Wall clock time and date at job start Mon Mar 30 2020 04:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 119.99871 * 2 1 4 4 H 1.48508 * 109.46909 * 269.99403 * 3 2 1 5 5 H 1.48498 * 109.47321 * 29.99443 * 3 2 1 6 6 H 1.48497 * 109.47327 * 149.99550 * 3 2 1 7 7 C 1.37870 * 119.99906 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00389 * 180.02562 * 7 2 1 9 9 C 1.50707 * 120.00072 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.46966 * 179.97438 * 9 7 2 11 11 C 1.34779 * 120.00130 * 180.02562 * 10 9 7 12 12 O 1.21629 * 119.99824 * 0.02562 * 11 10 9 13 13 C 1.47210 * 120.00379 * 180.02562 * 11 10 9 14 14 C 1.37745 * 119.94069 * 180.02562 * 13 11 10 15 15 C 1.39858 * 119.93343 * 179.97438 * 14 13 11 16 16 C 1.36309 * 119.81587 * 0.02562 * 15 14 13 17 17 C 1.40776 * 119.70708 * 0.25054 * 16 15 14 18 18 N 1.32815 * 132.73600 * 180.42152 * 17 16 15 19 19 C 1.32380 * 109.74291 * 179.54373 * 18 17 16 20 20 N 1.31387 * 109.61257 * 359.75531 * 19 18 17 21 21 N 1.36551 * 119.87896 * 359.48456 * 17 16 15 22 22 H 0.97007 * 120.00180 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46853 * 60.00082 * 9 7 2 24 24 H 1.08993 * 109.47443 * 300.00143 * 9 7 2 25 25 H 0.97000 * 120.00520 * 0.02562 * 10 9 7 26 26 H 1.08003 * 120.03596 * 0.02562 * 14 13 11 27 27 H 1.07997 * 120.09821 * 180.02562 * 15 14 13 28 28 H 1.08002 * 120.14194 * 179.97438 * 16 15 14 29 29 H 1.07993 * 125.19030 * 179.73135 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2030 -3.6126 0.0005 11 6 1.7538 -4.8834 0.0000 12 8 0.5580 -5.1056 -0.0009 13 6 2.7104 -6.0023 0.0006 14 6 2.2498 -7.3005 -0.0005 15 6 3.1588 -8.3634 -0.0005 16 6 4.4981 -8.1099 0.0011 17 6 4.9561 -6.7788 0.0081 18 7 6.1718 -6.2439 0.0039 19 6 6.0793 -4.9233 0.0046 20 7 4.8139 -4.5698 0.0039 21 7 4.0579 -5.7503 0.0026 22 1 -0.4851 0.8401 -0.0004 23 1 0.6247 -2.5571 -0.8897 24 1 0.6239 -2.5567 0.8902 25 1 3.1566 -3.4355 0.0009 26 1 1.1879 -7.4974 -0.0022 27 1 2.8007 -9.3823 -0.0017 28 1 5.2047 -8.9267 0.0015 29 1 6.9162 -4.2408 0.0060 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427608427.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:05 Heat of formation + Delta-G solvation = 86.498558 kcal Electronic energy + Delta-G solvation = -16933.665216 eV Core-core repulsion = 14052.362768 eV Total energy + Delta-G solvation = -2881.302448 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.75921 -39.24177 -37.45978 -34.46257 -33.69142 -32.25667 -31.03052 -30.02892 -27.52562 -24.85205 -23.53444 -23.16332 -21.78592 -20.22658 -18.10097 -17.69527 -16.82675 -16.33917 -16.11846 -15.58830 -15.18404 -14.45638 -14.44445 -14.17736 -13.22180 -13.04008 -12.77506 -12.37899 -12.09586 -11.82675 -11.60173 -11.28014 -11.01492 -10.90031 -10.43447 -10.17961 -9.69767 -9.54520 -9.40382 -8.78215 -8.43307 -7.97932 -6.18463 -4.24974 0.18154 0.82273 1.90745 2.44850 3.05928 3.24653 3.30301 3.33511 3.57401 3.61080 3.84450 4.12830 4.33682 4.63467 4.73285 4.86282 5.15991 5.17938 5.34875 5.61498 5.78537 6.01232 6.10961 6.31873 6.52752 7.16834 7.27487 7.41960 7.63630 7.83391 7.92049 8.46658 8.67110 8.92853 9.40828 10.91847 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.030956 B = 0.006138 C = 0.005137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.286747 B = 4560.615919 C = 5449.757372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.542 4.542 8 H 0.065 0.935 9 C 0.246 3.754 10 N -0.686 5.686 11 C 0.535 3.465 12 O -0.538 6.538 13 C 0.107 3.893 14 C -0.096 4.096 15 C -0.065 4.065 16 C -0.094 4.094 17 C 0.275 3.725 18 N -0.547 5.547 19 C 0.242 3.758 20 N -0.337 5.337 21 N -0.274 5.274 22 H 0.266 0.734 23 H 0.032 0.968 24 H 0.032 0.968 25 H 0.409 0.591 26 H 0.174 0.826 27 H 0.158 0.842 28 H 0.160 0.840 29 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.109 -15.533 0.011 18.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.139 4.139 3 Si 0.732 3.268 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.581 4.581 8 H 0.083 0.917 9 C 0.125 3.875 10 N -0.337 5.337 11 C 0.317 3.683 12 O -0.418 6.418 13 C -0.005 4.005 14 C -0.119 4.119 15 C -0.091 4.091 16 C -0.116 4.116 17 C 0.022 3.978 18 N -0.277 5.277 19 C -0.058 4.058 20 N -0.169 5.169 21 N -0.051 5.051 22 H 0.076 0.924 23 H 0.050 0.950 24 H 0.050 0.950 25 H 0.249 0.751 26 H 0.191 0.809 27 H 0.175 0.825 28 H 0.177 0.823 29 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 8.310 -14.764 0.010 16.941 hybrid contribution 0.829 0.953 -0.005 1.263 sum 9.138 -13.811 0.005 16.560 Atomic orbital electron populations 1.69972 1.06089 1.27380 1.48937 1.24938 0.94942 0.99458 0.94592 0.86380 0.79679 0.82409 0.78288 1.20392 1.20950 1.19643 1.21206 0.93465 0.90152 1.53232 0.91684 1.19274 0.88252 0.81822 0.98105 1.46915 1.13509 1.05308 1.67955 1.17603 0.87244 0.83144 0.80327 1.90817 1.14332 1.84388 1.52244 1.21132 0.79565 0.97115 1.02691 1.21485 1.02743 0.88366 0.99351 1.21261 0.91837 1.00428 0.95574 1.20449 0.96592 0.92019 1.02500 1.21862 0.85587 0.91497 0.98863 1.70825 1.19788 1.08012 1.29073 1.26204 0.94214 0.91558 0.93798 1.78242 1.04562 1.01206 1.32882 1.47950 1.06086 1.06955 1.44144 0.92403 0.94982 0.94963 0.75085 0.80869 0.82479 0.82289 0.75490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.23 13.29 55.43 0.74 -25.49 15 2 C 0.06 1.81 5.46 -17.82 -0.10 1.72 15 3 Si 0.91 21.25 29.54 -169.99 -5.02 16.23 15 4 H -0.28 -6.43 7.11 56.52 0.40 -6.02 15 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 15 6 H -0.27 -6.23 7.11 56.52 0.40 -5.83 15 7 C -0.54 -15.25 9.28 -34.44 -0.32 -15.57 15 8 H 0.07 1.76 7.60 -52.49 -0.40 1.36 15 9 C 0.25 6.73 5.43 -5.19 -0.03 6.70 15 10 N -0.69 -16.01 5.54 -62.63 -0.35 -16.35 15 11 C 0.53 11.35 7.78 -12.62 -0.10 11.25 15 12 O -0.54 -12.58 16.29 5.25 0.09 -12.49 15 13 C 0.11 1.77 6.80 -82.05 -0.56 1.21 15 14 C -0.10 -1.14 9.58 -39.16 -0.38 -1.52 15 15 C -0.07 -0.54 10.04 -39.67 -0.40 -0.94 15 16 C -0.09 -0.91 10.09 -39.32 -0.40 -1.31 15 17 C 0.28 3.88 7.88 -156.38 -1.23 2.64 15 18 N -0.55 -7.93 11.24 -13.99 -0.16 -8.09 15 19 C 0.24 3.39 12.98 -92.00 -1.19 2.20 15 20 N -0.34 -5.78 9.98 29.25 0.29 -5.49 15 21 N -0.27 -4.51 3.93 -8.82 -0.03 -4.55 15 22 H 0.27 7.37 8.31 -40.82 -0.34 7.03 15 23 H 0.03 0.95 8.14 -51.93 -0.42 0.52 15 24 H 0.03 0.95 8.14 -51.93 -0.42 0.53 15 25 H 0.41 9.09 5.26 -40.82 -0.21 8.88 15 26 H 0.17 1.86 7.59 -52.48 -0.40 1.46 15 27 H 0.16 0.62 8.06 -52.49 -0.42 0.20 15 28 H 0.16 1.04 8.06 -52.49 -0.42 0.62 15 29 H 0.23 2.14 8.06 -52.49 -0.42 1.72 15 LS Contribution 265.65 15.07 4.00 4.00 Total: -1.00 -34.16 265.65 -7.40 -41.57 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -2.26 Total: 4.29 kcal Atomic # 6 Polarization: 11.07 SS G_CDS: -4.70 Total: 6.37 kcal Atomic # 7 Polarization: -60.46 SS G_CDS: 0.49 Total: -59.98 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: 0.09 Total: -12.49 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -34.16 -7.40 -41.57 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427608427.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.064 kcal (2) G-P(sol) polarization free energy of solvation -34.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds