Wall clock time and date at job start Mon Mar 30 2020 03:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 120.00040 * 2 1 4 4 H 1.48504 * 109.46904 * 269.99892 * 3 2 1 5 5 H 1.48498 * 109.47343 * 29.99824 * 3 2 1 6 6 H 1.48503 * 109.47015 * 150.00316 * 3 2 1 7 7 C 1.37877 * 119.99982 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99662 * 359.97438 * 7 2 1 9 9 S 1.76197 * 120.00117 * 179.97438 * 7 2 1 10 10 O 1.42105 * 102.99930 * 66.14604 * 9 7 2 11 11 C 1.81404 * 103.00066 * 179.97438 * 9 7 2 12 12 C 1.50698 * 109.47110 * 179.97438 * 11 9 7 13 13 O 1.20825 * 119.99878 * 0.02562 * 12 11 9 14 14 O 1.34227 * 120.00147 * 179.97438 * 12 11 9 15 15 C 1.45193 * 117.00397 * 180.02562 * 14 12 11 16 16 C 1.54271 * 110.03392 * 267.90870 * 15 14 12 17 17 C 1.54961 * 104.16137 * 217.13274 * 16 15 14 18 18 C 1.54895 * 102.77572 * 37.88947 * 17 16 15 19 19 C 1.53872 * 110.03617 * 150.69248 * 15 14 12 20 20 H 0.96998 * 119.99349 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.46905 * 299.99726 * 11 9 7 22 22 H 1.08994 * 109.47180 * 59.99631 * 11 9 7 23 23 H 1.09001 * 110.01841 * 29.29559 * 15 14 12 24 24 H 1.09003 * 110.48397 * 335.78810 * 16 15 14 25 25 H 1.09004 * 110.48281 * 98.42130 * 16 15 14 26 26 H 1.08999 * 110.72227 * 279.57105 * 17 16 15 27 27 H 1.08997 * 110.92038 * 156.29206 * 17 16 15 28 28 H 1.09001 * 110.48518 * 203.40295 * 18 17 16 29 29 H 1.08997 * 110.59821 * 80.81388 * 18 17 16 30 30 H 1.08998 * 110.03381 * 238.57180 * 19 15 14 31 31 H 1.09003 * 110.03340 * 359.94983 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 16 3.7666 -1.1941 -0.0012 10 8 4.0867 -0.6344 1.2651 11 6 4.1746 -2.9616 -0.0010 12 6 5.6720 -3.1315 -0.0022 13 8 6.3902 -2.1599 -0.0026 14 8 6.2078 -4.3622 -0.0017 15 6 7.6571 -4.4501 -0.0023 16 6 8.1808 -4.5358 -1.4509 17 6 9.3789 -5.5146 -1.3636 18 6 8.8886 -6.5657 -0.3369 19 6 8.1073 -5.7399 0.7059 20 1 -0.4849 0.8401 -0.0004 21 1 3.7560 -3.4310 0.8893 22 1 3.7553 -3.4314 -0.8906 23 1 8.0839 -3.5809 0.4981 24 1 7.4107 -4.9335 -2.1120 25 1 8.5118 -3.5561 -1.7954 26 1 10.2690 -5.0030 -0.9976 27 1 9.5726 -5.9799 -2.3301 28 1 9.7362 -7.0667 0.1305 29 1 8.2334 -7.2931 -0.8161 30 1 8.7531 -5.4967 1.5495 31 1 7.2377 -6.2995 1.0508 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000526868509.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:06 Heat of formation + Delta-G solvation = -165.108747 kcal Electronic energy + Delta-G solvation = -15740.952290 eV Core-core repulsion = 12919.597780 eV Total energy + Delta-G solvation = -2821.354510 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 246.076 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.65624 -38.86243 -36.74768 -36.16805 -34.93632 -31.46868 -29.72666 -28.78218 -28.14417 -23.09151 -21.64283 -21.17663 -20.22746 -18.89801 -17.80704 -17.50433 -17.24561 -17.08329 -16.31751 -15.81034 -15.20970 -14.78899 -14.68120 -14.38291 -14.32093 -13.81960 -13.37452 -13.05228 -12.99686 -12.82964 -12.71074 -12.08974 -11.99799 -11.92782 -11.80147 -11.71829 -11.54669 -11.28626 -11.05885 -10.69010 -9.06989 -8.71812 -7.05611 0.93208 1.07167 1.23204 1.31706 1.49859 1.85564 2.14049 2.68329 2.76234 3.52214 3.54678 3.58655 3.71213 3.94567 4.25646 4.33363 4.44434 4.46961 4.56031 4.57919 4.73816 4.87952 4.97001 5.04103 5.18802 5.20956 5.42405 5.48933 5.54853 6.13577 6.62900 6.79073 8.41897 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.062196 B = 0.005055 C = 0.004919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 450.082297 B = 5537.219686 C = 5690.761989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.086 3.914 3 Si 0.853 3.147 4 H -0.202 1.202 5 H -0.257 1.257 6 H -0.233 1.233 7 C -0.850 4.850 8 H 0.070 0.930 9 S 1.371 4.629 10 O -0.956 6.956 11 C -0.459 4.459 12 C 0.496 3.504 13 O -0.530 6.530 14 O -0.350 6.350 15 C 0.062 3.938 16 C -0.143 4.143 17 C -0.116 4.116 18 C -0.117 4.117 19 C -0.124 4.124 20 H 0.283 0.717 21 H 0.109 0.891 22 H 0.179 0.821 23 H 0.072 0.928 24 H 0.080 0.920 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.062 -10.790 -6.983 21.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.126 4.126 3 Si 0.670 3.330 4 H -0.124 1.124 5 H -0.181 1.181 6 H -0.156 1.156 7 C -0.990 4.990 8 H 0.089 0.911 9 S 1.571 4.429 10 O -0.951 6.951 11 C -0.591 4.591 12 C 0.340 3.660 13 O -0.420 6.420 14 O -0.267 6.267 15 C 0.008 3.992 16 C -0.180 4.180 17 C -0.153 4.153 18 C -0.154 4.154 19 C -0.162 4.162 20 H 0.093 0.907 21 H 0.128 0.872 22 H 0.196 0.804 23 H 0.090 0.910 24 H 0.099 0.901 25 H 0.090 0.910 26 H 0.096 0.904 27 H 0.108 0.892 28 H 0.107 0.893 29 H 0.093 0.907 30 H 0.105 0.895 31 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 17.794 -9.708 -6.952 21.429 hybrid contribution -1.565 -0.314 2.208 2.724 sum 16.229 -10.022 -4.744 19.655 Atomic orbital electron populations 1.70085 1.08228 1.29950 1.43695 1.25453 0.95253 1.02623 0.89253 0.87025 0.82223 0.80135 0.83619 1.12387 1.18108 1.15565 1.27939 1.11181 0.98768 1.61131 0.91119 1.68897 0.86010 0.81767 1.06264 1.92827 1.84088 1.69267 1.48882 1.27959 0.92557 1.27723 1.10898 1.22825 0.90737 0.81512 0.70908 1.90642 1.63410 1.40930 1.47044 1.86609 1.26139 1.30591 1.83320 1.23916 0.75596 1.00491 0.99202 1.22855 0.99541 1.01360 0.94271 1.22465 0.96448 0.95828 1.00596 1.22357 0.99970 0.97374 0.95734 1.22328 1.00863 0.93868 0.99126 0.90711 0.87232 0.80360 0.91013 0.90147 0.91009 0.90441 0.89217 0.89265 0.90739 0.89540 0.90590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -52.44 13.96 21.45 0.30 -52.14 16 2 C 0.09 4.87 5.47 84.65 0.46 5.33 16 3 Si 0.85 40.10 27.29 68.60 1.87 41.98 16 4 H -0.20 -7.86 7.11 99.48 0.71 -7.16 16 5 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 6 H -0.23 -11.81 5.57 99.48 0.55 -11.26 16 7 C -0.85 -47.46 9.94 67.73 0.67 -46.79 16 8 H 0.07 4.17 8.06 -2.91 -0.02 4.15 16 9 S 1.37 64.26 10.89 -56.49 -0.62 63.65 16 10 O -0.96 -56.28 15.65 -148.98 -2.33 -58.61 16 11 C -0.46 -17.27 6.48 71.24 0.46 -16.80 16 12 C 0.50 18.32 7.97 71.24 0.57 18.89 16 13 O -0.53 -21.91 15.09 21.97 0.33 -21.58 16 14 O -0.35 -10.99 9.79 -51.38 -0.50 -11.50 16 15 C 0.06 1.59 3.23 31.32 0.10 1.69 16 16 C -0.14 -2.89 6.57 31.70 0.21 -2.68 16 17 C -0.12 -1.60 6.91 31.91 0.22 -1.37 16 18 C -0.12 -1.58 6.83 31.67 0.22 -1.36 16 19 C -0.12 -2.36 6.62 31.32 0.21 -2.15 16 20 H 0.28 15.27 8.31 -92.71 -0.77 14.50 16 21 H 0.11 4.30 8.14 -2.39 -0.02 4.28 16 22 H 0.18 5.27 8.14 -2.39 -0.02 5.25 16 23 H 0.07 2.06 7.17 -2.39 -0.02 2.04 16 24 H 0.08 1.62 8.08 -2.39 -0.02 1.60 16 25 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 26 H 0.08 0.96 8.14 -2.39 -0.02 0.95 16 27 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.08 1.53 7.96 -2.39 -0.02 1.51 16 Total: -1.00 -76.13 277.20 3.14 -73.00 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: 0.96 Total: 10.45 kcal Atomic # 6 Polarization: -48.37 SS G_CDS: 3.12 Total: -45.25 kcal Atomic # 7 Polarization: -52.44 SS G_CDS: 0.30 Total: -52.14 kcal Atomic # 8 Polarization: -89.18 SS G_CDS: -2.50 Total: -91.68 kcal Atomic # 14 Polarization: 40.10 SS G_CDS: 1.87 Total: 41.98 kcal Atomic # 16 Polarization: 64.26 SS G_CDS: -0.62 Total: 63.65 kcal Total: -76.13 3.14 -73.00 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000526868509.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.111 kcal (2) G-P(sol) polarization free energy of solvation -76.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds