Wall clock time and date at job start Mon Mar 30 2020 03:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31285 * 1 3 3 Si 1.86808 * 119.99875 * 2 1 4 4 H 1.48496 * 109.46895 * 274.97848 * 3 2 1 5 5 H 1.48494 * 109.47119 * 34.98314 * 3 2 1 6 6 H 1.48503 * 109.46676 * 154.98278 * 3 2 1 7 7 C 1.38993 * 120.00123 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99790 * 185.93729 * 7 2 1 9 9 N 1.37394 * 120.00124 * 5.92741 * 7 2 1 10 10 N 1.40023 * 126.11438 * 354.16733 * 9 7 2 11 11 C 1.30833 * 108.26868 * 179.97438 * 10 9 7 12 12 C 1.50703 * 125.77485 * 179.97438 * 11 10 9 13 13 F 1.39902 * 109.46943 * 4.97938 * 12 11 10 14 14 F 1.39895 * 109.46734 * 124.97695 * 12 11 10 15 15 F 1.39899 * 109.47079 * 244.97797 * 12 11 10 16 16 C 1.40283 * 108.53542 * 0.02562 * 11 10 9 17 17 C 1.35303 * 107.85299 * 359.95885 * 16 11 10 18 18 C 1.51300 * 110.38413 * 180.02562 * 17 16 11 19 19 C 1.54447 * 104.98303 * 343.11567 * 18 17 16 20 20 C 1.51374 * 142.04947 * 180.08614 * 16 11 10 21 21 H 0.96998 * 120.00274 * 359.97438 * 1 2 3 22 22 H 1.08997 * 110.34001 * 224.23605 * 18 17 16 23 23 H 1.09004 * 110.33403 * 101.98685 * 18 17 16 24 24 H 1.09003 * 110.92110 * 267.52325 * 19 18 17 25 25 H 1.09003 * 110.93012 * 143.86795 * 19 18 17 26 26 H 1.09000 * 110.33542 * 77.91276 * 20 16 11 27 27 H 1.08998 * 110.33765 * 315.78365 * 20 16 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3128 0.0000 0.0000 3 14 2.2469 1.6178 0.0000 4 1 2.3891 2.1072 -1.3948 5 1 1.5009 2.6200 0.8027 6 1 3.5931 1.4121 0.5921 7 6 2.0078 -1.2037 -0.0005 8 1 3.0835 -1.2062 0.0962 9 7 1.3264 -2.3904 -0.1239 10 7 -0.0651 -2.5450 -0.1416 11 6 -0.3346 -3.8184 -0.2740 12 6 -1.7125 -4.4253 -0.3380 13 9 -2.6709 -3.4062 -0.3480 14 9 -1.8319 -5.1891 -1.5040 15 9 -1.9138 -5.2439 0.7784 16 6 0.8751 -4.5252 -0.3454 17 6 1.8849 -3.6295 -0.2518 18 6 3.2222 -4.3337 -0.3234 19 6 2.9068 -5.8191 -0.0416 20 6 1.4330 -5.9248 -0.4910 21 1 -0.4850 0.8400 0.0004 22 1 3.8989 -3.9396 0.4347 23 1 3.6572 -4.2205 -1.3164 24 1 3.0073 -6.0437 1.0203 25 1 3.5436 -6.4723 -0.6383 26 1 1.3760 -6.2491 -1.5300 27 1 0.8900 -6.6178 0.1517 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409438931.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:25 Heat of formation + Delta-G solvation = -74.679132 kcal Electronic energy + Delta-G solvation = -18126.443485 eV Core-core repulsion = 14664.002357 eV Total energy + Delta-G solvation = -3462.441128 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.26652 -46.83266 -46.74656 -40.22932 -35.56512 -33.62901 -31.16982 -27.22252 -27.11971 -26.53067 -23.88739 -20.80202 -20.17179 -18.80527 -17.68818 -17.56037 -17.10689 -16.45807 -15.09911 -15.06355 -14.25862 -13.75026 -13.61709 -13.25768 -13.20587 -12.96150 -12.95988 -12.59913 -12.38985 -12.14024 -11.83956 -11.49251 -11.36584 -11.15624 -10.67807 -10.55553 -10.52170 -10.33713 -9.60895 -9.10010 -8.39437 -7.19226 -6.74885 -4.49596 2.84607 2.96577 3.03351 3.32494 3.37973 3.48123 3.72277 4.16328 4.81277 4.86584 5.04901 5.34783 5.37036 5.45431 5.52276 5.98772 6.13642 6.24390 6.34797 6.40752 6.51593 6.69119 6.76397 6.94758 7.36388 7.61116 7.80339 8.40332 9.12477 9.27609 10.21465 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.022299 B = 0.009770 C = 0.007135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.345916 B = 2865.199158 C = 3923.276921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.763 5.763 2 C 0.045 3.955 3 Si 0.939 3.061 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.262 1.262 7 C -0.320 4.320 8 H 0.123 0.877 9 N -0.111 5.111 10 N -0.213 5.213 11 C -0.104 4.104 12 C 0.558 3.442 13 F -0.176 7.176 14 F -0.185 7.185 15 F -0.185 7.185 16 C -0.239 4.239 17 C -0.059 4.059 18 C -0.023 4.023 19 C -0.112 4.112 20 C -0.034 4.034 21 H 0.280 0.720 22 H 0.062 0.938 23 H 0.068 0.932 24 H 0.067 0.933 25 H 0.069 0.931 26 H 0.061 0.939 27 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.326 -5.817 -0.535 6.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.389 5.389 2 C -0.173 4.173 3 Si 0.762 3.238 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.186 1.186 7 C -0.453 4.453 8 H 0.140 0.860 9 N 0.121 4.879 10 N -0.047 5.047 11 C -0.255 4.255 12 C 0.502 3.498 13 F -0.157 7.157 14 F -0.166 7.166 15 F -0.167 7.167 16 C -0.253 4.253 17 C -0.187 4.187 18 C -0.062 4.062 19 C -0.150 4.150 20 C -0.072 4.072 21 H 0.090 0.910 22 H 0.081 0.919 23 H 0.086 0.914 24 H 0.086 0.914 25 H 0.088 0.912 26 H 0.079 0.921 27 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.569 -4.524 -0.407 5.218 hybrid contribution 0.334 0.047 -0.088 0.348 sum 2.903 -4.477 -0.495 5.359 Atomic orbital electron populations 1.70182 1.06263 1.28691 1.33801 1.25727 0.95778 1.00598 0.95203 0.85735 0.79494 0.79506 0.79070 1.19407 1.19875 1.18564 1.20131 0.92407 0.80546 1.52258 0.85995 1.44442 1.02449 1.03571 1.37440 1.78313 0.90141 1.11583 1.24633 1.21046 0.90610 0.94526 1.19314 1.17106 0.84577 0.75205 0.72878 1.93167 1.66668 1.59760 1.96139 1.93129 1.96591 1.77043 1.49877 1.93134 1.95794 1.74123 1.53631 1.19947 0.90966 0.96077 1.18298 1.21362 0.96865 0.85707 1.14781 1.20271 0.91749 0.93116 1.01067 1.22290 0.96302 0.95385 1.01033 1.20228 0.94174 0.92772 1.00030 0.90956 0.91932 0.91361 0.91399 0.91197 0.92093 0.92523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -20.78 11.84 55.50 0.66 -20.12 15 2 C 0.05 1.14 5.50 -17.51 -0.10 1.04 15 3 Si 0.94 18.38 29.56 -169.99 -5.02 13.35 15 4 H -0.27 -5.21 7.11 56.52 0.40 -4.81 15 5 H -0.27 -5.31 7.11 56.52 0.40 -4.91 15 6 H -0.26 -4.88 7.11 56.52 0.40 -4.47 15 7 C -0.32 -8.29 10.25 -14.78 -0.15 -8.44 15 8 H 0.12 2.84 7.84 -52.48 -0.41 2.42 15 9 N -0.11 -3.03 3.74 -7.58 -0.03 -3.06 15 10 N -0.21 -6.07 10.20 33.75 0.34 -5.72 15 11 C -0.10 -2.66 6.51 -82.25 -0.54 -3.20 15 12 C 0.56 12.66 3.50 36.01 0.13 12.78 15 13 F -0.18 -4.12 17.13 2.25 0.04 -4.08 15 14 F -0.18 -3.88 17.30 2.25 0.04 -3.84 15 15 F -0.19 -3.92 17.30 2.25 0.04 -3.88 15 16 C -0.24 -5.55 6.84 -104.57 -0.72 -6.27 15 17 C -0.06 -1.41 7.55 -81.26 -0.61 -2.02 15 18 C -0.02 -0.41 6.79 -26.83 -0.18 -0.59 15 19 C -0.11 -1.69 7.13 -25.21 -0.18 -1.87 15 20 C -0.03 -0.60 6.78 -26.79 -0.18 -0.78 15 21 H 0.28 6.94 8.31 -40.82 -0.34 6.60 15 22 H 0.06 1.03 8.14 -51.93 -0.42 0.61 15 23 H 0.07 1.12 8.14 -51.93 -0.42 0.70 15 24 H 0.07 0.96 8.14 -51.93 -0.42 0.54 15 25 H 0.07 0.84 8.14 -51.93 -0.42 0.42 15 26 H 0.06 1.02 8.14 -51.93 -0.42 0.60 15 27 H 0.06 0.95 8.14 -51.93 -0.42 0.53 15 LS Contribution 254.22 15.07 3.83 3.83 Total: -1.00 -29.92 254.22 -4.71 -34.63 By element: Atomic # 1 Polarization: 0.31 SS G_CDS: -2.08 Total: -1.77 kcal Atomic # 6 Polarization: -6.81 SS G_CDS: -2.53 Total: -9.34 kcal Atomic # 7 Polarization: -29.87 SS G_CDS: 0.97 Total: -28.90 kcal Atomic # 9 Polarization: -11.92 SS G_CDS: 0.12 Total: -11.80 kcal Atomic # 14 Polarization: 18.38 SS G_CDS: -5.02 Total: 13.35 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -29.92 -4.71 -34.63 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409438931.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.048 kcal (2) G-P(sol) polarization free energy of solvation -29.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds