Wall clock time and date at job start Mon Mar 30 2020 03:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30250 * 125.62069 * 2 1 4 4 C 1.34485 * 108.70025 * 179.97438 * 3 2 1 5 5 C 1.34325 * 107.66767 * 0.02562 * 4 3 2 6 6 C 1.50702 * 126.44374 * 179.97438 * 5 4 3 7 7 N 1.46504 * 109.47075 * 90.02253 * 6 5 4 8 8 S 1.65594 * 120.00174 * 165.00353 * 7 6 5 9 9 O 1.42100 * 106.40470 * 178.53785 * 8 7 6 10 10 O 1.42102 * 106.40315 * 311.45732 * 8 7 6 11 11 C 1.76196 * 107.22173 * 64.99632 * 8 7 6 12 12 H 1.08009 * 120.00151 * 0.02562 * 11 8 7 13 13 C 1.37876 * 120.00497 * 179.97438 * 11 8 7 14 14 N 1.31520 * 120.00251 * 179.97438 * 13 11 8 15 15 Si 1.86798 * 119.99635 * 0.02562 * 13 11 8 16 16 H 1.48502 * 109.47247 * 90.00042 * 15 13 11 17 17 H 1.48506 * 109.47045 * 209.99695 * 15 13 11 18 18 H 1.48497 * 109.47294 * 329.99805 * 15 13 11 19 19 O 1.33974 * 125.61592 * 179.97438 * 2 1 3 20 20 H 1.08994 * 109.47516 * 270.02701 * 1 2 3 21 21 H 1.09002 * 109.47000 * 30.03000 * 1 2 3 22 22 H 1.09005 * 109.47091 * 150.02246 * 1 2 3 23 23 H 1.08000 * 126.16216 * 180.02562 * 4 3 2 24 24 H 1.08999 * 109.46996 * 210.02003 * 6 5 4 25 25 H 1.09001 * 109.46826 * 330.02641 * 6 5 4 26 26 H 0.97001 * 119.99640 * 344.99933 * 7 6 5 27 27 H 0.96997 * 119.99653 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5522 0.6674 0.0006 5 6 3.5697 -0.6758 0.0004 6 6 4.7936 -1.5551 0.0003 7 7 5.1898 -1.8407 1.3815 8 16 6.2580 -3.0653 1.7001 9 8 6.4614 -3.0646 3.1065 10 8 5.7929 -4.2003 0.9827 11 6 7.7992 -2.6152 0.9744 12 1 7.8936 -1.6789 0.4444 13 6 8.8850 -3.4578 1.0838 14 7 10.0352 -3.1221 0.5416 15 14 8.7220 -5.0770 2.0009 16 1 8.3049 -6.1424 1.0542 17 1 10.0294 -5.4368 2.6063 18 1 7.7021 -4.9390 3.0714 19 8 2.2872 -1.0891 0.0005 20 1 -0.3634 0.0005 1.0276 21 1 -0.3633 0.8897 -0.5143 22 1 -0.3633 -0.8902 -0.5135 23 1 4.4157 1.3161 0.0011 24 1 4.5695 -2.4896 -0.5140 25 1 5.6081 -1.0440 -0.5130 26 1 4.8265 -1.3124 2.1093 27 1 10.7992 -3.7148 0.6190 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398029621.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:15 Heat of formation + Delta-G solvation = -88.585744 kcal Electronic energy + Delta-G solvation = -15674.793499 eV Core-core repulsion = 12753.216932 eV Total energy + Delta-G solvation = -2921.576567 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 246.051 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -44.37655 -37.75456 -36.62201 -36.52466 -35.81230 -35.17830 -32.86619 -29.54872 -28.55578 -25.91271 -23.32285 -22.12083 -21.16878 -19.54023 -18.80903 -18.25480 -17.75149 -17.23092 -16.78744 -15.93130 -15.52160 -15.35249 -15.03592 -14.95091 -14.42589 -14.00379 -13.78689 -13.50662 -13.40165 -13.14964 -12.90075 -12.73550 -12.58415 -12.33552 -11.87926 -11.63443 -11.32756 -11.26015 -10.44009 -9.81683 -8.95630 -7.52111 -0.05904 0.46084 1.07204 1.16214 1.23561 1.61403 1.63668 1.90459 2.43030 2.56301 3.11884 3.29114 3.63485 3.97544 4.10912 4.21461 4.35631 4.64261 4.65628 4.68482 4.78428 4.98446 5.03830 5.37778 5.38847 6.02074 6.11409 6.54939 6.66223 8.21361 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.052884 B = 0.006024 C = 0.005732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.334050 B = 4646.852442 C = 4883.741949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.192 3.808 3 N -0.513 5.513 4 C -0.019 4.019 5 C -0.068 4.068 6 C 0.206 3.794 7 N -1.110 6.110 8 S 2.700 3.300 9 O -1.026 7.026 10 O -1.027 7.027 11 C -1.034 5.034 12 H 0.115 0.885 13 C 0.110 3.890 14 N -0.851 5.851 15 Si 0.822 3.178 16 H -0.239 1.239 17 H -0.222 1.222 18 H -0.230 1.230 19 O -0.211 6.211 20 H 0.110 0.890 21 H 0.116 0.884 22 H 0.106 0.894 23 H 0.207 0.793 24 H 0.092 0.908 25 H 0.119 0.881 26 H 0.420 0.580 27 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.956 5.378 -1.971 16.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.015 4.015 3 N -0.243 5.243 4 C -0.158 4.158 5 C -0.122 4.122 6 C 0.081 3.919 7 N -0.870 5.870 8 S 2.800 3.200 9 O -1.016 7.016 10 O -1.016 7.016 11 C -1.167 5.167 12 H 0.134 0.866 13 C -0.107 4.107 14 N -0.481 5.481 15 Si 0.640 3.360 16 H -0.162 1.162 17 H -0.145 1.145 18 H -0.152 1.152 19 O -0.099 6.099 20 H 0.128 0.872 21 H 0.134 0.866 22 H 0.125 0.875 23 H 0.223 0.777 24 H 0.110 0.890 25 H 0.137 0.863 26 H 0.254 0.746 27 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -15.142 5.014 -1.700 16.041 hybrid contribution 1.113 -0.547 0.188 1.254 sum -14.030 4.467 -1.511 14.801 Atomic orbital electron populations 1.20590 0.77853 1.06694 1.06282 1.27486 0.98248 0.78031 0.97732 1.70523 1.02383 1.30997 1.20428 1.23544 0.95818 0.92912 1.03513 1.23325 0.83377 0.95484 1.10043 1.19637 0.90057 0.99148 0.83099 1.55192 1.63136 1.54930 1.13783 1.00485 0.74568 0.72173 0.72736 1.93450 1.87171 1.86906 1.34091 1.93386 1.82570 1.50806 1.74884 1.30885 1.16414 1.17386 1.52003 0.86646 1.25111 0.94168 0.99453 0.91954 1.70003 1.01876 1.38077 1.38159 0.87525 0.83849 0.82308 0.82340 1.16222 1.14457 1.15219 1.84428 1.16917 1.38587 1.69954 0.87156 0.86585 0.87543 0.77662 0.88972 0.86290 0.74565 0.89812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.68 10.51 71.24 0.75 0.07 15 2 C 0.19 4.53 8.34 88.34 0.74 5.26 15 3 N -0.51 -13.84 11.29 -303.83 -3.43 -17.27 15 4 C -0.02 -0.49 11.80 83.39 0.98 0.49 15 5 C -0.07 -1.97 6.78 24.79 0.17 -1.80 15 6 C 0.21 6.47 6.77 85.63 0.58 7.05 15 7 N -1.11 -40.19 5.99 -190.78 -1.14 -41.33 15 8 S 2.70 128.93 4.24 -56.49 -0.24 128.69 15 9 O -1.03 -53.31 16.02 -128.00 -2.05 -55.36 15 10 O -1.03 -52.57 16.30 -128.00 -2.09 -54.66 15 11 C -1.03 -55.51 10.26 67.73 0.69 -54.82 15 12 H 0.12 6.18 8.06 -2.91 -0.02 6.16 15 13 C 0.11 6.16 5.47 84.65 0.46 6.62 15 14 N -0.85 -48.01 13.96 21.45 0.30 -47.71 15 15 Si 0.82 40.20 26.54 68.60 1.82 42.02 15 16 H -0.24 -11.33 7.11 99.48 0.71 -10.62 15 17 H -0.22 -9.64 7.11 99.48 0.71 -8.93 15 18 H -0.23 -11.56 5.61 99.48 0.56 -11.00 15 19 O -0.21 -6.00 10.78 -3.79 -0.04 -6.04 15 20 H 0.11 0.97 8.14 -2.39 -0.02 0.95 15 21 H 0.12 1.03 8.14 -2.39 -0.02 1.01 15 22 H 0.11 0.91 8.14 -2.38 -0.02 0.89 15 23 H 0.21 4.42 8.06 -2.91 -0.02 4.39 15 24 H 0.09 2.97 7.75 -2.39 -0.02 2.95 15 25 H 0.12 3.31 8.14 -2.39 -0.02 3.29 15 26 H 0.42 13.35 8.64 -96.75 -0.84 12.51 15 27 H 0.29 14.84 8.31 -92.71 -0.77 14.07 15 Total: -1.00 -70.83 258.26 -2.27 -73.11 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: 0.22 Total: 15.68 kcal Atomic # 6 Polarization: -41.50 SS G_CDS: 4.38 Total: -37.12 kcal Atomic # 7 Polarization: -102.04 SS G_CDS: -4.27 Total: -106.31 kcal Atomic # 8 Polarization: -111.89 SS G_CDS: -4.18 Total: -116.07 kcal Atomic # 14 Polarization: 40.20 SS G_CDS: 1.82 Total: 42.02 kcal Atomic # 16 Polarization: 128.93 SS G_CDS: -0.24 Total: 128.69 kcal Total: -70.83 -2.27 -73.11 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398029621.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.477 kcal (2) G-P(sol) polarization free energy of solvation -70.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds