Wall clock time and date at job start Mon Mar 30 2020 04:01:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34725 * 117.00284 * 2 1 4 4 O 1.21484 * 120.00030 * 359.97438 * 3 2 1 5 5 C 1.47633 * 120.00063 * 180.02562 * 3 2 1 6 6 C 1.39639 * 119.76610 * 0.02562 * 5 3 2 7 7 C 1.39632 * 120.19828 * 180.02562 * 6 5 3 8 8 N 1.35949 * 133.27228 * 179.97438 * 7 6 5 9 9 C 1.30086 * 109.43242 * 179.97438 * 8 7 6 10 10 N 1.36066 * 110.01046 * 0.22952 * 9 8 7 11 11 H 0.97001 * 126.27165 * 179.74156 * 10 9 8 12 12 C 1.37153 * 107.46303 * 359.63038 * 10 9 8 13 13 C 1.41348 * 133.81139 * 180.09445 * 12 10 9 14 14 C 1.41076 * 120.25099 * 0.26240 * 13 12 10 15 15 H 1.07997 * 119.99586 * 24.67788 * 14 13 12 16 16 C 1.39956 * 120.00228 * 204.67143 * 14 13 12 17 17 N 1.30849 * 119.99802 * 17.91826 * 16 14 13 18 18 Si 1.86799 * 120.00096 * 197.90757 * 16 14 13 19 19 H 1.48501 * 109.47004 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46722 * 120.00576 * 18 16 14 21 21 H 1.48497 * 109.47037 * 240.00415 * 18 16 14 22 22 C 1.39409 * 119.76153 * 180.02562 * 5 3 2 23 23 H 1.08998 * 109.47528 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.47239 * 300.00437 * 1 2 3 25 25 H 1.09000 * 109.47128 * 60.00241 * 1 2 3 26 26 H 1.08003 * 119.89774 * 0.02562 * 6 5 3 27 27 H 1.07999 * 124.99519 * 179.97438 * 9 8 7 28 28 H 0.96995 * 120.00004 * 179.97438 * 17 16 14 29 29 H 1.07996 * 119.99703 * 359.97438 * 22 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0636 1.2004 0.0000 4 8 1.4021 2.2193 -0.0005 5 6 3.5380 1.2776 -0.0006 6 6 4.2937 0.1034 -0.0017 7 6 5.6886 0.1659 -0.0017 8 7 6.6638 -0.7813 -0.0021 9 6 7.8290 -0.2028 -0.0024 10 7 7.6774 1.1494 0.0029 11 1 8.3907 1.8068 0.0074 12 6 6.3314 1.4127 -0.0017 13 6 5.5669 2.6016 -0.0014 14 6 6.2075 3.8586 -0.0009 15 1 7.2100 3.9538 -0.3913 16 6 5.5440 4.9820 0.5053 17 7 4.5029 4.8315 1.2835 18 14 6.1448 6.6964 0.0703 19 1 7.3301 6.5949 -0.8185 20 1 5.0641 7.4369 -0.6291 21 1 6.5173 7.4203 1.3122 22 6 4.1657 2.5223 0.0000 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 3.7977 -0.8560 -0.0025 27 1 8.7772 -0.7197 -0.0024 28 1 4.0432 5.6101 1.6346 29 1 3.5738 3.4256 0.0004 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396099156.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:53 Heat of formation + Delta-G solvation = -26.095164 kcal Electronic energy + Delta-G solvation = -17108.928711 eV Core-core repulsion = 14190.451082 eV Total energy + Delta-G solvation = -2918.477629 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.97985 -39.55994 -36.29234 -35.47947 -33.79076 -31.93842 -29.77544 -28.27951 -27.19707 -25.40236 -23.01391 -21.73625 -20.49129 -19.79026 -17.74443 -17.30962 -16.23515 -16.12126 -15.67751 -15.33092 -14.98205 -14.15178 -13.75954 -13.23428 -12.90706 -12.76160 -12.71543 -11.97607 -11.74350 -11.54678 -11.34862 -10.82472 -10.52664 -10.37211 -10.33807 -10.23654 -9.78218 -9.67138 -9.16432 -9.06094 -7.45388 -7.14022 -6.93555 -4.48433 1.88244 2.36262 2.89379 2.98918 3.02383 3.41740 3.56656 3.77627 3.82947 3.93302 4.55514 5.09018 5.38596 5.44465 5.51777 5.58537 5.76029 5.97489 6.39372 6.52529 6.68526 6.75052 6.90908 6.98373 7.02097 7.43115 7.64630 7.78177 7.93436 8.23304 8.27642 8.49067 8.57861 8.62135 8.85724 9.99113 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.016155 B = 0.009976 C = 0.006287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.803238 B = 2805.925214 C = 4452.505299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.359 6.359 3 C 0.514 3.486 4 O -0.516 6.516 5 C -0.092 4.092 6 C -0.148 4.148 7 C 0.057 3.943 8 N -0.510 5.510 9 C 0.220 3.780 10 N -0.588 5.588 11 H 0.415 0.585 12 C 0.004 3.996 13 C 0.119 3.881 14 C -0.458 4.458 15 H 0.078 0.922 16 C 0.075 3.925 17 N -0.773 5.773 18 Si 0.911 3.089 19 H -0.261 1.261 20 H -0.268 1.268 21 H -0.273 1.273 22 C -0.131 4.131 23 H 0.094 0.906 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.113 0.887 27 H 0.200 0.800 28 H 0.287 0.713 29 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.210 -3.231 -1.519 3.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.276 6.276 3 C 0.360 3.640 4 O -0.406 6.406 5 C -0.095 4.095 6 C -0.170 4.170 7 C -0.060 4.060 8 N -0.232 5.232 9 C -0.067 4.067 10 N -0.199 5.199 11 H 0.252 0.748 12 C -0.106 4.106 13 C 0.114 3.886 14 C -0.487 4.487 15 H 0.096 0.904 16 C -0.146 4.146 17 N -0.396 5.396 18 Si 0.735 3.265 19 H -0.184 1.184 20 H -0.193 1.193 21 H -0.198 1.198 22 C -0.153 4.153 23 H 0.112 0.888 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.131 0.869 27 H 0.217 0.783 28 H 0.098 0.902 29 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 0.584 -3.709 -1.362 3.994 hybrid contribution 0.598 1.976 -0.030 2.065 sum 1.183 -1.733 -1.393 2.518 Atomic orbital electron populations 1.23118 0.77797 1.02781 1.02066 1.86621 1.22140 1.33889 1.84943 1.21703 0.89851 0.80561 0.71836 1.90762 1.66977 1.36048 1.46783 1.18558 0.86592 0.95045 1.09272 1.19633 0.89541 0.96510 1.11349 1.18601 0.93307 0.88158 1.05941 1.70362 0.97725 1.32464 1.22689 1.24931 0.98665 0.80450 1.02636 1.42692 1.07060 1.08005 1.62110 0.74821 1.19404 0.82959 0.96972 1.11256 1.16484 0.90587 0.89285 0.92217 1.19379 1.01632 0.91880 1.35765 0.90428 1.25906 0.94260 1.01804 0.92618 1.69802 1.15937 1.33379 1.20521 0.86207 0.79970 0.80982 0.79337 1.18423 1.19337 1.19830 1.21062 0.93154 0.95137 1.05975 0.88771 0.92375 0.92418 0.86883 0.78321 0.90211 0.84139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.53 10.56 101.05 1.07 1.59 15 2 O -0.36 -6.94 9.77 -40.56 -0.40 -7.34 15 3 C 0.51 11.71 7.89 34.57 0.27 11.99 15 4 O -0.52 -12.66 16.09 -19.25 -0.31 -12.97 15 5 C -0.09 -2.24 5.86 -105.10 -0.62 -2.85 15 6 C -0.15 -3.50 9.66 -38.54 -0.37 -3.88 15 7 C 0.06 1.36 7.20 -84.75 -0.61 0.75 15 8 N -0.51 -10.94 11.29 -12.09 -0.14 -11.08 15 9 C 0.22 3.78 12.97 -89.78 -1.16 2.62 15 10 N -0.59 -10.93 6.18 -11.40 -0.07 -11.00 15 11 H 0.41 6.35 8.96 -40.82 -0.37 5.98 15 12 C 0.00 0.09 7.02 -83.53 -0.59 -0.50 15 13 C 0.12 3.01 5.57 -106.85 -0.60 2.42 15 14 C -0.46 -11.18 9.04 -37.86 -0.34 -11.53 15 15 H 0.08 1.75 7.91 -52.49 -0.42 1.34 15 16 C 0.07 1.77 5.13 -17.33 -0.09 1.68 15 17 N -0.77 -19.45 10.97 55.55 0.61 -18.85 15 18 Si 0.91 17.66 29.60 -169.99 -5.03 12.63 15 19 H -0.26 -4.93 7.11 56.52 0.40 -4.53 15 20 H -0.27 -5.22 7.11 56.52 0.40 -4.82 15 21 H -0.27 -5.21 7.11 56.52 0.40 -4.81 15 22 C -0.13 -3.41 8.23 -38.35 -0.32 -3.73 15 23 H 0.09 1.00 8.14 -51.93 -0.42 0.58 15 24 H 0.06 0.82 8.14 -51.93 -0.42 0.40 15 25 H 0.06 0.80 8.14 -51.93 -0.42 0.38 15 26 H 0.11 2.50 7.57 -52.48 -0.40 2.10 15 27 H 0.20 2.26 8.06 -52.49 -0.42 1.84 15 28 H 0.29 6.59 8.30 -40.82 -0.34 6.25 15 29 H 0.14 3.90 5.70 -52.49 -0.30 3.60 15 LS Contribution 265.27 15.07 4.00 4.00 Total: -1.00 -30.77 265.27 -6.99 -37.76 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -2.30 Total: 8.29 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: -3.35 Total: -1.44 kcal Atomic # 7 Polarization: -41.33 SS G_CDS: 0.40 Total: -40.92 kcal Atomic # 8 Polarization: -19.60 SS G_CDS: -0.71 Total: -20.31 kcal Atomic # 14 Polarization: 17.66 SS G_CDS: -5.03 Total: 12.63 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -30.77 -6.99 -37.76 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396099156.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.661 kcal (2) G-P(sol) polarization free energy of solvation -30.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds