Wall clock time and date at job start Mon Mar 30 2020 04:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34821 * 116.99951 * 2 1 4 4 O 1.21543 * 119.99817 * 359.97438 * 3 2 1 5 5 C 1.47216 * 119.99876 * 180.02562 * 3 2 1 6 6 C 1.40035 * 119.71039 * 359.97438 * 5 3 2 7 7 C 1.36086 * 121.39705 * 180.02562 * 6 5 3 8 8 C 1.41039 * 120.49552 * 359.97438 * 7 6 5 9 9 C 1.40356 * 120.54016 * 179.97438 * 8 7 6 10 10 H 1.07997 * 119.99990 * 204.45165 * 9 8 7 11 11 C 1.40404 * 119.99645 * 24.45483 * 9 8 7 12 12 N 1.30577 * 119.99993 * 17.75800 * 11 9 8 13 13 Si 1.86797 * 119.99773 * 197.75906 * 11 9 8 14 14 H 1.48499 * 109.47264 * 90.00096 * 13 11 9 15 15 H 1.48500 * 109.46913 * 210.00307 * 13 11 9 16 16 H 1.48503 * 109.46961 * 329.99738 * 13 11 9 17 17 C 1.46463 * 118.92394 * 0.02562 * 8 7 6 18 18 N 1.34320 * 133.91077 * 180.33519 * 17 8 7 19 19 C 1.30501 * 109.66825 * 180.02562 * 18 17 8 20 20 N 1.35953 * 109.87407 * 359.60329 * 19 18 17 21 21 H 0.97006 * 126.40541 * 180.20791 * 20 19 18 22 22 C 1.37583 * 107.18440 * 0.23910 * 20 19 18 23 23 H 1.09000 * 109.47195 * 59.99730 * 1 2 3 24 24 H 1.08995 * 109.47153 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47058 * 300.00196 * 1 2 3 26 26 H 1.08007 * 119.30246 * 0.02562 * 6 5 3 27 27 H 1.08002 * 119.75420 * 179.97438 * 7 6 5 28 28 H 0.96997 * 120.00144 * 180.02562 * 12 11 9 29 29 H 1.07997 * 125.06465 * 179.86426 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0641 1.2013 0.0000 4 8 1.4021 2.2206 -0.0005 5 6 3.5342 1.2783 -0.0006 6 6 4.2910 0.1000 -0.0006 7 6 5.6515 0.1312 -0.0006 8 6 6.3392 1.3626 -0.0011 9 6 7.7423 1.3958 -0.0006 10 1 8.2619 2.2600 0.3862 11 6 8.4705 0.3055 -0.5029 12 7 7.8851 -0.5712 -1.2735 13 14 10.2767 0.1091 -0.0689 14 1 10.4029 -0.6970 1.1718 15 1 10.9808 -0.5794 -1.1804 16 1 10.8823 1.4478 0.1468 17 6 5.5654 2.6061 -0.0011 18 7 5.8947 3.9083 -0.0072 19 6 4.8111 4.6354 -0.0033 20 7 3.7149 3.8313 -0.0032 21 1 2.7889 4.1203 -0.0035 22 6 4.1646 2.5311 -0.0019 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 3.7841 -0.8537 -0.0006 27 1 6.2088 -0.7939 -0.0001 28 1 8.3881 -1.3246 -1.6203 29 1 4.7885 5.7152 -0.0045 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396118495.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:00 Heat of formation + Delta-G solvation = -49.273211 kcal Electronic energy + Delta-G solvation = -17125.710743 eV Core-core repulsion = 14206.228039 eV Total energy + Delta-G solvation = -2919.482704 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.54795 -40.85356 -37.93012 -37.14073 -35.62646 -33.57084 -31.37011 -29.91099 -28.94165 -27.22793 -24.14490 -23.01202 -22.41533 -21.52924 -19.81851 -18.59936 -18.20067 -17.27988 -17.09944 -16.99778 -16.73701 -15.69808 -15.38249 -14.89709 -14.53931 -14.15979 -14.10657 -13.82771 -13.31799 -13.01426 -12.92110 -12.64484 -12.23642 -11.95585 -11.84136 -11.65578 -11.40891 -11.27654 -10.98231 -10.65603 -9.15149 -9.14977 -8.87938 -6.54494 0.13095 1.11133 1.36358 1.41157 1.55888 1.76986 2.11210 2.13689 2.33032 2.44614 2.62898 3.57295 3.81463 4.21093 4.36781 4.37733 4.48628 4.55877 4.70392 4.81205 4.85897 4.91025 5.16047 5.46814 5.51187 5.68538 5.91412 5.93766 6.02151 6.38747 6.53283 6.64187 6.90184 7.09322 7.40157 7.91939 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.027766 B = 0.007283 C = 0.005867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.180032 B = 3843.753302 C = 4770.962743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.369 6.369 3 C 0.514 3.486 4 O -0.586 6.586 5 C -0.325 4.325 6 C 0.005 3.995 7 C -0.241 4.241 8 C 0.147 3.853 9 C -0.394 4.394 10 H 0.092 0.908 11 C 0.032 3.968 12 N -0.756 5.756 13 Si 0.999 3.001 14 H -0.251 1.251 15 H -0.256 1.256 16 H -0.257 1.257 17 C -0.087 4.087 18 N -0.501 5.501 19 C 0.177 3.823 20 N -0.583 5.583 21 H 0.427 0.573 22 C 0.126 3.874 23 H 0.055 0.945 24 H 0.131 0.869 25 H 0.056 0.944 26 H 0.126 0.874 27 H 0.126 0.874 28 H 0.310 0.690 29 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.233 -0.908 1.319 3.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.286 6.286 3 C 0.369 3.631 4 O -0.484 6.484 5 C -0.332 4.332 6 C -0.015 4.015 7 C -0.262 4.262 8 C 0.142 3.858 9 C -0.418 4.418 10 H 0.110 0.890 11 C -0.192 4.192 12 N -0.376 5.376 13 Si 0.817 3.183 14 H -0.175 1.175 15 H -0.180 1.180 16 H -0.181 1.181 17 C -0.208 4.208 18 N -0.220 5.220 19 C -0.106 4.106 20 N -0.195 5.195 21 H 0.268 0.732 22 C 0.010 3.990 23 H 0.074 0.926 24 H 0.149 0.851 25 H 0.075 0.925 26 H 0.144 0.856 27 H 0.143 0.857 28 H 0.122 0.878 29 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -2.542 -0.580 1.135 2.844 hybrid contribution -1.074 -0.049 -0.048 1.077 sum -3.616 -0.629 1.088 3.828 Atomic orbital electron populations 1.23419 0.75554 1.05184 1.01910 1.86555 1.24365 1.32589 1.85124 1.21149 0.89005 0.80885 0.72052 1.90569 1.67674 1.36717 1.53417 1.17085 0.87661 0.91209 1.37234 1.20480 0.93691 0.95687 0.91657 1.20627 0.93161 0.96948 1.15434 1.18403 0.93133 0.88403 0.85867 1.20338 0.91825 1.01993 1.27639 0.89034 1.27256 1.07198 0.92930 0.91822 1.69716 1.41768 1.09070 1.17086 0.84932 0.73318 0.80246 0.79850 1.17514 1.17954 1.18091 1.20147 0.90295 0.91926 1.18422 1.69572 1.30016 1.02437 1.19955 1.25771 0.79698 0.99228 1.05887 1.43030 1.10635 1.04559 1.61230 0.73232 1.18586 0.94224 0.85300 1.00892 0.92614 0.85077 0.92471 0.85594 0.85668 0.87797 0.73308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.89 10.57 113.37 1.20 2.08 15 2 O -0.37 -14.04 9.74 -57.33 -0.56 -14.59 15 3 C 0.51 22.94 7.88 70.18 0.55 23.49 15 4 O -0.59 -26.57 15.00 19.70 0.30 -26.27 15 5 C -0.33 -15.90 5.89 -20.00 -0.12 -16.02 15 6 C 0.00 0.21 9.47 22.20 0.21 0.42 15 7 C -0.24 -12.15 8.63 22.46 0.19 -11.95 15 8 C 0.15 7.88 5.73 -19.93 -0.11 7.77 15 9 C -0.39 -19.85 9.08 23.31 0.21 -19.64 15 10 H 0.09 4.61 7.91 -2.91 -0.02 4.59 15 11 C 0.03 1.43 5.15 85.41 0.44 1.87 15 12 N -0.76 -34.04 10.95 21.90 0.24 -33.80 15 13 Si 1.00 32.62 29.60 68.60 2.03 34.65 15 14 H -0.25 -7.84 7.11 99.48 0.71 -7.13 15 15 H -0.26 -7.69 7.11 99.48 0.71 -6.98 15 16 H -0.26 -8.50 7.11 99.48 0.71 -7.80 15 17 C -0.09 -4.61 7.19 41.40 0.30 -4.31 15 18 N -0.50 -24.34 11.23 -187.37 -2.10 -26.44 15 19 C 0.18 6.85 12.99 179.97 2.34 9.19 15 20 N -0.58 -24.28 6.00 -190.37 -1.14 -25.42 15 21 H 0.43 15.88 7.68 -92.70 -0.71 15.16 15 22 C 0.13 6.28 6.86 39.22 0.27 6.55 15 23 H 0.06 1.49 8.14 -2.39 -0.02 1.47 15 24 H 0.13 2.46 8.14 -2.39 -0.02 2.44 15 25 H 0.06 1.51 8.14 -2.39 -0.02 1.49 15 26 H 0.13 5.28 7.52 -2.91 -0.02 5.26 15 27 H 0.13 6.17 6.15 -2.91 -0.02 6.16 15 28 H 0.31 11.99 8.29 -92.71 -0.77 11.22 15 29 H 0.25 6.35 8.06 -2.91 -0.02 6.33 15 Total: -1.00 -64.95 263.28 4.74 -60.21 By element: Atomic # 1 Polarization: 31.72 SS G_CDS: 0.50 Total: 32.22 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: 5.48 Total: -0.55 kcal Atomic # 7 Polarization: -82.66 SS G_CDS: -3.01 Total: -85.66 kcal Atomic # 8 Polarization: -40.60 SS G_CDS: -0.26 Total: -40.87 kcal Atomic # 14 Polarization: 32.62 SS G_CDS: 2.03 Total: 34.65 kcal Total: -64.95 4.74 -60.21 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396118495.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.941 kcal (2) G-P(sol) polarization free energy of solvation -64.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds