Wall clock time and date at job start Mon Mar 30 2020 03:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99472 * 2 1 4 4 H 1.48498 * 109.47375 * 269.99512 * 3 2 1 5 5 H 1.48504 * 109.47256 * 29.99827 * 3 2 1 6 6 H 1.48506 * 109.47303 * 149.99613 * 3 2 1 7 7 C 1.37874 * 120.00632 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00496 * 180.02562 * 7 2 1 9 9 S 1.76203 * 119.99812 * 0.02562 * 7 2 1 10 10 O 1.42101 * 102.99921 * 293.84985 * 9 7 2 11 11 C 1.81392 * 103.00148 * 179.97438 * 9 7 2 12 12 C 1.50702 * 109.47257 * 180.02562 * 11 9 7 13 13 O 1.20822 * 119.99854 * 359.72152 * 12 11 9 14 14 O 1.34234 * 119.99997 * 179.97438 * 12 11 9 15 15 C 1.45199 * 116.99947 * 179.72219 * 14 12 11 16 16 C 1.54266 * 110.03123 * 267.90887 * 15 14 12 17 17 C 1.54967 * 104.15674 * 217.13486 * 16 15 14 18 18 C 1.54892 * 102.77601 * 37.88936 * 17 16 15 19 19 C 1.53874 * 110.03092 * 150.68640 * 15 14 12 20 20 H 0.96996 * 120.00877 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.47607 * 59.99652 * 11 9 7 22 22 H 1.09001 * 109.46924 * 299.99793 * 11 9 7 23 23 H 1.08999 * 110.01668 * 29.29821 * 15 14 12 24 24 H 1.08994 * 110.48746 * 335.78294 * 16 15 14 25 25 H 1.08997 * 110.48565 * 98.43079 * 16 15 14 26 26 H 1.08998 * 110.72516 * 279.57769 * 17 16 15 27 27 H 1.09002 * 110.92365 * 156.29117 * 17 16 15 28 28 H 1.09001 * 110.48514 * 203.40322 * 18 17 16 29 29 H 1.09004 * 110.60121 * 80.81617 * 18 17 16 30 30 H 1.08993 * 110.03590 * 238.57073 * 19 15 14 31 31 H 1.09004 * 110.03047 * 359.95627 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4463 2.6527 0.7000 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 16 1.1237 -2.7200 0.0005 10 8 0.4786 -2.7166 1.2666 11 6 2.4504 -3.9570 0.0005 12 6 1.8489 -5.3388 -0.0001 13 8 0.6484 -5.4750 0.0046 14 8 2.6469 -6.4182 -0.0007 15 6 1.9985 -7.7173 0.0050 16 6 1.8156 -8.2103 1.4552 17 6 2.0640 -9.7376 1.3706 18 6 3.2160 -9.8406 0.3403 19 6 2.8881 -8.7535 -0.7039 20 1 -0.4851 0.8399 -0.0004 21 1 3.0667 -3.8290 0.8905 22 1 3.0665 -3.8290 -0.8895 23 1 1.0307 -7.6535 -0.4925 24 1 2.5472 -7.7408 2.1128 25 1 0.8028 -8.0064 1.8026 26 1 1.1748 -10.2535 1.0085 27 1 2.3733 -10.1358 2.3369 28 1 3.2246 -10.8263 -0.1249 29 1 4.1753 -9.6359 0.8159 30 1 2.3519 -9.1932 -1.5448 31 1 3.8063 -8.2809 -1.0529 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000526868508.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:05 Heat of formation + Delta-G solvation = -150.624757 kcal Electronic energy + Delta-G solvation = -15684.426953 eV Core-core repulsion = 12863.700516 eV Total energy + Delta-G solvation = -2820.726437 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 246.076 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.14596 -37.67883 -35.37725 -33.69420 -32.81882 -29.74071 -28.86693 -27.68522 -25.81101 -21.58377 -20.83970 -20.00329 -18.24007 -17.28410 -16.10332 -15.74827 -15.45087 -15.31630 -14.94787 -14.43390 -13.49798 -13.39820 -13.18787 -12.76638 -12.32157 -12.12738 -11.76860 -11.50506 -11.31418 -11.22133 -11.17617 -10.85739 -10.80362 -10.71310 -10.58240 -10.24627 -10.20820 -9.93415 -9.07984 -8.46240 -6.92478 -6.33741 -4.84999 2.74600 2.89528 3.11897 3.19147 3.24278 3.65077 4.13182 4.42085 4.45228 4.75643 4.83705 5.06807 5.25620 5.31190 5.34038 5.46196 5.48073 5.59579 5.67419 5.72281 5.79312 5.88851 6.08275 6.09481 6.16184 6.26562 6.30017 6.89862 7.44699 8.15291 8.25499 9.06000 10.44978 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.065608 B = 0.004722 C = 0.004577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 426.672269 B = 5928.369378 C = 6116.300251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.121 3.879 3 Si 0.908 3.092 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.269 1.269 7 C -0.838 4.838 8 H 0.081 0.919 9 S 1.389 4.611 10 O -0.885 6.885 11 C -0.494 4.494 12 C 0.492 3.508 13 O -0.506 6.506 14 O -0.356 6.356 15 C 0.078 3.922 16 C -0.143 4.143 17 C -0.122 4.122 18 C -0.123 4.123 19 C -0.123 4.123 20 H 0.282 0.718 21 H 0.104 0.896 22 H 0.132 0.868 23 H 0.089 0.911 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.451 -14.878 -4.497 16.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C -0.093 4.093 3 Si 0.733 3.267 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.978 4.978 8 H 0.100 0.900 9 S 1.581 4.419 10 O -0.880 6.880 11 C -0.619 4.619 12 C 0.335 3.665 13 O -0.394 6.394 14 O -0.274 6.274 15 C 0.023 3.977 16 C -0.181 4.181 17 C -0.160 4.160 18 C -0.160 4.160 19 C -0.160 4.160 20 H 0.092 0.908 21 H 0.122 0.878 22 H 0.151 0.849 23 H 0.107 0.893 24 H 0.095 0.905 25 H 0.094 0.906 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.095 0.905 31 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.986 -15.111 -4.465 16.254 hybrid contribution 1.945 1.335 1.841 2.992 sum 5.931 -13.776 -2.624 15.227 Atomic orbital electron populations 1.69889 1.06541 1.29497 1.42682 1.24765 0.94490 0.99982 0.90087 0.86366 0.80171 0.81275 0.78887 1.19308 1.20461 1.19333 1.27648 1.02279 1.06621 1.61285 0.90026 1.70117 0.81729 0.82927 1.07154 1.92800 1.63588 1.85351 1.46261 1.28805 1.22840 1.02369 1.07885 1.23207 0.85660 0.86455 0.71139 1.90637 1.16120 1.86942 1.45659 1.86653 1.41595 1.14993 1.84163 1.23413 0.97190 0.80271 0.96858 1.22823 1.02936 0.96007 0.96349 1.22452 0.98628 0.95450 0.99449 1.22348 0.98876 0.98335 0.96473 1.22244 1.00642 0.94992 0.98142 0.90790 0.87772 0.84947 0.89279 0.90507 0.90644 0.91176 0.91167 0.91319 0.91282 0.90534 0.90060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.36 13.15 55.43 0.73 -23.64 16 2 C 0.12 3.31 5.46 -17.82 -0.10 3.21 16 3 Si 0.91 20.52 29.54 -169.99 -5.02 15.50 16 4 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.84 -22.71 9.38 30.60 0.29 -22.43 16 8 H 0.08 2.09 7.81 -52.49 -0.41 1.68 16 9 S 1.39 34.99 12.12 -107.50 -1.30 33.69 16 10 O -0.89 -28.07 17.82 -35.23 -0.63 -28.69 16 11 C -0.49 -10.04 6.48 36.01 0.23 -9.80 16 12 C 0.49 9.87 7.97 36.01 0.29 10.16 16 13 O -0.51 -11.26 15.09 -18.75 -0.28 -11.54 16 14 O -0.36 -6.14 9.79 -39.27 -0.38 -6.53 16 15 C 0.08 1.10 3.23 -25.61 -0.08 1.02 16 16 C -0.14 -1.88 6.57 -25.03 -0.16 -2.04 16 17 C -0.12 -1.18 6.91 -24.69 -0.17 -1.35 16 18 C -0.12 -1.10 6.83 -25.07 -0.17 -1.27 16 19 C -0.12 -1.30 6.62 -25.61 -0.17 -1.46 16 20 H 0.28 7.37 8.31 -40.82 -0.34 7.03 16 21 H 0.10 2.17 8.14 -51.92 -0.42 1.74 16 22 H 0.13 2.21 8.14 -51.92 -0.42 1.78 16 23 H 0.09 1.31 7.17 -51.93 -0.37 0.94 16 24 H 0.08 1.06 8.08 -51.93 -0.42 0.64 16 25 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 26 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.08 0.87 7.96 -51.93 -0.41 0.45 16 LS Contribution 282.75 15.07 4.26 4.26 Total: -1.00 -35.11 282.75 -6.81 -41.92 By element: Atomic # 1 Polarization: 3.13 SS G_CDS: -4.13 Total: -1.01 kcal Atomic # 6 Polarization: -23.92 SS G_CDS: -0.05 Total: -23.96 kcal Atomic # 7 Polarization: -24.36 SS G_CDS: 0.73 Total: -23.64 kcal Atomic # 8 Polarization: -45.47 SS G_CDS: -1.30 Total: -46.76 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Atomic # 16 Polarization: 34.99 SS G_CDS: -1.30 Total: 33.69 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -35.11 -6.81 -41.92 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000526868508.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.707 kcal (2) G-P(sol) polarization free energy of solvation -35.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds