Wall clock time and date at job start Mon Mar 30 2020 04:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34852 * 117.00037 * 2 1 4 4 O 1.21575 * 120.00142 * 0.02562 * 3 2 1 5 5 C 1.47005 * 120.00161 * 179.97438 * 3 2 1 6 6 C 1.39665 * 120.09718 * 354.54244 * 5 3 2 7 7 C 1.37627 * 120.68302 * 180.24437 * 6 5 3 8 8 C 1.40282 * 120.56747 * 359.46907 * 7 6 5 9 9 N 1.35658 * 133.20458 * 180.22730 * 8 7 6 10 10 C 1.30217 * 109.52119 * 180.02562 * 9 8 7 11 11 N 1.35943 * 109.99431 * 359.97438 * 10 9 8 12 12 H 0.96998 * 126.30922 * 180.02562 * 11 10 9 13 13 C 1.37297 * 107.38154 * 0.02562 * 11 10 9 14 14 C 1.41140 * 133.90326 * 179.97438 * 13 11 10 15 15 C 1.40385 * 120.41902 * 0.06646 * 14 13 11 16 16 H 1.08000 * 120.00213 * 140.60516 * 15 14 13 17 17 C 1.40403 * 119.99954 * 320.59866 * 15 14 13 18 18 N 1.30584 * 119.99642 * 345.46309 * 17 15 14 19 19 Si 1.86792 * 120.00112 * 165.45690 * 17 15 14 20 20 H 1.48494 * 109.47159 * 90.00089 * 19 17 15 21 21 H 1.48498 * 109.47446 * 210.00291 * 19 17 15 22 22 H 1.48501 * 109.47240 * 330.00347 * 19 17 15 23 23 H 1.09002 * 109.47256 * 59.99580 * 1 2 3 24 24 H 1.08997 * 109.47172 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46987 * 299.99788 * 1 2 3 26 26 H 1.07997 * 119.65892 * 359.96770 * 6 5 3 27 27 H 1.08001 * 119.71612 * 179.73548 * 7 6 5 28 28 H 1.07999 * 125.00385 * 179.97438 * 10 9 8 29 29 H 0.97000 * 119.99461 * 176.70775 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0642 1.2015 0.0000 4 8 1.4021 2.2212 0.0005 5 6 3.5323 1.2785 0.0006 6 6 4.2946 0.1140 0.1160 7 6 5.6696 0.1725 0.1229 8 6 6.3319 1.4033 0.0029 9 7 7.6420 1.7542 -0.0248 10 6 7.7439 3.0460 -0.1538 11 7 6.5067 3.6057 -0.2176 12 1 6.3079 4.5502 -0.3139 13 6 5.5905 2.5878 -0.1206 14 6 4.1800 2.5370 -0.1235 15 6 3.4266 3.7151 -0.2475 16 1 2.5303 3.7220 -0.8500 17 6 3.8382 4.8843 0.4119 18 7 4.7400 4.8195 1.3541 19 14 3.0960 6.5326 -0.0588 20 1 1.8902 6.7871 0.7697 21 1 4.0925 7.6087 0.1737 22 1 2.7151 6.5123 -1.4940 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 3.8000 -0.8419 0.2053 27 1 6.2437 -0.7374 0.2173 28 1 8.6743 3.5922 -0.2028 29 1 5.0592 5.6322 1.7766 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396101077.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:48 Heat of formation + Delta-G solvation = -41.486021 kcal Electronic energy + Delta-G solvation = -17561.239439 eV Core-core repulsion = 14642.094413 eV Total energy + Delta-G solvation = -2919.145026 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.57820 -40.87666 -37.80890 -36.75094 -35.96342 -33.22516 -31.27991 -30.56088 -28.32003 -27.24288 -24.33358 -23.26796 -22.03314 -21.44555 -19.81147 -18.77026 -17.80131 -17.41627 -17.20774 -16.90768 -16.44417 -15.68464 -15.40725 -14.80825 -14.61984 -14.13966 -14.07105 -13.63898 -13.24011 -13.17596 -12.89093 -12.79763 -12.33867 -12.15388 -11.89250 -11.52273 -11.27972 -11.10974 -10.91766 -10.55196 -9.05199 -9.01379 -8.72444 -6.55802 0.18419 0.90459 1.31756 1.34065 1.45214 1.84530 2.10391 2.13206 2.31620 2.62343 2.68342 3.50883 3.73585 4.26105 4.41371 4.42486 4.46038 4.66395 4.74173 4.86297 4.95070 5.07922 5.12608 5.21258 5.59483 5.74044 5.83113 6.01005 6.17916 6.39530 6.49853 6.64201 6.88788 7.26868 7.31623 8.05186 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.016313 B = 0.012757 C = 0.007391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.988394 B = 2194.362233 C = 3787.548934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.372 6.372 3 C 0.507 3.493 4 O -0.550 6.550 5 C -0.293 4.293 6 C -0.031 4.031 7 C -0.203 4.203 8 C 0.054 3.946 9 N -0.542 5.542 10 C 0.232 3.768 11 N -0.548 5.548 12 H 0.421 0.579 13 C 0.005 3.995 14 C 0.158 3.842 15 C -0.441 4.441 16 H 0.087 0.913 17 C 0.037 3.963 18 N -0.807 5.807 19 Si 0.979 3.021 20 H -0.274 1.274 21 H -0.245 1.245 22 H -0.261 1.261 23 H 0.053 0.947 24 H 0.134 0.866 25 H 0.051 0.949 26 H 0.136 0.864 27 H 0.124 0.876 28 H 0.255 0.745 29 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.027 0.340 -2.188 2.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.290 6.290 3 C 0.359 3.641 4 O -0.444 6.444 5 C -0.298 4.298 6 C -0.052 4.052 7 C -0.224 4.224 8 C -0.068 4.068 9 N -0.264 5.264 10 C -0.054 4.054 11 N -0.155 5.155 12 H 0.261 0.739 13 C -0.108 4.108 14 C 0.153 3.847 15 C -0.468 4.468 16 H 0.105 0.895 17 C -0.180 4.180 18 N -0.433 5.433 19 Si 0.799 3.201 20 H -0.199 1.199 21 H -0.168 1.168 22 H -0.185 1.185 23 H 0.072 0.928 24 H 0.152 0.848 25 H 0.070 0.930 26 H 0.154 0.846 27 H 0.142 0.858 28 H 0.270 0.730 29 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.574 0.167 -1.918 2.009 hybrid contribution -1.368 1.694 0.021 2.177 sum -0.794 1.861 -1.897 2.773 Atomic orbital electron populations 1.23375 0.75907 1.05053 1.01672 1.86544 1.24075 1.32837 1.85548 1.21026 0.89310 0.80755 0.72986 1.90714 1.67463 1.36409 1.49831 1.18560 0.88265 0.94646 1.28330 1.20761 0.92672 0.96749 0.94981 1.19737 0.93127 0.94568 1.14937 1.19389 0.89432 0.94183 1.03814 1.70312 1.18360 1.12884 1.24872 1.26019 0.90083 0.89866 0.99383 1.42897 1.05762 1.09627 1.57215 0.73874 1.19030 0.91690 0.88545 1.11538 1.16708 0.88454 0.92748 0.86768 1.20035 1.08993 0.93706 1.24100 0.89480 1.26859 0.94385 1.04194 0.92527 1.69752 1.24394 1.33217 1.15933 0.85240 0.79310 0.75694 0.79821 1.19910 1.16807 1.18453 0.92769 0.84820 0.93046 0.84632 0.85821 0.72967 0.88839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.00 10.57 113.37 1.20 2.20 15 2 O -0.37 -14.99 9.80 -57.65 -0.56 -15.55 15 3 C 0.51 24.86 7.83 70.12 0.55 25.41 15 4 O -0.55 -29.37 13.47 19.59 0.26 -29.10 15 5 C -0.29 -14.96 5.93 -19.68 -0.12 -15.07 15 6 C -0.03 -1.41 9.56 22.47 0.21 -1.20 15 7 C -0.20 -9.25 10.07 22.62 0.23 -9.02 15 8 C 0.05 2.62 7.22 39.55 0.29 2.90 15 9 N -0.54 -23.58 11.28 -191.87 -2.16 -25.75 15 10 C 0.23 8.29 12.97 180.06 2.34 10.63 15 11 N -0.55 -22.49 5.22 -190.06 -0.99 -23.48 15 12 H 0.42 15.87 7.22 -92.71 -0.67 15.20 15 13 C 0.00 0.23 6.12 39.50 0.24 0.47 15 14 C 0.16 8.44 5.39 -21.09 -0.11 8.33 15 15 C -0.44 -23.27 7.41 23.32 0.17 -23.10 15 16 H 0.09 4.85 6.25 -2.91 -0.02 4.84 15 17 C 0.04 1.74 4.58 85.41 0.39 2.13 15 18 N -0.81 -37.59 10.66 21.91 0.23 -37.36 15 19 Si 0.98 35.92 29.59 68.60 2.03 37.95 15 20 H -0.27 -10.48 7.11 99.48 0.71 -9.77 15 21 H -0.24 -7.78 7.11 99.48 0.71 -7.07 15 22 H -0.26 -9.63 7.11 99.48 0.71 -8.93 15 23 H 0.05 1.61 8.14 -2.39 -0.02 1.59 15 24 H 0.13 2.74 8.14 -2.39 -0.02 2.72 15 25 H 0.05 1.56 8.14 -2.39 -0.02 1.54 15 26 H 0.14 5.28 7.58 -2.91 -0.02 5.26 15 27 H 0.12 5.00 8.06 -2.91 -0.02 4.97 15 28 H 0.25 5.65 8.06 -2.91 -0.02 5.62 15 29 H 0.30 12.28 8.29 -92.71 -0.77 11.51 15 Total: -1.00 -66.86 258.87 4.73 -62.13 By element: Atomic # 1 Polarization: 26.95 SS G_CDS: 0.54 Total: 27.49 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: 5.39 Total: 3.68 kcal Atomic # 7 Polarization: -83.67 SS G_CDS: -2.92 Total: -86.59 kcal Atomic # 8 Polarization: -44.35 SS G_CDS: -0.30 Total: -44.65 kcal Atomic # 14 Polarization: 35.92 SS G_CDS: 2.03 Total: 37.95 kcal Total: -66.86 4.73 -62.13 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396101077.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.644 kcal (2) G-P(sol) polarization free energy of solvation -66.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds