 1.34229 * 120.00273 * 180.02562 * 13 12 11 16 16 C 1.38228 * 120.82904 * 0.02999 * 11 10 9 17 17 C 1.40006 * 120.31415 * 359.94837 * 16 11 10 18 18 N 1.35829 * 133.42925 * 180.02562 * 17 16 11 19 19 C 1.30133 * 109.49134 * 180.02562 * 18 17 16 20 20 N 1.36016 * 109.97821 * 0.02562 * 19 18 17 21 21 H 0.97012 * 126.30443 * 179.97438 * 20 19 18 22 22 C 1.37353 * 107.39764 * 359.97438 * 20 19 18 23 23 H 0.97000 * 119.99770 * 359.97438 * 1 2 3 24 24 H 1.08008 * 119.92088 * 359.70456 * 10 9 7 25 25 H 1.08996 * 109.47590 * 210.00497 * 12 11 10 26 26 H 1.09001 * 109.47178 * 330.00436 * 12 11 10 27 27 H 0.96701 * 117.00167 * 180.02562 * 15 13 12 28 28 H 1.07997 * 119.84675 * 179.97438 * 16 11 10 29 29 H 1.08002 * 125.01182 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 2.4900 2.0465 -1.4000 5 1 1.4400 2.6526 0.7002 6 1 3.5400 1.4401 0.7000 7 6 2.0083 -1.2123 -0.0005 8 1 3.0510 -1.2337 -0.2811 9 6 1.3519 -2.4054 0.3650 10 6 0.2234 -2.3673 1.2043 11 6 -0.4159 -3.5364 1.5590 12 6 -1.6232 -3.4808 2.4592 13 6 -2.8687 -3.3465 1.6215 14 8 -2.7846 -3.3002 0.4170 15 8 -4.0715 -3.2773 2.2133 16 6 0.0374 -4.7590 1.1001 17 6 1.1576 -4.8285 0.2632 18 7 1.8178 -5.8568 -0.3299 19 6 2.8163 -5.3902 -1.0218 20 7 2.8614 -4.0349 -0.9169 21 1 3.5095 -3.4475 -1.3365 22 6 1.8203 -3.6508 -0.1074 23 1 -0.4850 0.8401 0.0004 24 1 -0.1405 -1.4204 1.5753 25 1 -1.6791 -4.3956 3.0491 26 1 -1.5398 -2.6229 3.1263 27 1 -4.8414 -3.1920 1.6344 28 1 -0.4752 -5.6649 1.3882 29 1 3.5073 -5.9907 -1.5948 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396089584.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:38 Heat of formation + Delta-G solvation = -58.474874 kcal Electronic energy + Delta-G solvation = -17193.281281 eV Core-core repulsion = 14273.399563 eV Total energy + Delta-G solvation = -2919.881718 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.49040 -41.08668 -38.15370 -36.90347 -35.70995 -33.50039 -32.62730 -30.25781 -28.35982 -27.09768 -23.64500 -23.15929 -22.05479 -21.17641 -19.15674 -18.92933 -18.45087 -17.36329 -17.23305 -16.74599 -16.56718 -15.71364 -15.66717 -14.85484 -14.62397 -14.14907 -13.92333 -13.44899 -13.29413 -12.87958 -12.84752 -12.39502 -12.25724 -12.15835 -11.92210 -11.73531 -11.45109 -11.31252 -10.81588 -10.64857 -8.94342 -8.75734 -8.61095 -6.27384 0.61337 1.04875 1.37660 1.39613 1.42138 1.52961 2.15865 2.22427 2.40348 2.53720 2.87384 3.69279 3.70383 4.07824 4.31047 4.45790 4.66248 4.78348 4.83749 5.02639 5.12922 5.22011 5.23778 5.50783 5.73212 5.80748 6.06771 6.19531 6.30810 6.58469 6.79140 6.87761 6.96696 7.16173 7.34018 8.30996 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.014894 B = 0.010869 C = 0.006664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.513711 B = 2575.443875 C = 4200.642465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.037 3.963 3 Si 0.983 3.017 4 H -0.265 1.265 5 H -0.268 1.268 6 H -0.256 1.256 7 C -0.489 4.489 8 H 0.079 0.921 9 C 0.102 3.898 10 C -0.196 4.196 11 C -0.049 4.049 12 C -0.058 4.058 13 C 0.483 3.517 14 O -0.546 6.546 15 O -0.511 6.511 16 C -0.207 4.207 17 C 0.044 3.956 18 N -0.553 5.553 19 C 0.244 3.756 20 N -0.583 5.583 21 H 0.427 0.573 22 C -0.045 4.045 23 H 0.288 0.712 24 H 0.110 0.890 25 H 0.134 0.866 26 H 0.124 0.876 27 H 0.422 0.578 28 H 0.104 0.896 29 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.435 -1.221 2.703 2.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.180 4.180 3 Si 0.804 3.196 4 H -0.190 1.190 5 H -0.192 1.192 6 H -0.180 1.180 7 C -0.518 4.518 8 H 0.097 0.903 9 C 0.097 3.903 10 C -0.218 4.218 11 C -0.051 4.051 12 C -0.095 4.095 13 C 0.326 3.674 14 O -0.436 6.436 15 O -0.324 6.324 16 C -0.229 4.229 17 C -0.073 4.073 18 N -0.277 5.277 19 C -0.042 4.042 20 N -0.194 5.194 21 H 0.266 0.734 22 C -0.154 4.154 23 H 0.098 0.902 24 H 0.128 0.872 25 H 0.152 0.848 26 H 0.142 0.858 27 H 0.283 0.717 28 H 0.123 0.877 29 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges 0.303 -1.953 2.732 3.372 hybrid contribution 0.153 1.815 -0.997 2.076 sum 0.457 -0.139 1.735 1.799 Atomic orbital electron populations 1.69947 1.09085 1.30539 1.34296 1.26746 0.95394 1.04439 0.91385 0.85188 0.79160 0.75924 0.79343 1.18978 1.19207 1.17980 1.19599 0.97997 0.92114 1.42096 0.90264 1.16965 0.93125 0.89380 0.90789 1.20698 1.00762 0.96326 1.04011 1.18913 0.95309 0.92653 0.98221 1.20229 0.85512 1.07295 0.96454 1.23726 0.85482 0.70938 0.87248 1.90760 1.87654 1.46669 1.18468 1.84482 1.17119 1.85098 1.45740 1.19470 0.99794 0.96449 1.07213 1.19086 0.98320 0.88828 1.01098 1.70302 1.09824 1.31600 1.15943 1.26048 0.97888 0.81213 0.99094 1.42708 1.26167 1.08747 1.41810 0.73409 1.19397 0.95953 0.96716 1.03349 0.90154 0.87212 0.84769 0.85791 0.71675 0.87746 0.72515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -42.24 10.97 21.83 0.24 -42.00 15 2 C 0.04 1.78 5.14 85.26 0.44 2.22 15 3 Si 0.98 36.60 29.59 68.60 2.03 38.63 15 4 H -0.26 -9.56 7.11 99.48 0.71 -8.86 15 5 H -0.27 -9.57 7.11 99.48 0.71 -8.87 15 6 H -0.26 -9.24 7.11 99.48 0.71 -8.53 15 7 C -0.49 -25.16 9.04 23.37 0.21 -24.95 15 8 H 0.08 3.79 7.90 -2.91 -0.02 3.76 15 9 C 0.10 5.47 5.57 -21.28 -0.12 5.35 15 10 C -0.20 -10.28 8.31 22.79 0.19 -10.09 15 11 C -0.05 -2.29 4.36 -19.95 -0.09 -2.38 15 12 C -0.06 -2.04 5.92 29.10 0.17 -1.87 15 13 C 0.48 17.81 8.32 71.24 0.59 18.41 15 14 O -0.55 -25.99 16.79 21.97 0.37 -25.62 15 15 O -0.51 -13.65 13.42 -51.40 -0.69 -14.34 15 16 C -0.21 -10.13 9.73 22.70 0.22 -9.91 15 17 C 0.04 2.23 7.22 39.41 0.28 2.52 15 18 N -0.55 -24.88 11.29 -192.09 -2.17 -27.05 15 19 C 0.24 8.53 12.97 180.06 2.34 10.87 15 20 N -0.58 -22.78 6.20 -190.09 -1.18 -23.96 15 21 H 0.43 13.73 8.96 -92.70 -0.83 12.90 15 22 C -0.05 -2.27 7.03 39.46 0.28 -1.99 15 23 H 0.29 13.56 8.30 -92.71 -0.77 12.79 15 24 H 0.11 5.91 6.19 -2.91 -0.02 5.89 15 25 H 0.13 3.78 8.08 -2.39 -0.02 3.76 15 26 H 0.12 3.86 8.08 -2.39 -0.02 3.84 15 27 H 0.42 7.65 9.10 -74.06 -0.67 6.97 15 28 H 0.10 4.69 8.06 -2.91 -0.02 4.67 15 29 H 0.26 5.34 8.06 -2.91 -0.02 5.32 15 Total: -1.00 -75.35 265.92 2.84 -72.51 By element: Atomic # 1 Polarization: 33.92 SS G_CDS: -0.28 Total: 33.64 kcal Atomic # 6 Polarization: -16.33 SS G_CDS: 4.52 Total: -11.81 kcal Atomic # 7 Polarization: -89.89 SS G_CDS: -3.11 Total: -93.00 kcal Atomic # 8 Polarization: -39.64 SS G_CDS: -0.32 Total: -39.96 kcal Atomic # 14 Polarization: 36.60 SS G_CDS: 2.03 Total: 38.63 kcal Total: -75.35 2.84 -72.51 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396089584.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.030 kcal (2) G-P(sol) polarization free energy of solvation -75.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds