Wall clock time and date at job start Mon Mar 30 2020 04:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34751 * 116.99800 * 2 1 4 4 O 1.21503 * 120.00097 * 0.02562 * 3 2 1 5 5 C 1.47479 * 119.99651 * 179.97438 * 3 2 1 6 6 C 1.38782 * 120.09257 * 359.97438 * 5 3 2 7 7 C 1.40721 * 120.04484 * 180.02562 * 6 5 3 8 8 C 1.41408 * 119.91525 * 179.97438 * 7 6 5 9 9 H 1.08002 * 119.99609 * 334.82035 * 8 7 6 10 10 C 1.39864 * 120.00184 * 154.82335 * 8 7 6 11 11 N 1.30884 * 119.99586 * 342.05246 * 10 8 7 12 12 Si 1.86795 * 120.00266 * 162.05800 * 10 8 7 13 13 H 1.48498 * 109.47315 * 94.63455 * 12 10 8 14 14 H 1.48502 * 109.47240 * 214.64000 * 12 10 8 15 15 H 1.48502 * 109.46963 * 334.63684 * 12 10 8 16 16 C 1.40451 * 120.17242 * 359.97438 * 7 6 5 17 17 C 1.39054 * 119.90665 * 0.02562 * 16 7 6 18 18 N 1.36037 * 133.29390 * 179.97438 * 17 16 7 19 19 C 1.30032 * 109.46253 * 180.02562 * 18 17 16 20 20 N 1.36196 * 110.11992 * 0.27181 * 19 18 17 21 21 H 0.97005 * 126.25582 * 179.73120 * 20 19 18 22 22 C 1.37260 * 107.48868 * 359.56972 * 20 19 18 23 23 H 1.08997 * 109.46929 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46870 * 300.00237 * 1 2 3 25 25 H 1.09002 * 109.46958 * 59.99653 * 1 2 3 26 26 H 1.08001 * 119.97724 * 0.03015 * 6 5 3 27 27 H 0.97003 * 119.99793 * 180.02562 * 11 10 8 28 28 H 1.08002 * 120.04370 * 180.02562 * 16 7 6 29 29 H 1.08009 * 124.93753 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2007 0.0000 4 8 1.4020 2.2197 0.0005 5 6 3.5365 1.2778 0.0006 6 6 4.2942 0.1151 0.0016 7 6 5.6994 0.1899 0.0027 8 6 6.4688 -0.9966 0.0044 9 1 6.0520 -1.9098 0.4028 10 6 7.7695 -0.9874 -0.5098 11 7 8.1551 -0.0154 -1.2969 12 14 8.9561 -2.3625 -0.0735 13 1 8.9169 -3.4043 -1.1309 14 1 10.3323 -1.8142 0.0307 15 1 8.5624 -2.9619 1.2269 16 6 6.3398 1.4399 0.0022 17 6 5.5832 2.6065 0.0011 18 7 5.9063 3.9280 0.0008 19 6 4.8182 4.6400 0.0002 20 7 3.7259 3.8265 0.0061 21 1 2.7986 4.1112 0.0107 22 6 4.1771 2.5302 0.0008 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 3.8051 -0.8478 0.0016 27 1 9.0570 -0.0092 -1.6539 28 1 7.4185 1.4949 0.0026 29 1 4.7855 5.7196 0.0003 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396117989.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:58 Heat of formation + Delta-G solvation = -42.977209 kcal Electronic energy + Delta-G solvation = -17112.411312 eV Core-core repulsion = 14193.201623 eV Total energy + Delta-G solvation = -2919.209689 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.71281 -41.19003 -38.11671 -37.44938 -35.17582 -33.70466 -31.33955 -30.51985 -28.40570 -27.04606 -24.84645 -23.12692 -22.39301 -21.67347 -19.41931 -18.83493 -18.33144 -17.51297 -17.34603 -16.96027 -16.65504 -15.81805 -15.50770 -14.84911 -14.58315 -14.35591 -14.27776 -13.73921 -13.27323 -12.93367 -12.75815 -12.65336 -12.40685 -12.00649 -11.86981 -11.79698 -11.55240 -11.40079 -10.95105 -10.75324 -9.19745 -8.95049 -8.57969 -6.27053 -0.16657 0.84361 1.34006 1.46204 1.59351 1.65603 1.77444 2.24041 2.27191 2.35341 2.76216 3.59308 3.70139 3.86711 4.22745 4.31985 4.34398 4.51362 4.67900 4.75837 4.87758 4.90992 5.20545 5.29799 5.34535 5.53240 5.85774 5.96076 6.02413 6.47346 6.70124 6.79692 6.89720 6.92780 7.20586 8.40243 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.021629 B = 0.008012 C = 0.005956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.244467 B = 3493.936892 C = 4700.366237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.358 6.358 3 C 0.522 3.478 4 O -0.545 6.545 5 C -0.131 4.131 6 C -0.097 4.097 7 C 0.057 3.943 8 C -0.490 4.490 9 H 0.090 0.910 10 C 0.034 3.966 11 N -0.830 5.830 12 Si 0.982 3.018 13 H -0.262 1.262 14 H -0.274 1.274 15 H -0.254 1.254 16 C -0.125 4.125 17 C 0.037 3.963 18 N -0.550 5.550 19 C 0.259 3.741 20 N -0.588 5.588 21 H 0.431 0.569 22 C 0.005 3.995 23 H 0.134 0.866 24 H 0.065 0.935 25 H 0.063 0.937 26 H 0.139 0.861 27 H 0.287 0.713 28 H 0.107 0.893 29 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.456 1.144 1.995 9.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.274 6.274 3 C 0.371 3.629 4 O -0.438 6.438 5 C -0.135 4.135 6 C -0.117 4.117 7 C 0.053 3.947 8 C -0.520 4.520 9 H 0.108 0.892 10 C -0.181 4.181 11 N -0.457 5.457 12 Si 0.803 3.197 13 H -0.187 1.187 14 H -0.198 1.198 15 H -0.178 1.178 16 C -0.148 4.148 17 C -0.078 4.078 18 N -0.272 5.272 19 C -0.028 4.028 20 N -0.203 5.203 21 H 0.272 0.728 22 C -0.105 4.105 23 H 0.152 0.848 24 H 0.084 0.916 25 H 0.082 0.918 26 H 0.156 0.844 27 H 0.097 0.903 28 H 0.125 0.875 29 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges -8.637 1.739 1.851 9.003 hybrid contribution -0.665 -0.424 -0.091 0.794 sum -9.301 1.315 1.760 9.557 Atomic orbital electron populations 1.23603 0.74279 1.05887 1.02642 1.86598 1.25347 1.31558 1.83848 1.21188 0.88734 0.81546 0.71418 1.90640 1.67292 1.36561 1.49289 1.17831 0.88295 0.91653 1.15746 1.21627 0.93437 0.96214 1.00445 1.17582 0.91282 0.93241 0.92565 1.19714 0.98710 0.96332 1.37243 0.89158 1.26735 1.00150 0.99343 0.91843 1.69908 1.19940 1.32988 1.22837 0.85190 0.76767 0.77761 0.79998 1.18703 1.19843 1.17789 1.20584 0.98939 0.89197 1.06034 1.19154 0.90638 0.92100 1.05920 1.70451 1.29650 1.02026 1.25088 1.26196 0.79790 0.99656 0.97120 1.42872 1.10690 1.03844 1.62925 0.72821 1.18401 0.94102 0.85633 1.12389 0.84770 0.91639 0.91807 0.84370 0.90278 0.87514 0.72103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 10.57 113.37 1.20 1.83 15 2 O -0.36 -11.80 9.79 -56.61 -0.55 -12.35 15 3 C 0.52 20.24 7.89 70.26 0.55 20.79 15 4 O -0.54 -20.89 15.02 19.83 0.30 -20.59 15 5 C -0.13 -5.84 5.87 -20.12 -0.12 -5.96 15 6 C -0.10 -4.56 9.33 23.01 0.21 -4.35 15 7 C 0.06 3.03 5.56 -21.35 -0.12 2.91 15 8 C -0.49 -25.33 9.03 23.44 0.21 -25.12 15 9 H 0.09 4.34 7.91 -2.91 -0.02 4.32 15 10 C 0.03 1.68 5.12 85.23 0.44 2.11 15 11 N -0.83 -44.09 10.99 21.81 0.24 -43.85 15 12 Si 0.98 37.66 29.60 68.60 2.03 39.69 15 13 H -0.26 -9.61 7.11 99.48 0.71 -8.91 15 14 H -0.27 -10.28 7.11 99.48 0.71 -9.58 15 15 H -0.25 -9.41 7.11 99.48 0.71 -8.71 15 16 C -0.13 -6.89 8.72 23.01 0.20 -6.69 15 17 C 0.04 1.89 7.20 39.32 0.28 2.17 15 18 N -0.55 -24.92 11.29 -192.06 -2.17 -27.09 15 19 C 0.26 8.70 12.97 180.03 2.33 11.04 15 20 N -0.59 -21.29 5.98 -189.96 -1.14 -22.43 15 21 H 0.43 13.30 7.66 -92.70 -0.71 12.59 15 22 C 0.00 0.21 6.89 39.52 0.27 0.48 15 23 H 0.13 1.99 8.14 -2.39 -0.02 1.97 15 24 H 0.06 1.38 8.14 -2.39 -0.02 1.36 15 25 H 0.06 1.36 8.14 -2.39 -0.02 1.35 15 26 H 0.14 5.84 7.58 -2.91 -0.02 5.81 15 27 H 0.29 13.91 8.30 -92.71 -0.77 13.14 15 28 H 0.11 6.29 6.17 -2.91 -0.02 6.28 15 29 H 0.26 5.06 8.06 -2.91 -0.02 5.04 15 Total: -1.00 -67.41 263.21 4.67 -62.74 By element: Atomic # 1 Polarization: 24.16 SS G_CDS: 0.50 Total: 24.65 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: 5.47 Total: -0.78 kcal Atomic # 7 Polarization: -90.30 SS G_CDS: -3.07 Total: -93.37 kcal Atomic # 8 Polarization: -32.68 SS G_CDS: -0.26 Total: -32.94 kcal Atomic # 14 Polarization: 37.66 SS G_CDS: 2.03 Total: 39.69 kcal Total: -67.41 4.67 -62.74 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396117989.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.765 kcal (2) G-P(sol) polarization free energy of solvation -67.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds