Wall clock time and date at job start Mon Mar 30 2020 04:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34751 * 116.99800 * 2 1 4 4 O 1.21503 * 120.00097 * 0.02562 * 3 2 1 5 5 C 1.47479 * 119.99651 * 179.97438 * 3 2 1 6 6 C 1.38782 * 120.09257 * 359.97438 * 5 3 2 7 7 C 1.40721 * 120.04484 * 180.02562 * 6 5 3 8 8 C 1.41408 * 119.91525 * 179.97438 * 7 6 5 9 9 H 1.08002 * 119.99609 * 334.82035 * 8 7 6 10 10 C 1.39864 * 120.00184 * 154.82335 * 8 7 6 11 11 N 1.30884 * 119.99586 * 342.05246 * 10 8 7 12 12 Si 1.86795 * 120.00266 * 162.05800 * 10 8 7 13 13 H 1.48498 * 109.47315 * 94.63455 * 12 10 8 14 14 H 1.48502 * 109.47240 * 214.64000 * 12 10 8 15 15 H 1.48502 * 109.46963 * 334.63684 * 12 10 8 16 16 C 1.40451 * 120.17242 * 359.97438 * 7 6 5 17 17 C 1.39054 * 119.90665 * 0.02562 * 16 7 6 18 18 N 1.36037 * 133.29390 * 179.97438 * 17 16 7 19 19 C 1.30032 * 109.46253 * 180.02562 * 18 17 16 20 20 N 1.36196 * 110.11992 * 0.27181 * 19 18 17 21 21 H 0.97005 * 126.25582 * 179.73120 * 20 19 18 22 22 C 1.37260 * 107.48868 * 359.56972 * 20 19 18 23 23 H 1.08997 * 109.46929 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46870 * 300.00237 * 1 2 3 25 25 H 1.09002 * 109.46958 * 59.99653 * 1 2 3 26 26 H 1.08001 * 119.97724 * 0.03015 * 6 5 3 27 27 H 0.97003 * 119.99793 * 180.02562 * 11 10 8 28 28 H 1.08002 * 120.04370 * 180.02562 * 16 7 6 29 29 H 1.08009 * 124.93753 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2007 0.0000 4 8 1.4020 2.2197 0.0005 5 6 3.5365 1.2778 0.0006 6 6 4.2942 0.1151 0.0016 7 6 5.6994 0.1899 0.0027 8 6 6.4688 -0.9966 0.0044 9 1 6.0520 -1.9098 0.4028 10 6 7.7695 -0.9874 -0.5098 11 7 8.1551 -0.0154 -1.2969 12 14 8.9561 -2.3625 -0.0735 13 1 8.9169 -3.4043 -1.1309 14 1 10.3323 -1.8142 0.0307 15 1 8.5624 -2.9619 1.2269 16 6 6.3398 1.4399 0.0022 17 6 5.5832 2.6065 0.0011 18 7 5.9063 3.9280 0.0008 19 6 4.8182 4.6400 0.0002 20 7 3.7259 3.8265 0.0061 21 1 2.7986 4.1112 0.0107 22 6 4.1771 2.5302 0.0008 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 3.8051 -0.8478 0.0016 27 1 9.0570 -0.0092 -1.6539 28 1 7.4185 1.4949 0.0026 29 1 4.7855 5.7196 0.0003 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396117989.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:58 Heat of formation + Delta-G solvation = -25.094810 kcal Electronic energy + Delta-G solvation = -17111.635873 eV Core-core repulsion = 14193.201623 eV Total energy + Delta-G solvation = -2918.434250 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.05398 -39.69947 -36.35568 -35.98370 -33.37156 -32.02165 -29.59747 -28.81521 -27.19095 -25.22651 -23.20746 -21.54713 -20.63467 -20.08124 -17.69520 -17.22050 -16.79073 -15.96012 -15.76357 -15.40734 -14.94760 -14.17722 -13.86281 -13.20676 -13.09962 -12.97761 -12.74771 -12.07990 -11.83979 -11.36571 -11.16302 -10.91850 -10.68026 -10.52750 -10.32710 -10.11763 -9.89189 -9.70012 -9.19964 -9.00804 -7.40065 -7.17114 -6.76306 -4.36590 1.54789 2.56480 2.93989 3.10391 3.14356 3.16637 3.29393 3.87940 3.88594 3.94956 4.57629 5.16164 5.25409 5.30628 5.31800 5.47794 5.63280 5.80171 6.22779 6.44809 6.54718 6.64887 6.71524 7.12114 7.17810 7.26506 7.64377 7.80663 7.89496 8.20941 8.28053 8.38590 8.74337 8.79239 8.87024 10.19976 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.021629 B = 0.008012 C = 0.005956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.244467 B = 3493.936892 C = 4700.366237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.352 6.352 3 C 0.517 3.483 4 O -0.543 6.543 5 C -0.130 4.130 6 C -0.091 4.091 7 C 0.076 3.924 8 C -0.463 4.463 9 H 0.082 0.918 10 C 0.075 3.925 11 N -0.794 5.794 12 Si 0.908 3.092 13 H -0.271 1.271 14 H -0.276 1.276 15 H -0.260 1.260 16 C -0.089 4.089 17 C 0.056 3.944 18 N -0.503 5.503 19 C 0.226 3.774 20 N -0.598 5.598 21 H 0.418 0.582 22 C 0.022 3.978 23 H 0.097 0.903 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.123 0.877 27 H 0.282 0.718 28 H 0.134 0.866 29 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.848 1.068 1.722 8.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.269 6.269 3 C 0.366 3.634 4 O -0.436 6.436 5 C -0.135 4.135 6 C -0.111 4.111 7 C 0.072 3.928 8 C -0.493 4.493 9 H 0.100 0.900 10 C -0.143 4.143 11 N -0.420 5.420 12 Si 0.733 3.267 13 H -0.197 1.197 14 H -0.201 1.201 15 H -0.184 1.184 16 C -0.111 4.111 17 C -0.059 4.059 18 N -0.225 5.225 19 C -0.061 4.061 20 N -0.212 5.212 21 H 0.256 0.744 22 C -0.087 4.087 23 H 0.116 0.884 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.141 0.859 27 H 0.093 0.907 28 H 0.151 0.849 29 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -6.975 1.665 1.578 7.343 hybrid contribution -0.985 -0.523 0.003 1.115 sum -7.960 1.142 1.581 8.195 Atomic orbital electron populations 1.23159 0.77364 1.03144 1.02004 1.86628 1.22428 1.33224 1.84581 1.21657 0.89637 0.80723 0.71340 1.90656 1.67424 1.36264 1.49215 1.17566 0.86501 0.91949 1.17445 1.21515 0.94230 0.95093 1.00218 1.17291 0.89973 0.93190 0.92318 1.19379 0.97550 0.96010 1.36343 0.89961 1.25845 0.98849 0.96956 0.92602 1.69812 1.19337 1.31006 1.21842 0.86300 0.79417 0.80961 0.80068 1.19665 1.20076 1.18411 1.20751 0.99990 0.87839 1.02532 1.18994 0.89560 0.91430 1.05947 1.70458 1.27337 1.02610 1.22093 1.24993 0.81492 0.97635 1.02002 1.42851 1.09651 1.05156 1.63591 0.74394 1.18282 0.94568 0.83972 1.11857 0.88444 0.92363 0.92355 0.85902 0.90677 0.84875 0.78273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.47 10.57 101.05 1.07 1.54 15 2 O -0.35 -6.18 9.79 -40.63 -0.40 -6.58 15 3 C 0.52 10.41 7.89 34.50 0.27 10.68 15 4 O -0.54 -11.01 15.02 -19.27 -0.29 -11.30 15 5 C -0.13 -2.91 5.87 -105.01 -0.62 -3.53 15 6 C -0.09 -2.08 9.33 -38.44 -0.36 -2.44 15 7 C 0.08 1.94 5.56 -106.92 -0.59 1.35 15 8 C -0.46 -11.58 9.03 -37.77 -0.34 -11.93 15 9 H 0.08 1.94 7.91 -52.49 -0.41 1.52 15 10 C 0.08 1.82 5.12 -17.35 -0.09 1.73 15 11 N -0.79 -20.22 10.99 55.54 0.61 -19.61 15 12 Si 0.91 18.12 29.60 -169.99 -5.03 13.09 15 13 H -0.27 -5.34 7.11 56.52 0.40 -4.94 15 14 H -0.28 -5.46 7.11 56.52 0.40 -5.05 15 15 H -0.26 -5.13 7.11 56.52 0.40 -4.73 15 16 C -0.09 -2.33 8.72 -38.45 -0.34 -2.66 15 17 C 0.06 1.39 7.20 -84.72 -0.61 0.78 15 18 N -0.50 -11.45 11.29 -12.06 -0.14 -11.58 15 19 C 0.23 4.08 12.97 -89.70 -1.16 2.92 15 20 N -0.60 -11.43 5.98 -11.39 -0.07 -11.50 15 21 H 0.42 7.04 7.66 -40.82 -0.31 6.73 15 22 C 0.02 0.51 6.89 -83.54 -0.58 -0.06 15 23 H 0.10 0.91 8.14 -51.93 -0.42 0.49 15 24 H 0.06 0.70 8.14 -51.93 -0.42 0.28 15 25 H 0.06 0.71 8.14 -51.93 -0.42 0.29 15 26 H 0.12 2.58 7.58 -52.49 -0.40 2.19 15 27 H 0.28 6.58 8.30 -40.82 -0.34 6.24 15 28 H 0.13 3.65 6.17 -52.49 -0.32 3.33 15 29 H 0.20 2.44 8.06 -52.48 -0.42 2.02 15 LS Contribution 263.21 15.07 3.97 3.97 Total: -1.00 -29.83 263.21 -6.96 -36.79 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -2.27 Total: 8.35 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: -3.34 Total: -1.62 kcal Atomic # 7 Polarization: -43.10 SS G_CDS: 0.41 Total: -42.70 kcal Atomic # 8 Polarization: -17.19 SS G_CDS: -0.69 Total: -17.88 kcal Atomic # 14 Polarization: 18.12 SS G_CDS: -5.03 Total: 13.09 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -29.83 -6.96 -36.79 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396117989.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.695 kcal (2) G-P(sol) polarization free energy of solvation -29.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds