Wall clock time and date at job start Mon Mar 30 2020 03:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30882 * 1 3 3 Si 1.86792 * 120.00404 * 2 1 4 4 H 1.48496 * 109.47396 * 240.00536 * 3 2 1 5 5 H 1.48505 * 109.46891 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47142 * 119.99939 * 3 2 1 7 7 C 1.39884 * 119.99725 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00118 * 163.15804 * 7 2 1 9 9 C 1.41323 * 119.99950 * 343.15736 * 7 2 1 10 10 C 1.40346 * 120.01392 * 334.42151 * 9 7 2 11 11 C 1.39109 * 119.42437 * 179.97438 * 10 9 7 12 12 N 1.35941 * 133.46148 * 179.97438 * 11 10 9 13 13 C 1.30052 * 109.54866 * 180.02562 * 12 11 10 14 14 N 1.36117 * 110.18099 * 359.97438 * 13 12 11 15 15 H 0.97000 * 126.29233 * 179.97438 * 14 13 12 16 16 C 1.37764 * 107.42925 * 359.73139 * 14 13 12 17 17 C 1.39372 * 133.74685 * 179.48402 * 16 14 13 18 18 C 1.50696 * 119.85246 * 0.76335 * 17 16 14 19 19 C 1.50708 * 109.47081 * 84.72932 * 18 17 16 20 20 O 1.20826 * 119.99683 * 359.97438 * 19 18 17 21 21 O 1.34223 * 119.99756 * 179.71906 * 19 18 17 22 22 C 1.36135 * 120.28494 * 180.48818 * 17 16 14 23 23 H 0.96993 * 119.99545 * 359.97438 * 1 2 3 24 24 H 1.08003 * 120.28930 * 359.95502 * 10 9 7 25 25 H 1.07998 * 124.90866 * 180.02562 * 13 12 11 26 26 H 1.08998 * 109.47742 * 324.72629 * 18 17 16 27 27 H 1.09007 * 109.46966 * 204.72752 * 18 17 16 28 28 H 0.96702 * 116.99778 * 180.27513 * 21 19 18 29 29 H 1.08003 * 119.81348 * 180.26920 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6176 0.0000 4 1 3.0966 1.6963 -1.2125 5 1 1.2779 2.7464 0.0006 6 1 3.0967 1.6962 1.2125 7 6 2.0082 -1.2115 -0.0005 8 1 3.0534 -1.2315 -0.2715 9 6 1.3470 -2.4092 0.3535 10 6 0.2213 -2.3686 1.1907 11 6 -0.4205 -3.5550 1.5310 12 7 -1.5035 -3.8451 2.2997 13 6 -1.7035 -5.1301 2.3025 14 7 -0.7657 -5.7530 1.5374 15 1 -0.6960 -6.7073 1.3783 16 6 0.0631 -4.7787 1.0260 17 6 1.1852 -4.8042 0.1996 18 6 1.6975 -6.1191 -0.3291 19 6 0.9392 -6.4880 -1.5782 20 8 0.0715 -5.7582 -1.9958 21 8 1.2313 -7.6246 -2.2296 22 6 1.8169 -3.6461 -0.1363 23 1 -0.4849 0.8400 0.0004 24 1 -0.1434 -1.4245 1.5677 25 1 -2.4992 -5.6306 2.8342 26 1 1.5555 -6.8939 0.4242 27 1 2.7586 -6.0285 -0.5617 28 1 0.7208 -7.8166 -3.0281 29 1 2.6832 -3.6744 -0.7807 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396115558.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:37 Heat of formation + Delta-G solvation = -31.505493 kcal Electronic energy + Delta-G solvation = -17170.394824 eV Core-core repulsion = 14251.682586 eV Total energy + Delta-G solvation = -2918.712238 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.89872 -39.83229 -36.53963 -35.77921 -33.80149 -32.26762 -30.51811 -28.68909 -26.99376 -25.03094 -22.25609 -21.44598 -20.60154 -19.60800 -17.82961 -17.29521 -16.78371 -16.11065 -15.71574 -15.49710 -14.86494 -14.03524 -13.99218 -13.27975 -12.94976 -12.66883 -12.43604 -12.03276 -11.76741 -11.29692 -11.18412 -11.02185 -10.72233 -10.40607 -10.21670 -9.95714 -9.89506 -9.53311 -9.07115 -8.82436 -7.19369 -6.87992 -6.61883 -4.22816 2.19501 2.50804 2.80719 3.12824 3.15137 3.18378 3.43644 3.88021 3.99066 4.02859 4.72167 5.16008 5.24914 5.37625 5.55635 5.76387 5.80552 5.92882 6.45118 6.68502 6.74441 6.78059 6.97249 7.25689 7.40125 7.56410 7.86408 8.04010 8.10935 8.16750 8.36845 8.53442 8.92580 8.95839 9.06003 10.33444 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.023335 B = 0.007738 C = 0.006250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.649403 B = 3617.513321 C = 4478.896454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.075 3.925 3 Si 0.907 3.093 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.465 4.465 8 H 0.077 0.923 9 C 0.095 3.905 10 C -0.128 4.128 11 C 0.070 3.930 12 N -0.508 5.508 13 C 0.225 3.775 14 N -0.612 5.612 15 H 0.403 0.597 16 C -0.021 4.021 17 C -0.077 4.077 18 C -0.059 4.059 19 C 0.466 3.534 20 O -0.491 6.491 21 O -0.528 6.528 22 C -0.138 4.138 23 H 0.280 0.720 24 H 0.127 0.873 25 H 0.196 0.804 26 H 0.094 0.906 27 H 0.109 0.891 28 H 0.403 0.597 29 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.076 -11.290 -0.174 11.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.142 4.142 3 Si 0.732 3.268 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.496 4.496 8 H 0.096 0.904 9 C 0.090 3.910 10 C -0.150 4.150 11 C -0.044 4.044 12 N -0.230 5.230 13 C -0.062 4.062 14 N -0.226 5.226 15 H 0.238 0.762 16 C -0.126 4.126 17 C -0.081 4.081 18 C -0.097 4.097 19 C 0.307 3.693 20 O -0.376 6.376 21 O -0.341 6.341 22 C -0.158 4.158 23 H 0.091 0.909 24 H 0.145 0.855 25 H 0.212 0.788 26 H 0.112 0.888 27 H 0.127 0.873 28 H 0.261 0.739 29 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 1.390 -10.098 0.471 10.204 hybrid contribution 0.301 -0.542 -1.154 1.310 sum 1.691 -10.639 -0.682 10.795 Atomic orbital electron populations 1.69844 1.07427 1.29168 1.35419 1.25838 0.94692 1.01090 0.92627 0.86396 0.80071 0.80603 0.79754 1.19203 1.20464 1.18915 1.19336 0.97569 0.90907 1.41751 0.90443 1.17256 0.91927 0.91716 0.90061 1.20484 0.98861 0.94557 1.01123 1.19009 0.93847 0.93351 0.98239 1.70373 1.17698 1.12251 1.22645 1.24846 0.94873 0.89592 0.96907 1.42684 1.27395 1.08266 1.44249 0.76165 1.18300 0.98046 0.89222 1.07075 1.17384 0.96348 0.92670 1.01669 1.20185 1.00463 0.97559 0.91514 1.23884 0.82108 0.77689 0.85600 1.90792 1.30677 1.50163 1.65977 1.84556 1.64189 1.42633 1.42698 1.20644 1.01475 0.91800 1.01873 0.90866 0.85527 0.78762 0.88778 0.87309 0.73930 0.87741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.53 10.96 55.54 0.61 -20.92 15 2 C 0.08 1.93 5.14 -17.34 -0.09 1.84 15 3 Si 0.91 19.08 29.59 -169.99 -5.03 14.05 15 4 H -0.27 -5.51 7.11 56.52 0.40 -5.11 15 5 H -0.28 -5.79 7.11 56.52 0.40 -5.39 15 6 H -0.26 -5.49 7.11 56.52 0.40 -5.09 15 7 C -0.47 -12.33 9.04 -37.79 -0.34 -12.67 15 8 H 0.08 1.92 7.90 -52.49 -0.41 1.51 15 9 C 0.09 2.53 5.57 -106.85 -0.59 1.93 15 10 C -0.13 -3.54 8.73 -38.47 -0.34 -3.88 15 11 C 0.07 1.81 7.21 -84.70 -0.61 1.20 15 12 N -0.51 -11.96 11.28 -12.05 -0.14 -12.10 15 13 C 0.22 4.06 12.96 -89.76 -1.16 2.90 15 14 N -0.61 -10.81 6.21 -11.59 -0.07 -10.88 15 15 H 0.40 5.41 8.96 -40.82 -0.37 5.05 15 16 C -0.02 -0.46 6.99 -83.76 -0.59 -1.05 15 17 C -0.08 -1.63 4.34 -104.96 -0.46 -2.09 15 18 C -0.06 -0.92 5.93 -29.03 -0.17 -1.09 15 19 C 0.47 7.51 8.32 36.01 0.30 7.81 15 20 O -0.49 -10.26 16.79 -18.75 -0.31 -10.58 15 21 O -0.53 -6.32 13.42 -39.24 -0.53 -6.84 15 22 C -0.14 -3.23 9.31 -39.26 -0.37 -3.60 15 23 H 0.28 7.00 8.30 -40.82 -0.34 6.66 15 24 H 0.13 3.71 6.19 -52.48 -0.32 3.39 15 25 H 0.20 2.40 8.06 -52.49 -0.42 1.98 15 26 H 0.09 1.20 8.12 -51.93 -0.42 0.78 15 27 H 0.11 1.44 8.03 -51.92 -0.42 1.02 15 28 H 0.40 3.18 9.10 45.56 0.41 3.59 15 29 H 0.10 2.21 8.04 -52.48 -0.42 1.78 15 LS Contribution 265.83 15.07 4.01 4.01 Total: -1.00 -34.38 265.83 -7.39 -41.76 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -1.51 Total: 10.18 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: -4.41 Total: -8.68 kcal Atomic # 7 Polarization: -44.30 SS G_CDS: 0.40 Total: -43.90 kcal Atomic # 8 Polarization: -16.58 SS G_CDS: -0.84 Total: -17.42 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.03 Total: 14.05 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -34.38 -7.39 -41.76 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396115558.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.259 kcal (2) G-P(sol) polarization free energy of solvation -34.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds