Wall clock time and date at job start Mon Mar 30 2020 03:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30882 * 1 3 3 Si 1.86792 * 120.00404 * 2 1 4 4 H 1.48496 * 109.47396 * 240.00536 * 3 2 1 5 5 H 1.48505 * 109.46891 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47142 * 119.99939 * 3 2 1 7 7 C 1.39884 * 119.99725 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00118 * 163.15804 * 7 2 1 9 9 C 1.41323 * 119.99950 * 343.15736 * 7 2 1 10 10 C 1.40346 * 120.01392 * 334.42151 * 9 7 2 11 11 C 1.39109 * 119.42437 * 179.97438 * 10 9 7 12 12 N 1.35941 * 133.46148 * 179.97438 * 11 10 9 13 13 C 1.30052 * 109.54866 * 180.02562 * 12 11 10 14 14 N 1.36117 * 110.18099 * 359.97438 * 13 12 11 15 15 H 0.97000 * 126.29233 * 179.97438 * 14 13 12 16 16 C 1.37764 * 107.42925 * 359.73139 * 14 13 12 17 17 C 1.39372 * 133.74685 * 179.48402 * 16 14 13 18 18 C 1.50696 * 119.85246 * 0.76335 * 17 16 14 19 19 C 1.50708 * 109.47081 * 84.72932 * 18 17 16 20 20 O 1.20826 * 119.99683 * 359.97438 * 19 18 17 21 21 O 1.34223 * 119.99756 * 179.71906 * 19 18 17 22 22 C 1.36135 * 120.28494 * 180.48818 * 17 16 14 23 23 H 0.96993 * 119.99545 * 359.97438 * 1 2 3 24 24 H 1.08003 * 120.28930 * 359.95502 * 10 9 7 25 25 H 1.07998 * 124.90866 * 180.02562 * 13 12 11 26 26 H 1.08998 * 109.47742 * 324.72629 * 18 17 16 27 27 H 1.09007 * 109.46966 * 204.72752 * 18 17 16 28 28 H 0.96702 * 116.99778 * 180.27513 * 21 19 18 29 29 H 1.08003 * 119.81348 * 180.26920 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6176 0.0000 4 1 3.0966 1.6963 -1.2125 5 1 1.2779 2.7464 0.0006 6 1 3.0967 1.6962 1.2125 7 6 2.0082 -1.2115 -0.0005 8 1 3.0534 -1.2315 -0.2715 9 6 1.3470 -2.4092 0.3535 10 6 0.2213 -2.3686 1.1907 11 6 -0.4205 -3.5550 1.5310 12 7 -1.5035 -3.8451 2.2997 13 6 -1.7035 -5.1301 2.3025 14 7 -0.7657 -5.7530 1.5374 15 1 -0.6960 -6.7073 1.3783 16 6 0.0631 -4.7787 1.0260 17 6 1.1852 -4.8042 0.1996 18 6 1.6975 -6.1191 -0.3291 19 6 0.9392 -6.4880 -1.5782 20 8 0.0715 -5.7582 -1.9958 21 8 1.2313 -7.6246 -2.2296 22 6 1.8169 -3.6461 -0.1363 23 1 -0.4849 0.8400 0.0004 24 1 -0.1434 -1.4245 1.5677 25 1 -2.4992 -5.6306 2.8342 26 1 1.5555 -6.8939 0.4242 27 1 2.7586 -6.0285 -0.5617 28 1 0.7208 -7.8166 -3.0281 29 1 2.6832 -3.6744 -0.7807 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396115558.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:37 Heat of formation + Delta-G solvation = -56.338683 kcal Electronic energy + Delta-G solvation = -17171.471672 eV Core-core repulsion = 14251.682586 eV Total energy + Delta-G solvation = -2919.789086 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.53989 -41.11112 -38.21796 -37.04043 -35.55998 -33.99575 -32.13247 -30.46883 -28.61064 -26.88996 -23.76313 -22.95740 -22.33615 -21.18313 -19.11787 -19.01276 -18.43422 -17.41951 -17.35141 -16.83993 -16.62498 -15.70728 -15.62712 -14.91703 -14.34412 -14.27462 -13.92958 -13.64388 -13.35042 -12.90954 -12.72602 -12.48164 -12.42047 -12.17264 -11.83130 -11.69372 -11.58219 -11.19508 -10.91334 -10.57406 -9.02055 -8.67334 -8.51735 -6.22009 0.50593 1.03325 1.27461 1.40081 1.51876 1.54750 2.05905 2.25950 2.41806 2.48654 2.84371 3.71110 3.76837 3.85304 4.20712 4.36623 4.53437 4.64419 4.78430 5.00667 5.06141 5.22398 5.33225 5.54423 5.65803 5.82302 6.03614 6.13419 6.22703 6.59858 6.92089 6.99211 7.05872 7.07100 7.37602 8.44744 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.023335 B = 0.007738 C = 0.006250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.649403 B = 3617.513321 C = 4478.896454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.028 3.972 3 Si 0.983 3.017 4 H -0.255 1.255 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.498 4.498 8 H 0.085 0.915 9 C 0.068 3.932 10 C -0.175 4.175 11 C 0.040 3.960 12 N -0.566 5.566 13 C 0.256 3.744 14 N -0.591 5.591 15 H 0.429 0.571 16 C -0.027 4.027 17 C -0.062 4.062 18 C -0.059 4.059 19 C 0.481 3.519 20 O -0.549 6.549 21 O -0.508 6.508 22 C -0.160 4.160 23 H 0.282 0.718 24 H 0.090 0.910 25 H 0.258 0.742 26 H 0.133 0.867 27 H 0.139 0.861 28 H 0.425 0.575 29 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.858 -14.288 -0.318 14.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C -0.185 4.185 3 Si 0.804 3.196 4 H -0.179 1.179 5 H -0.200 1.200 6 H -0.183 1.183 7 C -0.529 4.529 8 H 0.103 0.897 9 C 0.064 3.936 10 C -0.197 4.197 11 C -0.075 4.075 12 N -0.289 5.289 13 C -0.031 4.031 14 N -0.206 5.206 15 H 0.269 0.731 16 C -0.134 4.134 17 C -0.065 4.065 18 C -0.096 4.096 19 C 0.324 3.676 20 O -0.438 6.438 21 O -0.322 6.322 22 C -0.180 4.180 23 H 0.092 0.908 24 H 0.108 0.892 25 H 0.274 0.726 26 H 0.151 0.849 27 H 0.157 0.843 28 H 0.286 0.714 29 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 2.198 -13.193 0.303 13.379 hybrid contribution -0.035 0.097 -1.078 1.083 sum 2.163 -13.097 -0.775 13.297 Atomic orbital electron populations 1.69980 1.09327 1.30054 1.37016 1.26804 0.95347 1.04792 0.91585 0.85246 0.78592 0.75600 0.80170 1.17881 1.20010 1.18340 1.19703 0.98104 0.91980 1.43102 0.89674 1.17629 0.92155 0.93506 0.90273 1.20286 1.01101 0.94267 1.04085 1.19237 0.94903 0.94206 0.99169 1.70333 1.18398 1.15484 1.24677 1.26017 0.94453 0.88244 0.94355 1.42605 1.25997 1.09039 1.42979 0.73087 1.18433 0.98749 0.89230 1.06997 1.17802 0.94682 0.94637 0.99348 1.20257 1.01732 0.95280 0.92357 1.23755 0.80743 0.77718 0.85354 1.90806 1.33305 1.52161 1.67571 1.84485 1.63924 1.40257 1.43493 1.20875 1.02704 0.91631 1.02780 0.90760 0.89168 0.72607 0.84918 0.84332 0.71412 0.85945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -48.63 10.96 21.82 0.24 -48.39 15 2 C 0.03 1.50 5.14 85.23 0.44 1.94 15 3 Si 0.98 40.64 29.59 68.60 2.03 42.67 15 4 H -0.25 -9.92 7.11 99.48 0.71 -9.22 15 5 H -0.28 -11.03 7.11 99.48 0.71 -10.32 15 6 H -0.26 -10.36 7.11 99.48 0.71 -9.65 15 7 C -0.50 -27.81 9.04 23.43 0.21 -27.60 15 8 H 0.09 4.39 7.90 -2.91 -0.02 4.37 15 9 C 0.07 3.85 5.57 -21.31 -0.12 3.74 15 10 C -0.17 -10.37 8.73 22.99 0.20 -10.17 15 11 C 0.04 2.11 7.21 39.38 0.28 2.40 15 12 N -0.57 -26.80 11.28 -192.05 -2.17 -28.96 15 13 C 0.26 8.50 12.96 180.05 2.33 10.83 15 14 N -0.59 -18.89 6.21 -190.57 -1.18 -20.07 15 15 H 0.43 9.34 8.96 -92.71 -0.83 8.51 15 16 C -0.03 -1.17 6.99 39.14 0.27 -0.90 15 17 C -0.06 -2.51 4.34 -20.08 -0.09 -2.59 15 18 C -0.06 -1.59 5.93 29.10 0.17 -1.42 15 19 C 0.48 13.82 8.32 71.24 0.59 14.41 15 20 O -0.55 -22.04 16.79 21.96 0.37 -21.67 15 21 O -0.51 -9.82 13.42 -51.35 -0.69 -10.51 15 22 C -0.16 -7.60 9.31 22.48 0.21 -7.39 15 23 H 0.28 15.07 8.30 -92.71 -0.77 14.31 15 24 H 0.09 5.83 6.19 -2.91 -0.02 5.81 15 25 H 0.26 4.92 8.06 -2.91 -0.02 4.89 15 26 H 0.13 2.60 8.12 -2.39 -0.02 2.58 15 27 H 0.14 3.00 8.03 -2.38 -0.02 2.99 15 28 H 0.42 4.89 9.10 -74.06 -0.67 4.22 15 29 H 0.12 5.16 8.04 -2.91 -0.02 5.13 15 Total: -1.00 -82.89 265.83 2.83 -80.06 By element: Atomic # 1 Polarization: 23.90 SS G_CDS: -0.28 Total: 23.62 kcal Atomic # 6 Polarization: -21.26 SS G_CDS: 4.51 Total: -16.75 kcal Atomic # 7 Polarization: -94.32 SS G_CDS: -3.11 Total: -97.43 kcal Atomic # 8 Polarization: -31.86 SS G_CDS: -0.32 Total: -32.18 kcal Atomic # 14 Polarization: 40.64 SS G_CDS: 2.03 Total: 42.67 kcal Total: -82.89 2.83 -80.06 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396115558.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.723 kcal (2) G-P(sol) polarization free energy of solvation -82.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds