Wall clock time and date at job start Mon Mar 30 2020 04:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34821 * 116.99951 * 2 1 4 4 O 1.21543 * 119.99817 * 359.97438 * 3 2 1 5 5 C 1.47216 * 119.99876 * 180.02562 * 3 2 1 6 6 C 1.40035 * 119.71039 * 359.97438 * 5 3 2 7 7 C 1.36086 * 121.39705 * 180.02562 * 6 5 3 8 8 C 1.41039 * 120.49552 * 359.97438 * 7 6 5 9 9 C 1.40356 * 120.54016 * 179.97438 * 8 7 6 10 10 H 1.07997 * 119.99990 * 204.45165 * 9 8 7 11 11 C 1.40404 * 119.99645 * 24.45483 * 9 8 7 12 12 N 1.30577 * 119.99993 * 17.75800 * 11 9 8 13 13 Si 1.86797 * 119.99773 * 197.75906 * 11 9 8 14 14 H 1.48499 * 109.47264 * 90.00096 * 13 11 9 15 15 H 1.48500 * 109.46913 * 210.00307 * 13 11 9 16 16 H 1.48503 * 109.46961 * 329.99738 * 13 11 9 17 17 C 1.46463 * 118.92394 * 0.02562 * 8 7 6 18 18 N 1.34320 * 133.91077 * 180.33519 * 17 8 7 19 19 C 1.30501 * 109.66825 * 180.02562 * 18 17 8 20 20 N 1.35953 * 109.87407 * 359.60329 * 19 18 17 21 21 H 0.97006 * 126.40541 * 180.20791 * 20 19 18 22 22 C 1.37583 * 107.18440 * 0.23910 * 20 19 18 23 23 H 1.09000 * 109.47195 * 59.99730 * 1 2 3 24 24 H 1.08995 * 109.47153 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47058 * 300.00196 * 1 2 3 26 26 H 1.08007 * 119.30246 * 0.02562 * 6 5 3 27 27 H 1.08002 * 119.75420 * 179.97438 * 7 6 5 28 28 H 0.96997 * 120.00144 * 180.02562 * 12 11 9 29 29 H 1.07997 * 125.06465 * 179.86426 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0641 1.2013 0.0000 4 8 1.4021 2.2206 -0.0005 5 6 3.5342 1.2783 -0.0006 6 6 4.2910 0.1000 -0.0006 7 6 5.6515 0.1312 -0.0006 8 6 6.3392 1.3626 -0.0011 9 6 7.7423 1.3958 -0.0006 10 1 8.2619 2.2600 0.3862 11 6 8.4705 0.3055 -0.5029 12 7 7.8851 -0.5712 -1.2735 13 14 10.2767 0.1091 -0.0689 14 1 10.4029 -0.6970 1.1718 15 1 10.9808 -0.5794 -1.1804 16 1 10.8823 1.4478 0.1468 17 6 5.5654 2.6061 -0.0011 18 7 5.8947 3.9083 -0.0072 19 6 4.8111 4.6354 -0.0033 20 7 3.7149 3.8313 -0.0032 21 1 2.7889 4.1203 -0.0035 22 6 4.1646 2.5311 -0.0019 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 3.7841 -0.8537 -0.0006 27 1 6.2088 -0.7939 -0.0001 28 1 8.3881 -1.3246 -1.6203 29 1 4.7885 5.7152 -0.0045 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396118495.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:00 Heat of formation + Delta-G solvation = -32.192008 kcal Electronic energy + Delta-G solvation = -17124.970046 eV Core-core repulsion = 14206.228039 eV Total energy + Delta-G solvation = -2918.742008 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.80002 -39.20671 -36.16321 -35.50751 -33.88841 -31.81189 -29.60643 -28.12151 -27.49945 -25.60317 -22.41783 -21.31471 -20.63177 -19.81988 -18.07308 -16.91733 -16.49363 -15.60870 -15.55255 -15.34985 -15.09597 -13.95138 -13.79326 -13.15965 -13.01297 -12.61694 -12.55192 -12.18534 -11.70314 -11.50917 -11.42738 -11.03271 -10.60711 -10.30541 -10.18202 -10.10889 -9.70489 -9.51434 -9.26303 -8.87973 -7.43388 -7.33151 -7.11873 -4.72412 1.89318 2.81159 2.85492 2.89557 2.89966 3.47393 3.57661 3.62582 4.05198 4.10789 4.37377 5.37178 5.45523 5.47693 5.53911 5.69083 5.93285 6.17648 6.30344 6.52099 6.58113 6.68431 6.92782 7.13372 7.30861 7.50078 7.70642 7.74060 7.82256 8.20087 8.34447 8.42661 8.55963 8.79786 9.15518 9.53418 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.027766 B = 0.007283 C = 0.005867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.180032 B = 3843.753302 C = 4770.962743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.364 6.364 3 C 0.511 3.489 4 O -0.576 6.576 5 C -0.305 4.305 6 C 0.006 3.994 7 C -0.228 4.228 8 C 0.179 3.821 9 C -0.370 4.370 10 H 0.101 0.899 11 C 0.065 3.935 12 N -0.733 5.733 13 Si 0.925 3.075 14 H -0.259 1.259 15 H -0.271 1.271 16 H -0.253 1.253 17 C -0.054 4.054 18 N -0.461 5.461 19 C 0.147 3.853 20 N -0.589 5.589 21 H 0.418 0.582 22 C 0.150 3.850 23 H 0.053 0.947 24 H 0.090 0.910 25 H 0.053 0.947 26 H 0.107 0.893 27 H 0.127 0.873 28 H 0.296 0.704 29 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.108 -0.865 1.282 3.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.281 6.281 3 C 0.367 3.633 4 O -0.473 6.473 5 C -0.312 4.312 6 C -0.014 4.014 7 C -0.248 4.248 8 C 0.174 3.826 9 C -0.395 4.395 10 H 0.119 0.881 11 C -0.162 4.162 12 N -0.352 5.352 13 Si 0.747 3.253 14 H -0.184 1.184 15 H -0.195 1.195 16 H -0.176 1.176 17 C -0.176 4.176 18 N -0.179 5.179 19 C -0.135 4.135 20 N -0.199 5.199 21 H 0.256 0.744 22 C 0.035 3.965 23 H 0.071 0.929 24 H 0.108 0.892 25 H 0.071 0.929 26 H 0.125 0.875 27 H 0.145 0.855 28 H 0.108 0.892 29 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -2.370 -0.510 1.106 2.665 hybrid contribution -0.969 -0.124 -0.010 0.977 sum -3.340 -0.634 1.097 3.572 Atomic orbital electron populations 1.23000 0.78540 1.02287 1.01568 1.86596 1.21493 1.34307 1.85751 1.21394 0.89444 0.80171 0.72307 1.90598 1.67514 1.36192 1.52965 1.16780 0.86291 0.91028 1.37095 1.20296 0.93974 0.94894 0.92276 1.20606 0.92632 0.97310 1.14275 1.18013 0.92141 0.87697 0.84787 1.20171 0.91837 1.00905 1.26592 0.88138 1.26435 1.03040 0.94076 0.92643 1.69734 1.39698 1.08643 1.17169 0.85989 0.79205 0.80501 0.79579 1.18383 1.19540 1.17638 1.19841 0.89413 0.91119 1.17228 1.69584 1.28162 1.02678 1.17476 1.24640 0.81085 0.97347 1.10421 1.42988 1.09807 1.05507 1.61648 0.74378 1.18353 0.94236 0.83892 1.00023 0.92869 0.89170 0.92871 0.87507 0.85510 0.89245 0.78863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.60 10.57 101.05 1.07 1.67 15 2 O -0.36 -7.17 9.74 -40.82 -0.40 -7.57 15 3 C 0.51 11.56 7.88 34.38 0.27 11.83 15 4 O -0.58 -13.32 15.00 -19.30 -0.29 -13.61 15 5 C -0.31 -7.39 5.89 -104.82 -0.62 -8.00 15 6 C 0.01 0.13 9.47 -39.68 -0.38 -0.25 15 7 C -0.23 -5.56 8.63 -39.29 -0.34 -5.89 15 8 C 0.18 4.62 5.73 -104.73 -0.60 4.02 15 9 C -0.37 -9.04 9.08 -37.97 -0.34 -9.39 15 10 H 0.10 2.43 7.91 -52.49 -0.42 2.01 15 11 C 0.06 1.42 5.15 -17.27 -0.09 1.33 15 12 N -0.73 -16.39 10.95 55.57 0.61 -15.78 15 13 Si 0.93 16.17 29.60 -169.99 -5.03 11.14 15 14 H -0.26 -4.45 7.11 56.52 0.40 -4.05 15 15 H -0.27 -4.58 7.11 56.52 0.40 -4.18 15 16 H -0.25 -4.46 7.11 56.52 0.40 -4.06 15 17 C -0.05 -1.39 7.19 -82.70 -0.59 -1.98 15 18 N -0.46 -11.16 11.23 -10.58 -0.12 -11.28 15 19 C 0.15 2.97 12.99 -89.54 -1.16 1.80 15 20 N -0.59 -12.52 6.00 -11.52 -0.07 -12.59 15 21 H 0.42 8.05 7.68 -40.82 -0.31 7.73 15 22 C 0.15 3.71 6.86 -83.76 -0.57 3.14 15 23 H 0.05 0.77 8.14 -51.93 -0.42 0.34 15 24 H 0.09 1.00 8.14 -51.93 -0.42 0.58 15 25 H 0.05 0.76 8.14 -51.93 -0.42 0.34 15 26 H 0.11 2.23 7.52 -52.48 -0.39 1.84 15 27 H 0.13 3.03 6.15 -52.49 -0.32 2.71 15 28 H 0.30 5.80 8.29 -40.82 -0.34 5.46 15 29 H 0.19 2.85 8.06 -52.49 -0.42 2.43 15 LS Contribution 263.28 15.07 3.97 3.97 Total: -1.00 -29.33 263.28 -6.96 -36.29 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -2.27 Total: 11.16 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: -3.36 Total: -1.72 kcal Atomic # 7 Polarization: -40.07 SS G_CDS: 0.42 Total: -39.65 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: -0.69 Total: -21.18 kcal Atomic # 14 Polarization: 16.17 SS G_CDS: -5.03 Total: 11.14 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -29.33 -6.96 -36.29 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396118495.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.094 kcal (2) G-P(sol) polarization free energy of solvation -29.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds