Wall clock time and date at job start Mon Mar 30 2020 03:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.34747 * 126.44698 * 2 1 4 4 C 1.33967 * 107.76135 * 179.97438 * 3 2 1 5 5 N 1.30260 * 108.75886 * 0.02562 * 4 3 2 6 6 C 1.34330 * 126.44088 * 179.97438 * 2 1 3 7 7 C 1.50696 * 126.17007 * 0.02562 * 6 2 1 8 8 N 1.46501 * 109.46911 * 270.02664 * 7 6 2 9 9 S 1.65601 * 120.00182 * 164.99946 * 8 7 6 10 10 O 1.42104 * 106.40536 * 178.53926 * 9 8 7 11 11 O 1.42106 * 106.40091 * 311.45769 * 9 8 7 12 12 C 1.76201 * 107.21931 * 64.99656 * 9 8 7 13 13 H 1.07995 * 119.99927 * 0.02562 * 12 9 8 14 14 C 1.37875 * 119.99825 * 180.02562 * 12 9 8 15 15 N 1.31519 * 120.00526 * 0.02562 * 14 12 9 16 16 Si 1.86800 * 119.99989 * 180.02562 * 14 12 9 17 17 H 1.48501 * 109.46812 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47379 * 119.99804 * 16 14 12 19 19 H 1.48501 * 109.47245 * 240.00080 * 16 14 12 20 20 H 1.08999 * 109.46700 * 270.01320 * 1 2 3 21 21 H 1.08990 * 109.47109 * 30.01391 * 1 2 3 22 22 H 1.09001 * 109.47371 * 150.01905 * 1 2 3 23 23 H 1.07997 * 125.62305 * 180.02562 * 4 3 2 24 24 H 1.09001 * 109.47525 * 30.02021 * 7 6 2 25 25 H 1.08999 * 109.47609 * 150.02734 * 7 6 2 26 26 H 0.96997 * 120.00483 * 344.99550 * 8 7 6 27 27 H 0.96994 * 119.99943 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3075 1.0839 0.0000 4 6 3.5766 0.6547 0.0006 5 7 3.5783 -0.6479 0.0004 6 6 2.3050 -1.0806 0.0005 7 6 1.8546 -2.5187 0.0006 8 7 1.7075 -2.9843 1.3819 9 16 0.8803 -4.3830 1.7006 10 8 0.9444 -4.5755 3.1071 11 8 -0.3432 -4.2980 0.9828 12 6 1.7918 -5.7050 0.9754 13 1 2.7104 -5.5006 0.4456 14 6 1.3322 -7.0003 1.0841 15 7 0.2132 -7.2492 1.7288 16 14 2.2989 -8.4020 0.3158 17 1 3.5119 -7.8609 -0.3483 18 1 2.7004 -9.3643 1.3731 19 1 1.4526 -9.0948 -0.6887 20 1 -0.3633 0.0002 1.0277 21 1 -0.3633 0.8898 -0.5140 22 1 -0.3634 -0.8901 -0.5135 23 1 4.4537 1.2848 0.0011 24 1 0.8970 -2.5997 -0.5139 25 1 2.5957 -3.1317 -0.5124 26 1 2.0948 -2.4733 2.1097 27 1 -0.1099 -8.1605 1.8056 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398350407.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:11 Heat of formation + Delta-G solvation = -106.175608 kcal Electronic energy + Delta-G solvation = -15849.129088 eV Core-core repulsion = 12926.789768 eV Total energy + Delta-G solvation = -2922.339321 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 246.051 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -44.33077 -37.49531 -37.01248 -36.14694 -35.22962 -34.96684 -33.15352 -28.65580 -28.25064 -26.40937 -23.20180 -21.88687 -21.03258 -19.40933 -18.55291 -18.02053 -17.62980 -17.00339 -16.62576 -16.17169 -15.82884 -15.36886 -15.00044 -14.10551 -14.01675 -13.91908 -13.81181 -13.27620 -13.16681 -13.01528 -12.61415 -12.51242 -12.43681 -12.27787 -12.14513 -11.50947 -11.25283 -11.02500 -10.27366 -9.72206 -8.75116 -7.47792 0.21820 0.56282 1.34368 1.35465 1.53315 1.65730 1.83305 2.22857 2.58456 3.03331 3.22906 3.65325 3.80231 3.83217 4.23691 4.42509 4.47523 4.58694 4.66246 4.78480 5.00847 5.05091 5.17188 5.30197 5.36749 5.90848 6.25343 6.74024 6.79451 8.21697 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.037680 B = 0.006697 C = 0.006168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.930876 B = 4180.153247 C = 4538.148471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.021 4.021 3 O -0.206 6.206 4 C 0.182 3.818 5 N -0.514 5.514 6 C -0.049 4.049 7 C 0.205 3.795 8 N -1.117 6.117 9 S 2.725 3.275 10 O -1.043 7.043 11 O -1.033 7.033 12 C -1.042 5.042 13 H 0.118 0.882 14 C 0.071 3.929 15 N -0.892 5.892 16 Si 0.990 3.010 17 H -0.250 1.250 18 H -0.260 1.260 19 H -0.256 1.256 20 H 0.091 0.909 21 H 0.105 0.895 22 H 0.094 0.906 23 H 0.299 0.701 24 H 0.094 0.906 25 H 0.075 0.925 26 H 0.411 0.589 27 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.857 13.907 -5.986 15.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.076 4.076 3 O -0.093 6.093 4 C -0.044 4.044 5 N -0.242 5.242 6 C -0.168 4.168 7 C 0.079 3.921 8 N -0.875 5.875 9 S 2.826 3.174 10 O -1.034 7.034 11 O -1.023 7.023 12 C -1.176 5.176 13 H 0.136 0.864 14 C -0.142 4.142 15 N -0.523 5.523 16 Si 0.809 3.191 17 H -0.173 1.173 18 H -0.185 1.185 19 H -0.181 1.181 20 H 0.109 0.891 21 H 0.124 0.876 22 H 0.113 0.887 23 H 0.314 0.686 24 H 0.112 0.888 25 H 0.093 0.907 26 H 0.244 0.756 27 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.321 13.317 -5.591 15.075 hybrid contribution 0.522 -0.369 -0.050 0.641 sum 4.843 12.947 -5.641 14.930 Atomic orbital electron populations 1.20532 0.82177 1.05757 1.04943 1.23652 0.96014 0.83736 1.04207 1.84458 1.18873 1.35941 1.70000 1.29110 0.86309 0.90629 0.98393 1.70308 1.22868 1.12207 1.18840 1.21316 0.89040 0.96533 1.09922 1.19324 1.01584 0.88422 0.82758 1.55448 1.75496 1.43066 1.13506 0.99780 0.73082 0.72371 0.72154 1.93317 1.88133 1.86371 1.35553 1.93304 1.46611 1.87411 1.74990 1.30937 1.24555 1.09912 1.52175 0.86410 1.25985 0.94429 1.02614 0.91138 1.69981 1.20675 1.25332 1.36339 0.85099 0.79013 0.76168 0.78867 1.17313 1.18454 1.18063 0.89066 0.87622 0.88692 0.68575 0.88845 0.90679 0.75584 0.89037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.62 10.22 71.24 0.73 -0.90 15 2 C -0.02 -0.55 7.39 24.79 0.18 -0.37 15 3 O -0.21 -4.61 10.77 -3.68 -0.04 -4.65 15 4 C 0.18 3.61 13.23 130.48 1.73 5.33 15 5 N -0.51 -14.96 11.30 -304.07 -3.43 -18.40 15 6 C -0.05 -1.52 6.50 41.26 0.27 -1.25 15 7 C 0.21 7.37 6.55 85.63 0.56 7.93 15 8 N -1.12 -45.85 5.99 -190.79 -1.14 -46.99 15 9 S 2.73 146.31 5.02 -56.49 -0.28 146.03 15 10 O -1.04 -62.90 18.02 -128.00 -2.31 -65.21 15 11 O -1.03 -59.79 17.49 -128.00 -2.24 -62.03 15 12 C -1.04 -57.80 9.72 67.73 0.66 -57.14 15 13 H 0.12 5.98 7.81 -2.91 -0.02 5.96 15 14 C 0.07 3.98 5.46 84.65 0.46 4.44 15 15 N -0.89 -53.02 13.19 21.45 0.28 -52.74 15 16 Si 0.99 41.55 29.54 68.60 2.03 43.57 15 17 H -0.25 -9.90 7.11 99.48 0.71 -9.19 15 18 H -0.26 -10.36 7.11 99.48 0.71 -9.65 15 19 H -0.26 -10.07 7.11 99.48 0.71 -9.36 15 20 H 0.09 1.86 8.14 -2.39 -0.02 1.84 15 21 H 0.11 1.58 8.14 -2.39 -0.02 1.56 15 22 H 0.09 2.10 7.17 -2.39 -0.02 2.08 15 23 H 0.30 2.10 8.06 -2.91 -0.02 2.08 15 24 H 0.09 3.24 6.78 -2.39 -0.02 3.22 15 25 H 0.08 2.69 8.14 -2.39 -0.02 2.67 15 26 H 0.41 15.48 8.64 -96.75 -0.84 14.64 15 27 H 0.30 15.90 8.31 -92.71 -0.77 15.13 15 Total: -1.00 -79.20 262.90 -2.17 -81.38 By element: Atomic # 1 Polarization: 20.60 SS G_CDS: 0.38 Total: 20.98 kcal Atomic # 6 Polarization: -46.53 SS G_CDS: 4.59 Total: -41.95 kcal Atomic # 7 Polarization: -113.83 SS G_CDS: -4.29 Total: -118.12 kcal Atomic # 8 Polarization: -127.30 SS G_CDS: -4.58 Total: -131.88 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.57 kcal Atomic # 16 Polarization: 146.31 SS G_CDS: -0.28 Total: 146.03 kcal Total: -79.20 -2.17 -81.38 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398350407.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.800 kcal (2) G-P(sol) polarization free energy of solvation -79.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds