Wall clock time and date at job start Mon Mar 30 2020 04:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31254 * 1 3 3 Si 1.86797 * 119.99804 * 2 1 4 4 H 1.48507 * 109.46899 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47274 * 300.00154 * 3 2 1 6 6 H 1.48501 * 109.47104 * 60.00279 * 3 2 1 7 7 C 1.39046 * 120.00142 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00072 * 179.97438 * 7 2 1 9 9 N 1.37180 * 119.99838 * 359.97438 * 7 2 1 10 10 C 1.36442 * 126.00725 * 180.02562 * 9 7 2 11 11 C 1.34911 * 107.85097 * 179.76248 * 10 9 7 12 12 C 1.50695 * 126.03703 * 180.22545 * 11 10 9 13 13 O 1.42900 * 109.47002 * 0.17493 * 12 11 10 14 14 C 1.41198 * 107.92861 * 0.37708 * 11 10 9 15 15 C 1.48158 * 125.95138 * 179.88853 * 14 11 10 16 16 C 1.39617 * 120.11668 * 154.71153 * 15 14 11 17 17 N 1.31948 * 119.85193 * 179.97438 * 16 15 14 18 18 C 1.32250 * 120.10612 * 359.97438 * 17 16 15 19 19 C 1.38426 * 120.24057 * 0.27880 * 18 17 16 20 20 N 1.32028 * 120.13937 * 359.43426 * 19 18 17 21 21 N 1.31845 * 108.09722 * 359.61659 * 14 11 10 22 22 H 0.96997 * 119.99876 * 359.97438 * 1 2 3 23 23 H 1.07997 * 126.07487 * 359.96713 * 10 9 7 24 24 H 1.09004 * 109.47187 * 120.17369 * 12 11 10 25 25 H 1.08998 * 109.47798 * 240.17460 * 12 11 10 26 26 H 0.96705 * 114.00163 * 179.97438 * 13 12 11 27 27 H 1.07998 * 120.07470 * 359.95262 * 16 15 14 28 28 H 1.08002 * 119.87769 * 179.97438 * 18 17 16 29 29 H 1.07994 * 119.93130 * 179.69794 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3125 0.0000 0.0000 3 14 2.2465 1.6177 0.0000 4 1 3.7065 1.3464 -0.0006 5 1 1.8877 2.3965 -1.2125 6 1 1.8877 2.3964 1.2125 7 6 2.0078 -1.2042 -0.0005 8 1 3.0877 -1.2041 -0.0010 9 7 1.3219 -2.3922 -0.0005 10 6 1.8767 -3.6387 -0.0005 11 6 0.8717 -4.5387 0.0048 12 6 1.0241 -6.0379 0.0115 13 8 2.4127 -6.3754 0.0156 14 6 -0.3483 -3.8279 -0.0006 15 6 -1.7037 -4.4263 0.0002 16 6 -2.7864 -3.7078 0.5108 17 7 -3.9913 -4.2455 0.5085 18 6 -4.1738 -5.4622 0.0232 19 6 -3.1024 -6.1803 -0.4793 20 7 -1.8936 -5.6493 -0.4869 21 7 -0.0713 -2.5389 -0.0006 22 1 -0.4850 0.8400 0.0004 23 1 2.9327 -3.8648 -0.0010 24 1 0.5480 -6.4475 0.9024 25 1 0.5514 -6.4553 -0.8775 26 1 2.5863 -7.3268 0.0204 27 1 -2.6380 -2.7142 0.9072 28 1 -5.1616 -5.8990 0.0235 29 1 -3.2563 -7.1753 -0.8699 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409438230.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:19 Heat of formation + Delta-G solvation = 77.530190 kcal Electronic energy + Delta-G solvation = -16993.586747 eV Core-core repulsion = 14111.895402 eV Total energy + Delta-G solvation = -2881.691345 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.49374 -39.46885 -36.12241 -34.08034 -33.52038 -31.85942 -30.03445 -29.19939 -26.10100 -24.60028 -23.92698 -23.18739 -20.15048 -19.02450 -17.61490 -16.69551 -16.55710 -16.33115 -15.74361 -14.92116 -14.50066 -14.38750 -14.03897 -13.33406 -13.22326 -13.06362 -12.35015 -11.92308 -11.64397 -11.33497 -11.18378 -11.07869 -10.82040 -10.73234 -10.43819 -9.89917 -9.53431 -9.12864 -8.99127 -8.53244 -7.85156 -7.24188 -6.70376 -4.37914 1.15833 1.59117 2.90027 3.01021 3.06968 3.49330 3.70866 3.73426 4.18302 4.53253 4.68610 4.83246 4.90200 4.95855 5.01919 5.34571 5.72908 5.81766 6.01762 6.06013 6.23308 6.34160 6.57222 6.84958 6.90193 7.03962 7.38202 7.69179 7.71978 7.97321 8.22441 8.28432 8.50480 9.21414 9.41820 10.25994 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.022276 B = 0.007634 C = 0.005755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.666984 B = 3666.870916 C = 4863.895072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.045 3.955 3 Si 0.937 3.063 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.272 1.272 7 C -0.315 4.315 8 H 0.122 0.878 9 N -0.137 5.137 10 C -0.039 4.039 11 C -0.219 4.219 12 C 0.174 3.826 13 O -0.575 6.575 14 C -0.007 4.007 15 C 0.203 3.797 16 C 0.065 3.935 17 N -0.440 5.440 18 C 0.009 3.991 19 C 0.052 3.948 20 N -0.445 5.445 21 N -0.236 5.236 22 H 0.277 0.723 23 H 0.155 0.845 24 H 0.032 0.968 25 H 0.050 0.950 26 H 0.368 0.632 27 H 0.174 0.826 28 H 0.159 0.841 29 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.000 -7.783 0.065 8.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.172 4.172 3 Si 0.761 3.239 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.449 4.449 8 H 0.140 0.860 9 N 0.094 4.906 10 C -0.184 4.184 11 C -0.233 4.233 12 C 0.096 3.904 13 O -0.379 6.379 14 C -0.158 4.158 15 C 0.063 3.937 16 C -0.098 4.098 17 N -0.154 5.154 18 C -0.150 4.150 19 C -0.109 4.109 20 N -0.162 5.162 21 N -0.071 5.071 22 H 0.088 0.912 23 H 0.172 0.828 24 H 0.050 0.950 25 H 0.069 0.931 26 H 0.213 0.787 27 H 0.191 0.809 28 H 0.177 0.823 29 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -2.621 -5.813 0.056 6.377 hybrid contribution 0.569 -0.721 -0.050 0.920 sum -2.052 -6.534 0.005 6.848 Atomic orbital electron populations 1.70161 1.06250 1.28320 1.34623 1.25676 0.95760 1.00461 0.95325 0.85713 0.79760 0.79885 0.78580 1.18514 1.19809 1.19768 1.20104 0.92008 0.80498 1.52260 0.86010 1.44833 1.03308 1.04353 1.38070 1.21794 0.98533 0.84055 1.14006 1.19178 0.91676 0.93599 1.18869 1.20042 0.80056 0.91779 0.98495 1.86486 1.26094 1.27509 1.97802 1.19560 0.89391 0.92356 1.14445 1.19673 0.92549 0.89462 0.91969 1.23858 0.87593 1.01245 0.97084 1.68373 1.23914 1.10842 1.12287 1.23542 1.00459 0.92227 0.98746 1.23585 0.89035 1.00763 0.97545 1.68392 1.23324 1.11235 1.13214 1.78473 0.90874 1.12077 1.25719 0.91217 0.82799 0.94977 0.93150 0.78747 0.80863 0.82327 0.82088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -20.39 11.80 55.50 0.66 -19.74 15 2 C 0.05 1.13 5.50 -17.50 -0.10 1.04 15 3 Si 0.94 18.39 29.55 -169.99 -5.02 13.36 15 4 H -0.26 -4.91 7.11 56.52 0.40 -4.51 15 5 H -0.27 -5.33 7.11 56.52 0.40 -4.93 15 6 H -0.27 -5.30 7.11 56.52 0.40 -4.90 15 7 C -0.31 -8.14 10.24 -14.86 -0.15 -8.29 15 8 H 0.12 2.84 7.83 -52.49 -0.41 2.43 15 9 N -0.14 -3.71 3.73 -11.62 -0.04 -3.75 15 10 C -0.04 -0.96 10.76 -16.68 -0.18 -1.14 15 11 C -0.22 -5.20 6.10 -104.68 -0.64 -5.84 15 12 C 0.17 3.37 6.60 36.00 0.24 3.61 15 13 O -0.58 -10.03 12.94 -35.23 -0.46 -10.49 15 14 C -0.01 -0.17 6.92 -82.66 -0.57 -0.75 15 15 C 0.20 4.40 6.68 -82.77 -0.55 3.85 15 16 C 0.06 1.33 10.89 -16.99 -0.18 1.14 15 17 N -0.44 -8.02 10.49 -12.74 -0.13 -8.16 15 18 C 0.01 0.14 11.22 -17.30 -0.19 -0.06 15 19 C 0.05 0.77 11.22 -17.40 -0.20 0.57 15 20 N -0.45 -8.46 9.09 -9.60 -0.09 -8.55 15 21 N -0.24 -6.48 10.30 33.47 0.34 -6.13 15 22 H 0.28 6.72 8.30 -40.82 -0.34 6.38 15 23 H 0.15 3.47 7.84 -52.49 -0.41 3.06 15 24 H 0.03 0.60 8.14 -51.93 -0.42 0.18 15 25 H 0.05 0.95 7.76 -51.93 -0.40 0.54 15 26 H 0.37 4.22 9.12 45.56 0.42 4.63 15 27 H 0.17 3.68 8.03 -52.49 -0.42 3.26 15 28 H 0.16 1.66 8.06 -52.49 -0.42 1.24 15 29 H 0.16 1.67 8.06 -52.49 -0.42 1.25 15 LS Contribution 268.49 15.07 4.05 4.05 Total: -1.00 -31.78 268.49 -4.86 -36.64 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -1.63 Total: 8.63 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: -2.53 Total: -5.86 kcal Atomic # 7 Polarization: -47.07 SS G_CDS: 0.74 Total: -46.33 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: -0.46 Total: -10.49 kcal Atomic # 14 Polarization: 18.39 SS G_CDS: -5.02 Total: 13.36 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -31.78 -4.86 -36.64 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409438230.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.172 kcal (2) G-P(sol) polarization free energy of solvation -31.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds