Wall clock time and date at job start Mon Mar 30 2020 04:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34744 * 117.00397 * 2 1 4 4 O 1.21456 * 119.99606 * 0.02562 * 3 2 1 5 5 C 1.47812 * 119.99926 * 179.97438 * 3 2 1 6 6 N 1.30896 * 125.11312 * 0.02975 * 5 3 2 7 7 C 1.34601 * 109.66134 * 179.97438 * 6 5 3 8 8 C 1.39617 * 133.23951 * 179.97438 * 7 6 5 9 9 C 1.40163 * 119.40610 * 179.33288 * 8 7 6 10 10 C 1.41300 * 119.97593 * 180.18301 * 9 8 7 11 11 H 1.08001 * 119.99680 * 205.11611 * 10 9 8 12 12 C 1.39910 * 120.00026 * 25.11431 * 10 9 8 13 13 N 1.30855 * 119.99917 * 17.86964 * 12 10 9 14 14 Si 1.86800 * 119.99908 * 197.86551 * 12 10 9 15 15 H 1.48497 * 109.47067 * 60.00242 * 14 12 10 16 16 H 1.48497 * 109.47031 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47097 * 300.00028 * 14 12 10 18 18 C 1.41259 * 120.04310 * 0.55536 * 9 8 7 19 19 C 1.35974 * 120.44995 * 359.65303 * 18 9 8 20 20 C 1.39578 * 120.32319 * 359.97438 * 19 18 9 21 21 N 1.37128 * 125.10462 * 180.02562 * 5 3 2 22 22 H 0.96998 * 126.40885 * 359.97438 * 21 5 3 23 23 H 1.09004 * 109.46984 * 59.99463 * 1 2 3 24 24 H 1.08993 * 109.47411 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47157 * 300.00049 * 1 2 3 26 26 H 1.08001 * 120.29729 * 0.02562 * 8 7 6 27 27 H 0.96999 * 120.00002 * 179.97438 * 13 12 10 28 28 H 1.08001 * 119.77802 * 179.62080 * 18 9 8 29 29 H 1.08004 * 119.84061 * 180.02562 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2005 0.0000 4 8 1.4023 2.2192 0.0005 5 6 3.5399 1.2778 0.0006 6 7 4.3477 0.2478 0.0005 7 6 5.6246 0.6737 0.0006 8 6 6.8537 0.0116 0.0010 9 6 8.0387 0.7600 -0.0133 10 6 9.2892 0.1022 -0.0169 11 1 10.1641 0.6035 0.3700 12 6 9.3940 -1.1985 -0.5216 13 7 8.4539 -1.6777 -1.2954 14 14 10.8760 -2.2508 -0.0909 15 1 10.9441 -2.4308 1.3816 16 1 10.7488 -3.5770 -0.7468 17 1 12.1135 -1.5810 -0.5655 18 6 7.9836 2.1715 -0.0161 19 6 6.7854 2.8144 -0.0122 20 6 5.5948 2.0859 -0.0058 21 7 4.2688 2.4393 0.0011 22 1 3.9136 3.3419 0.0009 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 6.8911 -1.0678 0.0010 27 1 8.5267 -2.5793 -1.6456 28 1 8.8993 2.7441 -0.0210 29 1 6.7548 3.8940 -0.0148 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396132871.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:07 Heat of formation + Delta-G solvation = -17.222100 kcal Electronic energy + Delta-G solvation = -16706.119780 eV Core-core repulsion = 13788.026916 eV Total energy + Delta-G solvation = -2918.092864 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.30731 -39.92773 -36.56252 -36.20507 -33.38886 -32.27009 -29.53791 -28.88937 -27.58900 -25.50905 -23.72077 -21.23308 -20.64484 -20.31365 -18.03274 -17.37751 -16.94178 -16.39734 -16.20064 -15.48485 -14.76384 -14.38790 -13.84466 -13.24134 -13.11977 -13.10531 -12.74608 -12.10453 -11.96297 -11.38287 -11.12751 -10.88072 -10.80526 -10.75139 -10.51860 -10.18173 -10.02780 -9.89991 -9.21592 -9.01571 -7.44721 -7.08882 -6.75507 -4.35585 1.24450 2.37139 2.63953 2.72880 3.09380 3.10352 3.17526 3.83489 3.91177 3.94687 4.55943 4.61072 5.06450 5.13899 5.40501 5.49968 5.54215 5.94347 6.19069 6.25605 6.38897 6.58929 6.75504 7.13094 7.24580 7.40277 7.55861 7.76605 7.83112 7.95757 8.12601 8.35783 8.73257 8.82560 8.83270 10.20190 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.035868 B = 0.005549 C = 0.004875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.461577 B = 5044.721277 C = 5742.526463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.328 6.328 3 C 0.565 3.435 4 O -0.517 6.517 5 C 0.191 3.809 6 N -0.428 5.428 7 C 0.072 3.928 8 C -0.140 4.140 9 C 0.091 3.909 10 C -0.461 4.461 11 H 0.080 0.920 12 C 0.075 3.925 13 N -0.787 5.787 14 Si 0.908 3.092 15 H -0.263 1.263 16 H -0.279 1.279 17 H -0.266 1.266 18 C -0.128 4.128 19 C -0.118 4.118 20 C -0.010 4.010 21 N -0.566 5.566 22 H 0.417 0.583 23 H 0.063 0.937 24 H 0.105 0.895 25 H 0.063 0.937 26 H 0.131 0.869 27 H 0.283 0.717 28 H 0.111 0.889 29 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.529 2.970 1.658 8.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.242 6.242 3 C 0.408 3.592 4 O -0.405 6.405 5 C -0.069 4.069 6 N -0.156 5.156 7 C -0.048 4.048 8 C -0.163 4.163 9 C 0.087 3.913 10 C -0.491 4.491 11 H 0.098 0.902 12 C -0.143 4.143 13 N -0.412 5.412 14 Si 0.733 3.267 15 H -0.188 1.188 16 H -0.204 1.204 17 H -0.191 1.191 18 C -0.148 4.148 19 C -0.139 4.139 20 C -0.119 4.119 21 N -0.182 5.182 22 H 0.255 0.745 23 H 0.082 0.918 24 H 0.124 0.876 25 H 0.082 0.918 26 H 0.149 0.851 27 H 0.094 0.906 28 H 0.129 0.871 29 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -8.121 2.151 1.509 8.535 hybrid contribution 0.421 0.880 0.016 0.976 sum -7.699 3.031 1.525 8.414 Atomic orbital electron populations 1.23349 0.75911 1.04002 1.02501 1.86683 1.23081 1.30941 1.83502 1.19364 0.85767 0.81749 0.72283 1.90834 1.66112 1.36090 1.47462 1.20717 0.90267 0.83153 1.12791 1.70114 1.01329 1.27964 1.16176 1.19013 0.91193 0.89660 1.04908 1.20509 0.86799 1.00109 1.08839 1.17344 0.93275 0.90038 0.90681 1.19396 0.94837 0.98407 1.36436 0.90184 1.25875 0.97618 0.98201 0.92648 1.69811 1.32781 1.16868 1.21771 0.86368 0.81512 0.78870 0.79977 1.18807 1.20363 1.19113 1.20978 0.95255 0.95211 1.03362 1.19254 0.89611 0.97231 1.07824 1.18837 0.83289 0.96184 1.13603 1.42187 1.05099 1.07855 1.63027 0.74544 0.91789 0.87650 0.91794 0.85115 0.90617 0.87105 0.88226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 10.57 101.05 1.07 1.46 15 2 O -0.33 -5.34 10.55 -40.61 -0.43 -5.76 15 3 C 0.56 10.18 7.98 34.65 0.28 10.46 15 4 O -0.52 -9.23 16.87 -19.23 -0.32 -9.56 15 5 C 0.19 3.95 7.92 -154.51 -1.22 2.73 15 6 N -0.43 -10.22 11.23 -8.82 -0.10 -10.32 15 7 C 0.07 1.81 7.19 -84.99 -0.61 1.19 15 8 C -0.14 -3.68 8.76 -38.35 -0.34 -4.02 15 9 C 0.09 2.30 5.57 -106.86 -0.59 1.71 15 10 C -0.46 -11.56 9.03 -37.79 -0.34 -11.90 15 11 H 0.08 1.88 7.91 -52.49 -0.41 1.47 15 12 C 0.08 1.83 5.12 -17.34 -0.09 1.74 15 13 N -0.79 -20.17 10.97 55.55 0.61 -19.56 15 14 Si 0.91 18.18 29.60 -169.99 -5.03 13.15 15 15 H -0.26 -5.25 7.11 56.52 0.40 -4.85 15 16 H -0.28 -5.50 7.11 56.52 0.40 -5.10 15 17 H -0.27 -5.22 7.11 56.52 0.40 -4.82 15 18 C -0.13 -2.82 9.70 -39.25 -0.38 -3.20 15 19 C -0.12 -2.42 9.99 -39.89 -0.40 -2.82 15 20 C -0.01 -0.23 7.30 -83.80 -0.61 -0.84 15 21 N -0.57 -10.93 6.22 -8.30 -0.05 -10.98 15 22 H 0.42 6.58 8.96 -40.82 -0.37 6.21 15 23 H 0.06 0.64 8.14 -51.93 -0.42 0.21 15 24 H 0.11 0.82 8.14 -51.93 -0.42 0.40 15 25 H 0.06 0.63 8.14 -51.93 -0.42 0.21 15 26 H 0.13 3.64 6.16 -52.49 -0.32 3.32 15 27 H 0.28 6.66 8.30 -40.82 -0.34 6.32 15 28 H 0.11 2.16 8.06 -52.49 -0.42 1.74 15 29 H 0.10 1.69 8.06 -52.48 -0.42 1.27 15 LS Contribution 267.74 15.07 4.03 4.03 Total: -1.00 -29.24 267.74 -6.88 -36.12 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -2.35 Total: 6.37 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: -3.24 Total: -3.49 kcal Atomic # 7 Polarization: -41.32 SS G_CDS: 0.46 Total: -40.87 kcal Atomic # 8 Polarization: -14.57 SS G_CDS: -0.75 Total: -15.32 kcal Atomic # 14 Polarization: 18.18 SS G_CDS: -5.03 Total: 13.15 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -29.24 -6.88 -36.12 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396132871.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.901 kcal (2) G-P(sol) polarization free energy of solvation -29.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds