Wall clock time and date at job start Mon Mar 30 2020 04:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34744 * 117.00397 * 2 1 4 4 O 1.21456 * 119.99606 * 0.02562 * 3 2 1 5 5 C 1.47812 * 119.99926 * 179.97438 * 3 2 1 6 6 N 1.30896 * 125.11312 * 0.02975 * 5 3 2 7 7 C 1.34601 * 109.66134 * 179.97438 * 6 5 3 8 8 C 1.39617 * 133.23951 * 179.97438 * 7 6 5 9 9 C 1.40163 * 119.40610 * 179.33288 * 8 7 6 10 10 C 1.41300 * 119.97593 * 180.18301 * 9 8 7 11 11 H 1.08001 * 119.99680 * 205.11611 * 10 9 8 12 12 C 1.39910 * 120.00026 * 25.11431 * 10 9 8 13 13 N 1.30855 * 119.99917 * 17.86964 * 12 10 9 14 14 Si 1.86800 * 119.99908 * 197.86551 * 12 10 9 15 15 H 1.48497 * 109.47067 * 60.00242 * 14 12 10 16 16 H 1.48497 * 109.47031 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47097 * 300.00028 * 14 12 10 18 18 C 1.41259 * 120.04310 * 0.55536 * 9 8 7 19 19 C 1.35974 * 120.44995 * 359.65303 * 18 9 8 20 20 C 1.39578 * 120.32319 * 359.97438 * 19 18 9 21 21 N 1.37128 * 125.10462 * 180.02562 * 5 3 2 22 22 H 0.96998 * 126.40885 * 359.97438 * 21 5 3 23 23 H 1.09004 * 109.46984 * 59.99463 * 1 2 3 24 24 H 1.08993 * 109.47411 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47157 * 300.00049 * 1 2 3 26 26 H 1.08001 * 120.29729 * 0.02562 * 8 7 6 27 27 H 0.96999 * 120.00002 * 179.97438 * 13 12 10 28 28 H 1.08001 * 119.77802 * 179.62080 * 18 9 8 29 29 H 1.08004 * 119.84061 * 180.02562 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2005 0.0000 4 8 1.4023 2.2192 0.0005 5 6 3.5399 1.2778 0.0006 6 7 4.3477 0.2478 0.0005 7 6 5.6246 0.6737 0.0006 8 6 6.8537 0.0116 0.0010 9 6 8.0387 0.7600 -0.0133 10 6 9.2892 0.1022 -0.0169 11 1 10.1641 0.6035 0.3700 12 6 9.3940 -1.1985 -0.5216 13 7 8.4539 -1.6777 -1.2954 14 14 10.8760 -2.2508 -0.0909 15 1 10.9441 -2.4308 1.3816 16 1 10.7488 -3.5770 -0.7468 17 1 12.1135 -1.5810 -0.5655 18 6 7.9836 2.1715 -0.0161 19 6 6.7854 2.8144 -0.0122 20 6 5.5948 2.0859 -0.0058 21 7 4.2688 2.4393 0.0011 22 1 3.9136 3.3419 0.0009 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 6.8911 -1.0678 0.0010 27 1 8.5267 -2.5793 -1.6456 28 1 8.8993 2.7441 -0.0210 29 1 6.7548 3.8940 -0.0148 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396132871.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:06 Heat of formation + Delta-G solvation = -35.374325 kcal Electronic energy + Delta-G solvation = -16706.906920 eV Core-core repulsion = 13788.026916 eV Total energy + Delta-G solvation = -2918.880003 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.97254 -41.30855 -38.18178 -37.65930 -35.18782 -33.99109 -31.22582 -30.56320 -28.82186 -27.20324 -25.27390 -22.97620 -22.32745 -21.86775 -19.66014 -19.02649 -18.40008 -17.83126 -17.70165 -17.19840 -16.40033 -15.96134 -15.32831 -14.92554 -14.58978 -14.46397 -14.31727 -13.70512 -13.13468 -13.08220 -12.76280 -12.50865 -12.30481 -12.14869 -11.93156 -11.91077 -11.76281 -11.62826 -10.97999 -10.79672 -9.23634 -8.86851 -8.57099 -6.25866 -0.33498 0.94771 1.00158 1.04136 1.44559 1.54846 1.58110 2.17488 2.26298 2.42302 2.76002 3.17003 3.67380 3.87890 4.23758 4.33114 4.38017 4.53210 4.65540 4.69262 4.86441 4.99094 5.02585 5.29712 5.45785 5.69225 5.90138 5.98047 6.08601 6.29018 6.53455 6.55882 6.91619 7.00197 7.02260 8.40319 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.035868 B = 0.005549 C = 0.004875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.461577 B = 5044.721277 C = 5742.526463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.342 6.342 3 C 0.572 3.428 4 O -0.513 6.513 5 C 0.198 3.802 6 N -0.469 5.469 7 C 0.047 3.953 8 C -0.180 4.180 9 C 0.070 3.930 10 C -0.489 4.489 11 H 0.091 0.909 12 C 0.031 3.969 13 N -0.825 5.825 14 Si 0.981 3.019 15 H -0.261 1.261 16 H -0.276 1.276 17 H -0.254 1.254 18 C -0.137 4.137 19 C -0.100 4.100 20 C -0.015 4.015 21 N -0.546 5.546 22 H 0.436 0.564 23 H 0.073 0.927 24 H 0.137 0.863 25 H 0.074 0.926 26 H 0.099 0.901 27 H 0.286 0.714 28 H 0.138 0.862 29 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.007 4.414 1.939 9.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.256 6.256 3 C 0.415 3.585 4 O -0.401 6.401 5 C -0.064 4.064 6 N -0.197 5.197 7 C -0.073 4.073 8 C -0.203 4.203 9 C 0.066 3.934 10 C -0.518 4.518 11 H 0.109 0.891 12 C -0.184 4.184 13 N -0.451 5.451 14 Si 0.802 3.198 15 H -0.186 1.186 16 H -0.201 1.201 17 H -0.178 1.178 18 C -0.157 4.157 19 C -0.121 4.121 20 C -0.125 4.125 21 N -0.162 5.162 22 H 0.278 0.722 23 H 0.092 0.908 24 H 0.155 0.845 25 H 0.093 0.907 26 H 0.117 0.883 27 H 0.096 0.904 28 H 0.156 0.844 29 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -8.624 3.637 1.790 9.529 hybrid contribution 0.342 0.492 -0.075 0.604 sum -8.282 4.129 1.715 9.412 Atomic orbital electron populations 1.23819 0.72667 1.06539 1.03536 1.86668 1.26195 1.29890 1.82810 1.18979 0.84630 0.82450 0.72480 1.90832 1.65727 1.36151 1.47424 1.21280 0.91623 0.82881 1.10579 1.70056 1.01438 1.29666 1.18537 1.19173 0.91252 0.91432 1.05471 1.20306 0.88335 0.98887 1.12819 1.17700 0.93068 0.91886 0.90745 1.19768 0.95297 0.99545 1.37237 0.89130 1.26786 1.00464 0.99171 0.91937 1.69922 1.34891 1.17327 1.22952 0.85265 0.78009 0.76996 0.79530 1.18590 1.20054 1.17795 1.21254 0.97156 0.94008 1.03255 1.19674 0.88180 0.99411 1.04844 1.18995 0.84783 0.95204 1.13521 1.42108 1.04049 1.08637 1.61452 0.72222 0.90802 0.84514 0.90682 0.88289 0.90392 0.84431 0.83541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 10.57 113.37 1.20 1.70 15 2 O -0.34 -10.62 10.55 -56.54 -0.60 -11.21 15 3 C 0.57 19.73 7.98 70.36 0.56 20.29 15 4 O -0.51 -17.07 16.87 19.98 0.34 -16.73 15 5 C 0.20 8.07 7.92 136.46 1.08 9.15 15 6 N -0.47 -22.89 11.23 -181.81 -2.04 -24.93 15 7 C 0.05 2.40 7.19 39.79 0.29 2.68 15 8 C -0.18 -9.99 8.76 23.07 0.20 -9.78 15 9 C 0.07 3.65 5.57 -21.32 -0.12 3.53 15 10 C -0.49 -25.06 9.03 23.43 0.21 -24.84 15 11 H 0.09 4.27 7.91 -2.91 -0.02 4.25 15 12 C 0.03 1.57 5.12 85.24 0.44 2.01 15 13 N -0.82 -44.25 10.97 21.82 0.24 -44.01 15 14 Si 0.98 37.77 29.60 68.60 2.03 39.80 15 15 H -0.26 -9.89 7.11 99.48 0.71 -9.18 15 16 H -0.28 -10.35 7.11 99.48 0.71 -9.64 15 17 H -0.25 -9.20 7.11 99.48 0.71 -8.50 15 18 C -0.14 -5.89 9.70 22.49 0.22 -5.68 15 19 C -0.10 -3.89 9.99 22.07 0.22 -3.67 15 20 C -0.02 -0.65 7.30 39.36 0.29 -0.37 15 21 N -0.55 -20.10 6.22 -180.16 -1.12 -21.22 15 22 H 0.44 12.47 8.96 -92.71 -0.83 11.64 15 23 H 0.07 1.27 8.14 -2.39 -0.02 1.25 15 24 H 0.14 1.71 8.14 -2.39 -0.02 1.69 15 25 H 0.07 1.27 8.14 -2.39 -0.02 1.25 15 26 H 0.10 5.96 6.16 -2.91 -0.02 5.94 15 27 H 0.29 14.08 8.30 -92.71 -0.77 13.31 15 28 H 0.14 5.07 8.06 -2.91 -0.02 5.05 15 29 H 0.15 4.28 8.06 -2.91 -0.02 4.25 15 Total: -1.00 -65.76 267.74 3.81 -61.95 By element: Atomic # 1 Polarization: 20.95 SS G_CDS: 0.37 Total: 21.33 kcal Atomic # 6 Polarization: -9.56 SS G_CDS: 4.58 Total: -4.97 kcal Atomic # 7 Polarization: -87.24 SS G_CDS: -2.92 Total: -90.16 kcal Atomic # 8 Polarization: -27.69 SS G_CDS: -0.26 Total: -27.95 kcal Atomic # 14 Polarization: 37.77 SS G_CDS: 2.03 Total: 39.80 kcal Total: -65.76 3.81 -61.95 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396132871.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.575 kcal (2) G-P(sol) polarization free energy of solvation -65.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds