Wall clock time and date at job start Mon Mar 30 2020 04:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00240 * 2 1 4 4 H 1.48499 * 109.47073 * 239.99632 * 3 2 1 5 5 H 1.48502 * 109.47305 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.47414 * 119.99470 * 3 2 1 7 7 C 1.37875 * 119.99958 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00136 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00077 * 0.02562 * 7 2 1 10 10 N 1.46492 * 109.47245 * 179.97438 * 9 7 2 11 11 C 1.34778 * 119.99875 * 179.97438 * 10 9 7 12 12 O 1.21554 * 120.00300 * 0.02562 * 11 10 9 13 13 C 1.47766 * 119.99882 * 180.02562 * 11 10 9 14 14 C 1.39638 * 121.07613 * 359.97438 * 13 11 10 15 15 C 1.38334 * 119.37635 * 180.02562 * 14 13 11 16 16 N 1.31727 * 121.54897 * 359.97438 * 15 14 13 17 17 C 1.32112 * 121.94698 * 0.02562 * 16 15 14 18 18 N 1.37942 * 133.80397 * 180.02562 * 17 16 15 19 19 H 0.96997 * 126.36219 * 0.25889 * 18 17 16 20 20 C 1.35995 * 107.28056 * 179.97438 * 18 17 16 21 21 N 1.30282 * 110.05935 * 0.02562 * 20 18 17 22 22 C 1.34657 * 109.66642 * 359.97438 * 21 20 18 23 23 H 0.97008 * 119.99763 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.46779 * 59.99589 * 9 7 2 25 25 H 1.08997 * 109.47109 * 299.99882 * 9 7 2 26 26 H 0.96999 * 120.00004 * 0.02562 * 10 9 7 27 27 H 1.08004 * 120.31123 * 0.02562 * 14 13 11 28 28 H 1.08003 * 119.22382 * 179.97438 * 15 14 13 29 29 H 1.08002 * 124.96816 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2029 -3.6126 0.0005 11 6 1.7536 -4.8833 0.0011 12 8 0.5585 -5.1055 0.0011 13 6 2.7138 -6.0065 0.0016 14 6 4.0912 -5.7772 0.0011 15 6 4.9586 -6.8548 0.0011 16 7 4.5162 -8.0956 0.0021 17 6 3.2255 -8.3776 0.0027 18 7 2.5052 -9.5540 0.0042 19 1 2.8710 -10.4523 0.0087 20 6 1.1868 -9.2204 0.0046 21 7 1.0538 -7.9244 0.0029 22 6 2.2689 -7.3441 0.0019 23 1 -0.4850 0.8401 -0.0004 24 1 0.6246 -2.5570 -0.8896 25 1 0.6240 -2.5567 0.8903 26 1 3.1566 -3.4354 0.0009 27 1 4.4758 -4.7679 0.0007 28 1 6.0234 -6.6746 0.0003 29 1 0.3696 -9.9266 0.0053 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427606769.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:39 Heat of formation + Delta-G solvation = 23.392158 kcal Electronic energy + Delta-G solvation = -16629.588587 eV Core-core repulsion = 13745.549641 eV Total energy + Delta-G solvation = -2884.038946 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.41178 -40.60307 -39.10379 -36.20181 -34.79670 -34.32913 -32.44038 -30.75205 -29.34730 -26.14922 -24.56344 -24.16466 -22.78564 -21.72968 -20.00575 -18.75175 -18.46685 -17.87809 -17.02974 -16.84660 -16.31783 -16.02015 -15.98255 -15.61164 -14.83122 -14.61983 -14.09661 -14.03889 -13.66021 -13.54797 -12.92774 -12.66519 -12.22982 -12.16886 -11.90936 -11.50996 -11.16085 -10.78572 -10.23105 -10.07278 -9.80967 -9.57879 -8.27522 -6.44984 -0.66855 0.10583 1.45159 1.49996 1.57875 1.58713 1.74722 1.96917 2.23107 2.46318 2.83807 3.07462 3.19304 3.46121 3.67513 3.72510 4.01722 4.23168 4.50033 4.66102 4.85559 5.00139 5.14302 5.22002 5.44038 5.51722 5.66890 5.83052 6.21947 6.63807 6.73809 6.81668 6.86139 7.22585 7.40379 8.84755 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.043975 B = 0.004902 C = 0.004421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.570596 B = 5710.412737 C = 6331.839277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.988 3.012 4 H -0.260 1.260 5 H -0.287 1.287 6 H -0.260 1.260 7 C -0.557 4.557 8 H 0.089 0.911 9 C 0.268 3.732 10 N -0.695 5.695 11 C 0.532 3.468 12 O -0.573 6.573 13 C -0.064 4.064 14 C -0.133 4.133 15 C 0.140 3.860 16 N -0.472 5.472 17 C 0.220 3.780 18 N -0.570 5.570 19 H 0.449 0.551 20 C 0.298 3.702 21 N -0.535 5.535 22 C 0.019 3.981 23 H 0.269 0.731 24 H -0.012 1.012 25 H -0.012 1.012 26 H 0.409 0.591 27 H 0.177 0.823 28 H 0.223 0.777 29 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.728 -18.137 0.019 22.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.811 3.189 4 H -0.184 1.184 5 H -0.213 1.213 6 H -0.184 1.184 7 C -0.594 4.594 8 H 0.107 0.893 9 C 0.145 3.855 10 N -0.347 5.347 11 C 0.319 3.681 12 O -0.452 6.452 13 C -0.077 4.077 14 C -0.155 4.155 15 C -0.026 4.026 16 N -0.185 5.185 17 C -0.017 4.017 18 N -0.187 5.187 19 H 0.293 0.707 20 C 0.012 3.988 21 N -0.254 5.254 22 C -0.104 4.104 23 H 0.078 0.922 24 H 0.006 0.994 25 H 0.006 0.994 26 H 0.247 0.753 27 H 0.194 0.806 28 H 0.239 0.761 29 H 0.294 0.706 Dipole moment (debyes) X Y Z Total from point charges 11.477 -18.402 0.016 21.687 hybrid contribution 0.150 0.836 0.002 0.850 sum 11.626 -17.565 0.018 21.064 Atomic orbital electron populations 1.70151 1.08415 1.28678 1.49819 1.26115 0.95783 1.04050 0.93755 0.85160 0.77855 0.76269 0.79640 1.18447 1.21275 1.18437 1.21582 0.94494 0.90192 1.53157 0.89280 1.18597 0.88631 0.84045 0.94213 1.46069 1.11437 1.04832 1.72313 1.18704 0.88252 0.83696 0.77454 1.90760 1.18191 1.85264 1.51032 1.19845 0.94772 0.90355 1.02761 1.22617 0.90150 1.03729 0.99038 1.23298 1.02084 0.83938 0.93262 1.66372 1.12491 1.25107 1.14558 1.19149 0.90198 0.87581 1.04788 1.42880 1.06380 1.07693 1.61755 0.70727 1.26741 0.85691 0.92909 0.93500 1.70318 1.25209 1.07300 1.22607 1.19582 0.91365 0.93863 1.05639 0.92239 0.99389 0.99383 0.75344 0.80620 0.76111 0.70616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.09 13.29 21.45 0.28 -56.80 15 2 C 0.00 0.14 5.46 84.65 0.46 0.60 15 3 Si 0.99 42.27 29.54 68.60 2.03 44.30 15 4 H -0.26 -10.45 7.11 99.48 0.71 -9.74 15 5 H -0.29 -12.27 7.11 99.48 0.71 -11.56 15 6 H -0.26 -10.45 7.11 99.48 0.71 -9.74 15 7 C -0.56 -30.52 9.28 25.60 0.24 -30.28 15 8 H 0.09 4.31 7.60 -2.91 -0.02 4.29 15 9 C 0.27 15.24 5.43 85.64 0.46 15.70 15 10 N -0.70 -31.38 5.51 -469.81 -2.59 -33.97 15 11 C 0.53 24.75 7.79 86.76 0.68 25.43 15 12 O -0.57 -32.46 16.19 -3.89 -0.06 -32.52 15 13 C -0.06 -2.32 5.93 -19.75 -0.12 -2.44 15 14 C -0.13 -3.23 9.60 22.63 0.22 -3.01 15 15 C 0.14 2.68 11.14 84.73 0.94 3.63 15 16 N -0.47 -11.07 10.35 -192.84 -2.00 -13.07 15 17 C 0.22 5.84 8.46 133.93 1.13 6.98 15 18 N -0.57 -9.88 6.23 -195.71 -1.22 -11.09 15 19 H 0.45 3.69 8.96 -92.71 -0.83 2.86 15 20 C 0.30 5.85 12.97 180.02 2.34 8.19 15 21 N -0.54 -18.64 10.63 -191.50 -2.04 -20.68 15 22 C 0.02 0.66 6.85 40.01 0.27 0.93 15 23 H 0.27 15.38 8.31 -92.70 -0.77 14.61 15 24 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 15 25 H -0.01 -0.76 8.14 -2.39 -0.02 -0.77 15 26 H 0.41 14.66 6.46 -92.71 -0.60 14.06 15 27 H 0.18 3.20 6.53 -2.91 -0.02 3.18 15 28 H 0.22 1.91 8.06 -2.91 -0.02 1.88 15 29 H 0.28 1.83 8.06 -2.91 -0.02 1.80 15 Total: -1.00 -88.86 266.21 0.83 -88.03 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -0.21 Total: 10.08 kcal Atomic # 6 Polarization: 19.10 SS G_CDS: 6.63 Total: 25.72 kcal Atomic # 7 Polarization: -128.06 SS G_CDS: -7.55 Total: -135.61 kcal Atomic # 8 Polarization: -32.46 SS G_CDS: -0.06 Total: -32.52 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Total: -88.86 0.83 -88.03 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427606769.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.424 kcal (2) G-P(sol) polarization free energy of solvation -88.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds