Wall clock time and date at job start Mon Mar 30 2020 03:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30250 * 125.62069 * 2 1 4 4 C 1.34485 * 108.70025 * 179.97438 * 3 2 1 5 5 C 1.34325 * 107.66767 * 0.02562 * 4 3 2 6 6 C 1.50702 * 126.44374 * 179.97438 * 5 4 3 7 7 N 1.46504 * 109.47075 * 90.02253 * 6 5 4 8 8 S 1.65594 * 120.00174 * 165.00353 * 7 6 5 9 9 O 1.42100 * 106.40470 * 178.53785 * 8 7 6 10 10 O 1.42102 * 106.40315 * 311.45732 * 8 7 6 11 11 C 1.76196 * 107.22173 * 64.99632 * 8 7 6 12 12 H 1.08009 * 120.00151 * 0.02562 * 11 8 7 13 13 C 1.37876 * 120.00497 * 179.97438 * 11 8 7 14 14 N 1.31520 * 120.00251 * 179.97438 * 13 11 8 15 15 Si 1.86798 * 119.99635 * 0.02562 * 13 11 8 16 16 H 1.48502 * 109.47247 * 90.00042 * 15 13 11 17 17 H 1.48506 * 109.47045 * 209.99695 * 15 13 11 18 18 H 1.48497 * 109.47294 * 329.99805 * 15 13 11 19 19 O 1.33974 * 125.61592 * 179.97438 * 2 1 3 20 20 H 1.08994 * 109.47516 * 270.02701 * 1 2 3 21 21 H 1.09002 * 109.47000 * 30.03000 * 1 2 3 22 22 H 1.09005 * 109.47091 * 150.02246 * 1 2 3 23 23 H 1.08000 * 126.16216 * 180.02562 * 4 3 2 24 24 H 1.08999 * 109.46996 * 210.02003 * 6 5 4 25 25 H 1.09001 * 109.46826 * 330.02641 * 6 5 4 26 26 H 0.97001 * 119.99640 * 344.99933 * 7 6 5 27 27 H 0.96997 * 119.99653 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5522 0.6674 0.0006 5 6 3.5697 -0.6758 0.0004 6 6 4.7936 -1.5551 0.0003 7 7 5.1898 -1.8407 1.3815 8 16 6.2580 -3.0653 1.7001 9 8 6.4614 -3.0646 3.1065 10 8 5.7929 -4.2003 0.9827 11 6 7.7992 -2.6152 0.9744 12 1 7.8936 -1.6789 0.4444 13 6 8.8850 -3.4578 1.0838 14 7 10.0352 -3.1221 0.5416 15 14 8.7220 -5.0770 2.0009 16 1 8.3049 -6.1424 1.0542 17 1 10.0294 -5.4368 2.6063 18 1 7.7021 -4.9390 3.0714 19 8 2.2872 -1.0891 0.0005 20 1 -0.3634 0.0005 1.0276 21 1 -0.3633 0.8897 -0.5143 22 1 -0.3633 -0.8902 -0.5135 23 1 4.4157 1.3161 0.0011 24 1 4.5695 -2.4896 -0.5140 25 1 5.6081 -1.0440 -0.5130 26 1 4.8265 -1.3124 2.1093 27 1 10.7992 -3.7148 0.6190 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398029621.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:15 Heat of formation + Delta-G solvation = -58.655822 kcal Electronic energy + Delta-G solvation = -15673.495640 eV Core-core repulsion = 12753.216932 eV Total energy + Delta-G solvation = -2920.278708 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 246.051 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.31646 -35.78846 -35.17170 -34.74289 -34.50612 -33.08132 -31.92990 -28.47596 -26.47115 -24.74955 -22.25237 -21.05669 -19.27157 -17.64539 -17.23039 -16.83562 -16.47733 -15.72904 -15.00730 -14.47492 -14.07297 -13.82312 -13.46665 -13.31941 -13.20929 -12.93000 -12.79578 -12.40863 -11.61746 -11.41520 -11.27545 -10.89934 -10.70233 -10.56529 -10.54098 -9.93060 -9.39105 -9.25483 -8.78079 -8.70970 -6.85163 -5.40580 1.32344 2.01461 2.64758 2.67842 3.05040 3.15268 3.24372 3.91883 4.00237 4.26999 4.54573 4.73098 5.01695 5.10633 5.16386 5.25045 5.35086 5.50040 5.62959 5.88003 5.97698 6.11232 6.32264 6.37519 7.41679 7.54911 7.70306 8.13869 8.65252 10.26864 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.052884 B = 0.006024 C = 0.005732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.334050 B = 4646.852442 C = 4883.741949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.182 3.818 3 N -0.486 5.486 4 C -0.026 4.026 5 C -0.046 4.046 6 C 0.211 3.789 7 N -1.123 6.123 8 S 2.675 3.325 9 O -1.003 7.003 10 O -1.009 7.009 11 C -1.016 5.016 12 H 0.123 0.877 13 C 0.153 3.847 14 N -0.821 5.821 15 Si 0.802 3.198 16 H -0.246 1.246 17 H -0.255 1.255 18 H -0.220 1.220 19 O -0.196 6.196 20 H 0.091 0.909 21 H 0.099 0.901 22 H 0.088 0.912 23 H 0.188 0.812 24 H 0.097 0.903 25 H 0.103 0.897 26 H 0.409 0.591 27 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.583 5.116 -2.053 14.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.025 4.025 3 N -0.217 5.217 4 C -0.166 4.166 5 C -0.101 4.101 6 C 0.084 3.916 7 N -0.879 5.879 8 S 2.777 3.223 9 O -0.994 6.994 10 O -0.998 6.998 11 C -1.151 5.151 12 H 0.141 0.859 13 C -0.067 4.067 14 N -0.450 5.450 15 Si 0.622 3.378 16 H -0.170 1.170 17 H -0.179 1.179 18 H -0.142 1.142 19 O -0.082 6.082 20 H 0.110 0.890 21 H 0.118 0.882 22 H 0.106 0.894 23 H 0.205 0.795 24 H 0.115 0.885 25 H 0.121 0.879 26 H 0.240 0.760 27 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -13.800 4.745 -1.780 14.701 hybrid contribution 0.826 -0.582 0.262 1.044 sum -12.974 4.163 -1.518 13.710 Atomic orbital electron populations 1.20234 0.81454 1.04983 1.04619 1.26324 0.96543 0.78927 1.00663 1.70453 1.02146 1.30304 1.18763 1.23187 0.95104 0.93008 1.05305 1.23641 0.83523 0.95500 1.07397 1.19509 0.88608 0.98700 0.84796 1.55681 1.64400 1.55837 1.11971 1.01425 0.75165 0.71883 0.73831 1.93488 1.86647 1.86206 1.33038 1.93414 1.82527 1.49305 1.74589 1.30407 1.14821 1.17657 1.52181 0.85917 1.24420 0.93953 0.97093 0.91190 1.69982 1.01172 1.36746 1.37116 0.87848 0.82407 0.84505 0.83003 1.16953 1.17866 1.14226 1.84431 1.16754 1.37581 1.69451 0.89005 0.88234 0.89364 0.79473 0.88493 0.87882 0.75962 0.90808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.41 10.51 36.00 0.38 -0.04 15 2 C 0.18 2.34 8.34 -12.95 -0.11 2.24 15 3 N -0.49 -7.01 11.29 -11.10 -0.13 -7.13 15 4 C -0.03 -0.37 11.80 -17.77 -0.21 -0.58 15 5 C -0.05 -0.69 6.78 -35.69 -0.24 -0.93 15 6 C 0.21 3.39 6.77 -5.19 -0.04 3.36 15 7 N -1.12 -20.83 5.99 -11.65 -0.07 -20.90 15 8 S 2.68 64.60 4.24 -107.50 -0.46 64.15 15 9 O -1.00 -26.38 16.02 -57.17 -0.92 -27.30 15 10 O -1.01 -26.12 16.30 -57.17 -0.93 -27.05 15 11 C -1.02 -27.28 10.26 30.60 0.31 -26.96 15 12 H 0.12 3.26 8.06 -52.48 -0.42 2.84 15 13 C 0.15 4.30 5.47 -17.82 -0.10 4.21 15 14 N -0.82 -23.22 13.96 55.43 0.77 -22.44 15 15 Si 0.80 20.23 26.54 -169.99 -4.51 15.72 15 16 H -0.25 -6.05 7.11 56.52 0.40 -5.65 15 17 H -0.25 -5.91 7.11 56.52 0.40 -5.51 15 18 H -0.22 -5.66 5.61 56.52 0.32 -5.34 15 19 O -0.20 -2.92 10.78 5.34 0.06 -2.86 15 20 H 0.09 0.56 8.14 -51.93 -0.42 0.14 15 21 H 0.10 0.61 8.14 -51.93 -0.42 0.18 15 22 H 0.09 0.52 8.14 -51.93 -0.42 0.10 15 23 H 0.19 2.18 8.06 -52.49 -0.42 1.75 15 24 H 0.10 1.58 7.75 -51.93 -0.40 1.18 15 25 H 0.10 1.48 8.14 -51.93 -0.42 1.05 15 26 H 0.41 6.73 8.64 -34.47 -0.30 6.43 15 27 H 0.28 7.22 8.31 -40.82 -0.34 6.88 15 LS Contribution 258.26 15.07 3.89 3.89 Total: -1.00 -33.84 258.26 -4.74 -38.58 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -2.46 Total: 4.06 kcal Atomic # 6 Polarization: -18.72 SS G_CDS: 0.00 Total: -18.72 kcal Atomic # 7 Polarization: -51.05 SS G_CDS: 0.58 Total: -50.47 kcal Atomic # 8 Polarization: -55.42 SS G_CDS: -1.79 Total: -57.21 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -4.51 Total: 15.72 kcal Atomic # 16 Polarization: 64.60 SS G_CDS: -0.46 Total: 64.15 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -33.84 -4.74 -38.58 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398029621.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.074 kcal (2) G-P(sol) polarization free energy of solvation -33.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds