Wall clock time and date at job start Mon Mar 30 2020 04:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34852 * 117.00037 * 2 1 4 4 O 1.21575 * 120.00142 * 0.02562 * 3 2 1 5 5 C 1.47005 * 120.00161 * 179.97438 * 3 2 1 6 6 C 1.39665 * 120.09718 * 354.54244 * 5 3 2 7 7 C 1.37627 * 120.68302 * 180.24437 * 6 5 3 8 8 C 1.40282 * 120.56747 * 359.46907 * 7 6 5 9 9 N 1.35658 * 133.20458 * 180.22730 * 8 7 6 10 10 C 1.30217 * 109.52119 * 180.02562 * 9 8 7 11 11 N 1.35943 * 109.99431 * 359.97438 * 10 9 8 12 12 H 0.96998 * 126.30922 * 180.02562 * 11 10 9 13 13 C 1.37297 * 107.38154 * 0.02562 * 11 10 9 14 14 C 1.41140 * 133.90326 * 179.97438 * 13 11 10 15 15 C 1.40385 * 120.41902 * 0.06646 * 14 13 11 16 16 H 1.08000 * 120.00213 * 140.60516 * 15 14 13 17 17 C 1.40403 * 119.99954 * 320.59866 * 15 14 13 18 18 N 1.30584 * 119.99642 * 345.46309 * 17 15 14 19 19 Si 1.86792 * 120.00112 * 165.45690 * 17 15 14 20 20 H 1.48494 * 109.47159 * 90.00089 * 19 17 15 21 21 H 1.48498 * 109.47446 * 210.00291 * 19 17 15 22 22 H 1.48501 * 109.47240 * 330.00347 * 19 17 15 23 23 H 1.09002 * 109.47256 * 59.99580 * 1 2 3 24 24 H 1.08997 * 109.47172 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46987 * 299.99788 * 1 2 3 26 26 H 1.07997 * 119.65892 * 359.96770 * 6 5 3 27 27 H 1.08001 * 119.71612 * 179.73548 * 7 6 5 28 28 H 1.07999 * 125.00385 * 179.97438 * 10 9 8 29 29 H 0.97000 * 119.99461 * 176.70775 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0642 1.2015 0.0000 4 8 1.4021 2.2212 0.0005 5 6 3.5323 1.2785 0.0006 6 6 4.2946 0.1140 0.1160 7 6 5.6696 0.1725 0.1229 8 6 6.3319 1.4033 0.0029 9 7 7.6420 1.7542 -0.0248 10 6 7.7439 3.0460 -0.1538 11 7 6.5067 3.6057 -0.2176 12 1 6.3079 4.5502 -0.3139 13 6 5.5905 2.5878 -0.1206 14 6 4.1800 2.5370 -0.1235 15 6 3.4266 3.7151 -0.2475 16 1 2.5303 3.7220 -0.8500 17 6 3.8382 4.8843 0.4119 18 7 4.7400 4.8195 1.3541 19 14 3.0960 6.5326 -0.0588 20 1 1.8902 6.7871 0.7697 21 1 4.0925 7.6087 0.1737 22 1 2.7151 6.5123 -1.4940 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 3.8000 -0.8419 0.2053 27 1 6.2437 -0.7374 0.2173 28 1 8.6743 3.5922 -0.2028 29 1 5.0592 5.6322 1.7766 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396101077.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:48 Heat of formation + Delta-G solvation = -23.558069 kcal Electronic energy + Delta-G solvation = -17560.462025 eV Core-core repulsion = 14642.094413 eV Total energy + Delta-G solvation = -2918.367612 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.88299 -39.13269 -36.09784 -34.96390 -34.19958 -31.50089 -29.50246 -28.85982 -26.85379 -25.49466 -22.63068 -21.51709 -20.36443 -19.69675 -18.04736 -17.04222 -16.09638 -15.67836 -15.53204 -15.27525 -14.79236 -13.98527 -13.78654 -13.12811 -12.98121 -12.55499 -12.45324 -11.93101 -11.62201 -11.53696 -11.31418 -11.07142 -10.77008 -10.46462 -10.20578 -9.91128 -9.53159 -9.35605 -9.15352 -8.76314 -7.29401 -7.24090 -6.95001 -4.70159 1.96208 2.66299 2.86270 2.91523 2.96390 3.56697 3.68935 3.72205 4.08461 4.21665 4.44851 5.25443 5.33777 5.62269 5.69703 5.84220 5.87126 6.21037 6.35316 6.57796 6.68619 6.80867 6.85190 6.94474 7.32131 7.50247 7.64520 7.78341 7.95893 8.24300 8.30472 8.45448 8.50632 8.96572 9.10709 9.76134 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.016313 B = 0.012757 C = 0.007391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.988394 B = 2194.362233 C = 3787.548934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.373 6.373 3 C 0.508 3.492 4 O -0.522 6.522 5 C -0.263 4.263 6 C -0.033 4.033 7 C -0.195 4.195 8 C 0.074 3.926 9 N -0.516 5.516 10 C 0.206 3.794 11 N -0.549 5.549 12 H 0.415 0.585 13 C 0.033 3.967 14 C 0.184 3.816 15 C -0.411 4.411 16 H 0.109 0.891 17 C 0.064 3.936 18 N -0.788 5.788 19 Si 0.915 3.085 20 H -0.263 1.263 21 H -0.274 1.274 22 H -0.257 1.257 23 H 0.053 0.947 24 H 0.087 0.913 25 H 0.053 0.947 26 H 0.111 0.889 27 H 0.104 0.896 28 H 0.197 0.803 29 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.767 -0.206 -2.211 2.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.291 6.291 3 C 0.359 3.641 4 O -0.413 6.413 5 C -0.268 4.268 6 C -0.054 4.054 7 C -0.216 4.216 8 C -0.048 4.048 9 N -0.238 5.238 10 C -0.080 4.080 11 N -0.155 5.155 12 H 0.254 0.746 13 C -0.080 4.080 14 C 0.179 3.821 15 C -0.439 4.439 16 H 0.127 0.873 17 C -0.155 4.155 18 N -0.414 5.414 19 Si 0.738 3.262 20 H -0.187 1.187 21 H -0.199 1.199 22 H -0.180 1.180 23 H 0.071 0.929 24 H 0.106 0.894 25 H 0.071 0.929 26 H 0.130 0.870 27 H 0.122 0.878 28 H 0.213 0.787 29 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.228 -0.349 -1.945 1.989 hybrid contribution -1.141 1.944 0.004 2.254 sum -1.369 1.594 -1.941 2.861 Atomic orbital electron populations 1.22962 0.78704 1.01998 1.01666 1.86588 1.21384 1.34930 1.86210 1.21034 0.89334 0.80195 0.73530 1.90746 1.66879 1.35251 1.48411 1.18148 0.87238 0.93855 1.27573 1.20558 0.92688 0.96423 0.95714 1.19414 0.92784 0.94000 1.15366 1.18984 0.88418 0.93686 1.03720 1.70280 1.19390 1.11124 1.23002 1.24863 0.89050 0.90496 1.03573 1.42864 1.05701 1.09709 1.57227 0.74611 1.18944 0.91674 0.87295 1.10044 1.16337 0.87342 0.92111 0.86319 1.20063 1.09011 0.92200 1.22619 0.87338 1.26235 0.94167 1.01840 0.93222 1.69756 1.23972 1.31686 1.15967 0.86157 0.80022 0.79154 0.80833 1.18749 1.19895 1.18022 0.92872 0.89440 0.92852 0.87050 0.87768 0.78683 0.90081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.64 10.57 101.05 1.07 1.71 15 2 O -0.37 -7.57 9.80 -40.91 -0.40 -7.97 15 3 C 0.51 12.17 7.83 34.28 0.27 12.44 15 4 O -0.52 -13.46 13.47 -19.32 -0.26 -13.72 15 5 C -0.26 -6.55 5.93 -104.34 -0.62 -7.17 15 6 C -0.03 -0.75 9.56 -39.27 -0.38 -1.12 15 7 C -0.19 -4.46 10.07 -39.04 -0.39 -4.85 15 8 C 0.07 1.81 7.22 -84.64 -0.61 1.20 15 9 N -0.52 -11.63 11.28 -12.00 -0.14 -11.76 15 10 C 0.21 3.94 12.97 -89.78 -1.16 2.78 15 11 N -0.55 -11.57 5.22 -11.42 -0.06 -11.63 15 12 H 0.41 8.08 7.22 -40.82 -0.29 7.78 15 13 C 0.03 0.81 6.12 -83.55 -0.51 0.30 15 14 C 0.18 4.78 5.39 -106.51 -0.57 4.20 15 15 C -0.41 -10.53 7.41 -37.96 -0.28 -10.81 15 16 H 0.11 2.88 6.25 -52.49 -0.33 2.55 15 17 C 0.06 1.49 4.58 -17.27 -0.08 1.41 15 18 N -0.79 -18.54 10.66 55.57 0.59 -17.94 15 19 Si 0.92 17.66 29.59 -169.99 -5.03 12.63 15 20 H -0.26 -5.25 7.11 56.52 0.40 -4.85 15 21 H -0.27 -4.94 7.11 56.52 0.40 -4.53 15 22 H -0.26 -4.95 7.11 56.52 0.40 -4.55 15 23 H 0.05 0.81 8.14 -51.93 -0.42 0.39 15 24 H 0.09 1.02 8.14 -51.93 -0.42 0.60 15 25 H 0.05 0.83 8.14 -51.93 -0.42 0.41 15 26 H 0.11 2.21 7.58 -52.49 -0.40 1.81 15 27 H 0.10 2.15 8.06 -52.49 -0.42 1.73 15 28 H 0.20 2.65 8.06 -52.49 -0.42 2.23 15 29 H 0.29 6.09 8.29 -40.82 -0.34 5.75 15 LS Contribution 258.87 15.07 3.90 3.90 Total: -1.00 -30.14 258.87 -6.93 -37.08 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -2.27 Total: 9.31 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: -3.27 Total: 0.09 kcal Atomic # 7 Polarization: -41.73 SS G_CDS: 0.40 Total: -41.33 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: -0.66 Total: -21.69 kcal Atomic # 14 Polarization: 17.66 SS G_CDS: -5.03 Total: 12.63 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -30.14 -6.93 -37.08 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396101077.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.519 kcal (2) G-P(sol) polarization free energy of solvation -30.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds