Wall clock time and date at job start Mon Mar 30 2020 03:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.34747 * 126.44698 * 2 1 4 4 C 1.33967 * 107.76135 * 179.97438 * 3 2 1 5 5 N 1.30260 * 108.75886 * 0.02562 * 4 3 2 6 6 C 1.34330 * 126.44088 * 179.97438 * 2 1 3 7 7 C 1.50696 * 126.17007 * 0.02562 * 6 2 1 8 8 N 1.46501 * 109.46911 * 270.02664 * 7 6 2 9 9 S 1.65601 * 120.00182 * 164.99946 * 8 7 6 10 10 O 1.42104 * 106.40536 * 178.53926 * 9 8 7 11 11 O 1.42106 * 106.40091 * 311.45769 * 9 8 7 12 12 C 1.76201 * 107.21931 * 64.99656 * 9 8 7 13 13 H 1.07995 * 119.99927 * 0.02562 * 12 9 8 14 14 C 1.37875 * 119.99825 * 180.02562 * 12 9 8 15 15 N 1.31519 * 120.00526 * 0.02562 * 14 12 9 16 16 Si 1.86800 * 119.99989 * 180.02562 * 14 12 9 17 17 H 1.48501 * 109.46812 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47379 * 119.99804 * 16 14 12 19 19 H 1.48501 * 109.47245 * 240.00080 * 16 14 12 20 20 H 1.08999 * 109.46700 * 270.01320 * 1 2 3 21 21 H 1.08990 * 109.47109 * 30.01391 * 1 2 3 22 22 H 1.09001 * 109.47371 * 150.01905 * 1 2 3 23 23 H 1.07997 * 125.62305 * 180.02562 * 4 3 2 24 24 H 1.09001 * 109.47525 * 30.02021 * 7 6 2 25 25 H 1.08999 * 109.47609 * 150.02734 * 7 6 2 26 26 H 0.96997 * 120.00483 * 344.99550 * 8 7 6 27 27 H 0.96994 * 119.99943 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3075 1.0839 0.0000 4 6 3.5766 0.6547 0.0006 5 7 3.5783 -0.6479 0.0004 6 6 2.3050 -1.0806 0.0005 7 6 1.8546 -2.5187 0.0006 8 7 1.7075 -2.9843 1.3819 9 16 0.8803 -4.3830 1.7006 10 8 0.9444 -4.5755 3.1071 11 8 -0.3432 -4.2980 0.9828 12 6 1.7918 -5.7050 0.9754 13 1 2.7104 -5.5006 0.4456 14 6 1.3322 -7.0003 1.0841 15 7 0.2132 -7.2492 1.7288 16 14 2.2989 -8.4020 0.3158 17 1 3.5119 -7.8609 -0.3483 18 1 2.7004 -9.3643 1.3731 19 1 1.4526 -9.0948 -0.6887 20 1 -0.3633 0.0002 1.0277 21 1 -0.3633 0.8898 -0.5140 22 1 -0.3634 -0.8901 -0.5135 23 1 4.4537 1.2848 0.0011 24 1 0.8970 -2.5997 -0.5139 25 1 2.5957 -3.1317 -0.5124 26 1 2.0948 -2.4733 2.1097 27 1 -0.1099 -8.1605 1.8056 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398350407.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:12 Heat of formation + Delta-G solvation = -73.404676 kcal Electronic energy + Delta-G solvation = -15847.708034 eV Core-core repulsion = 12926.789768 eV Total energy + Delta-G solvation = -2920.918266 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 246.051 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.30705 -35.84397 -35.14949 -33.95468 -33.79379 -33.05211 -32.02478 -27.49174 -26.11021 -25.18311 -22.16397 -20.76284 -19.01377 -17.53864 -17.18889 -16.63124 -16.06975 -15.28457 -15.04945 -14.73860 -14.13729 -13.83965 -13.29683 -13.06574 -12.80046 -12.52760 -12.16355 -11.97006 -11.30910 -11.21139 -11.14086 -10.55923 -10.53342 -10.36423 -10.28849 -10.19722 -9.23662 -9.02411 -8.65867 -8.48440 -6.68343 -5.29755 1.45399 2.27851 2.76827 2.79915 3.07962 3.16680 3.24895 4.09507 4.18068 4.66223 4.79607 4.86996 4.92404 5.19873 5.45549 5.55325 5.76649 5.87353 5.96530 6.05464 6.17672 6.35358 6.48075 6.82963 7.34734 7.76028 7.88595 8.01605 8.91688 10.25812 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.037680 B = 0.006697 C = 0.006168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.930876 B = 4180.153247 C = 4538.148471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.027 4.027 3 O -0.208 6.208 4 C 0.157 3.843 5 N -0.472 5.472 6 C -0.020 4.020 7 C 0.209 3.791 8 N -1.132 6.132 9 S 2.716 3.284 10 O -1.005 7.005 11 O -1.006 7.006 12 C -1.020 5.020 13 H 0.104 0.896 14 C 0.133 3.867 15 N -0.846 5.846 16 Si 0.921 3.079 17 H -0.262 1.262 18 H -0.271 1.271 19 H -0.271 1.271 20 H 0.088 0.912 21 H 0.077 0.923 22 H 0.100 0.900 23 H 0.248 0.752 24 H 0.091 0.909 25 H 0.078 0.922 26 H 0.403 0.597 27 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.530 12.991 -4.929 14.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.082 4.082 3 O -0.095 6.095 4 C -0.070 4.070 5 N -0.200 5.200 6 C -0.140 4.140 7 C 0.082 3.918 8 N -0.887 5.887 9 S 2.815 3.185 10 O -0.995 6.995 11 O -0.996 6.996 12 C -1.153 5.153 13 H 0.122 0.878 14 C -0.085 4.085 15 N -0.476 5.476 16 Si 0.745 3.255 17 H -0.186 1.186 18 H -0.196 1.196 19 H -0.196 1.196 20 H 0.106 0.894 21 H 0.096 0.904 22 H 0.119 0.881 23 H 0.264 0.736 24 H 0.109 0.891 25 H 0.096 0.904 26 H 0.234 0.766 27 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.004 12.393 -4.543 13.537 hybrid contribution 0.892 -0.245 -0.369 0.996 sum 3.896 12.147 -4.911 13.670 Atomic orbital electron populations 1.20397 0.83593 1.04611 1.04411 1.23368 0.95102 0.84013 1.05675 1.84413 1.18448 1.36556 1.70078 1.27964 0.85614 0.91241 1.02168 1.70362 1.22989 1.10103 1.16556 1.21630 0.87967 0.97343 1.07098 1.19256 1.01291 0.86582 0.84654 1.56026 1.76153 1.44686 1.11793 1.00405 0.73152 0.71664 0.73245 1.93379 1.87530 1.85268 1.33367 1.93350 1.44804 1.86682 1.74795 1.30584 1.23859 1.08984 1.51913 0.87780 1.24748 0.93445 0.99402 0.90906 1.69903 1.18846 1.23957 1.34872 0.86128 0.80227 0.79880 0.79308 1.18553 1.19650 1.19628 0.89382 0.90428 0.88115 0.73607 0.89132 0.90389 0.76633 0.89959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.82 10.22 36.01 0.37 -0.45 15 2 C -0.03 -0.38 7.39 -35.69 -0.26 -0.64 15 3 O -0.21 -2.62 10.77 5.38 0.06 -2.56 15 4 C 0.16 1.80 13.23 52.10 0.69 2.49 15 5 N -0.47 -7.26 11.30 -11.18 -0.13 -7.38 15 6 C -0.02 -0.32 6.50 -82.81 -0.54 -0.85 15 7 C 0.21 3.75 6.55 -5.19 -0.03 3.71 15 8 N -1.13 -23.01 5.99 -11.66 -0.07 -23.08 15 9 S 2.72 71.43 5.02 -107.50 -0.54 70.89 15 10 O -1.01 -29.52 18.02 -57.17 -1.03 -30.55 15 11 O -1.01 -28.43 17.49 -57.17 -1.00 -29.43 15 12 C -1.02 -28.12 9.72 30.60 0.30 -27.82 15 13 H 0.10 2.65 7.81 -52.49 -0.41 2.24 15 14 C 0.13 3.71 5.46 -17.82 -0.10 3.61 15 15 N -0.85 -24.83 13.19 55.43 0.73 -24.09 15 16 Si 0.92 20.67 29.54 -169.99 -5.02 15.65 15 17 H -0.26 -5.69 7.11 56.52 0.40 -5.29 15 18 H -0.27 -5.90 7.11 56.52 0.40 -5.50 15 19 H -0.27 -5.84 7.11 56.52 0.40 -5.44 15 20 H 0.09 0.95 8.14 -51.93 -0.42 0.53 15 21 H 0.08 0.68 8.14 -51.93 -0.42 0.25 15 22 H 0.10 1.14 7.17 -51.93 -0.37 0.77 15 23 H 0.25 1.46 8.06 -52.49 -0.42 1.04 15 24 H 0.09 1.54 6.78 -51.93 -0.35 1.19 15 25 H 0.08 1.38 8.14 -51.93 -0.42 0.96 15 26 H 0.40 7.53 8.64 -34.46 -0.30 7.23 15 27 H 0.29 7.62 8.31 -40.82 -0.34 7.28 15 LS Contribution 262.90 15.07 3.96 3.96 Total: -1.00 -36.43 262.90 -4.87 -41.30 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -2.26 Total: 5.26 kcal Atomic # 6 Polarization: -20.38 SS G_CDS: 0.42 Total: -19.96 kcal Atomic # 7 Polarization: -55.10 SS G_CDS: 0.54 Total: -54.56 kcal Atomic # 8 Polarization: -60.57 SS G_CDS: -1.97 Total: -62.55 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Atomic # 16 Polarization: 71.43 SS G_CDS: -0.54 Total: 70.89 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -36.43 -4.87 -41.30 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398350407.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.103 kcal (2) G-P(sol) polarization free energy of solvation -36.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds