Wall clock time and date at job start Mon Mar 30 2020 04:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30907 * 1 3 3 Si 1.86800 * 119.99606 * 2 1 4 4 H 1.48499 * 109.47407 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47400 * 300.00589 * 3 2 1 6 6 H 1.48502 * 109.47173 * 60.00449 * 3 2 1 7 7 C 1.39980 * 120.00605 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00531 * 197.41810 * 7 2 1 9 9 C 1.40424 * 120.00290 * 17.42381 * 7 2 1 10 10 C 1.40843 * 121.22841 * 23.51818 * 9 7 2 11 11 N 1.31853 * 119.82657 * 180.02562 * 10 9 7 12 12 C 1.32863 * 122.64243 * 359.97438 * 11 10 9 13 13 N 1.34680 * 131.05076 * 179.97438 * 12 11 10 14 14 C 1.30700 * 110.28514 * 180.02562 * 13 12 11 15 15 C 1.50700 * 125.38700 * 180.02562 * 14 13 12 16 16 C 1.52998 * 117.49953 * 43.71088 * 15 14 13 17 17 C 1.53004 * 117.49439 * 335.05192 * 15 14 13 18 18 N 1.35895 * 109.23143 * 359.97438 * 14 13 12 19 19 H 0.96994 * 126.76295 * 180.02562 * 18 14 13 20 20 N 1.36932 * 121.50171 * 0.30720 * 12 11 10 21 21 C 1.34732 * 120.69054 * 359.37954 * 20 12 11 22 22 O 1.21749 * 121.09729 * 180.29867 * 21 20 12 23 23 H 0.96995 * 120.00758 * 359.97438 * 1 2 3 24 24 H 1.07997 * 120.08925 * 0.02562 * 10 9 7 25 25 H 1.09002 * 115.54993 * 189.39129 * 15 14 13 26 26 H 1.08997 * 117.50271 * 0.02562 * 16 15 14 27 27 H 1.09000 * 117.49673 * 145.02520 * 16 15 14 28 28 H 1.08999 * 117.49705 * 214.97594 * 17 15 14 29 29 H 1.08994 * 117.50177 * 359.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 3.7030 1.3466 -0.0006 5 1 1.8841 2.3966 -1.2124 6 1 1.8842 2.3965 1.2126 7 6 2.0091 -1.2122 -0.0005 8 1 3.0520 -1.2337 0.2794 9 6 1.3555 -2.4003 -0.3652 10 6 0.2057 -2.3812 -1.1784 11 7 -0.3864 -3.5136 -1.5036 12 6 0.0568 -4.6974 -1.0944 13 7 -0.4072 -5.9415 -1.3194 14 6 0.3464 -6.8223 -0.7155 15 6 0.1369 -8.3144 -0.7415 16 6 -0.2124 -8.9555 -2.0860 17 6 -1.2826 -8.8240 -0.9994 18 7 1.3495 -6.1798 -0.0615 19 1 2.0526 -6.5881 0.4675 20 7 1.1639 -4.8101 -0.2965 21 6 1.8480 -3.7153 0.0891 22 8 2.8365 -3.8074 0.7939 23 1 -0.4851 0.8399 0.0004 24 1 -0.1899 -1.4416 -1.5348 25 1 0.7612 -8.8888 -0.0570 26 1 -0.2903 -8.2981 -2.9520 27 1 0.1818 -9.9518 -2.2860 28 1 -1.5918 -9.7339 -0.4851 29 1 -2.0648 -8.0801 -1.1499 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000527308109.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:38 Heat of formation + Delta-G solvation = 93.742660 kcal Electronic energy + Delta-G solvation = -17083.957307 eV Core-core repulsion = 14202.968987 eV Total energy + Delta-G solvation = -2880.988320 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.46474 -40.09198 -38.19863 -37.65404 -35.88725 -34.09913 -32.37701 -31.48181 -27.63511 -25.71010 -24.65655 -23.49581 -23.17035 -21.47909 -20.46500 -19.20256 -18.45522 -18.15304 -17.57271 -16.95704 -16.71282 -15.82573 -15.44395 -15.09206 -14.99441 -14.26293 -13.75586 -13.40554 -13.24114 -13.13837 -12.86239 -12.32279 -12.18043 -12.14496 -11.95638 -11.41917 -11.38015 -11.09637 -11.01615 -10.56719 -10.38078 -9.14792 -8.89468 -6.25018 -0.20566 0.28384 0.70651 1.33456 1.38696 1.56383 1.68652 2.13978 2.49214 2.64162 2.86872 3.04796 3.30225 3.60737 3.77783 3.87734 4.10333 4.23345 4.57007 4.65704 4.89055 4.91221 4.99548 5.10340 5.21549 5.40144 5.52148 5.65891 6.03767 6.25600 6.30939 6.45097 6.56838 7.16067 7.52932 8.02988 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.054914 B = 0.005702 C = 0.005297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.766262 B = 4909.560418 C = 5284.641229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.026 3.974 3 Si 1.006 2.994 4 H -0.260 1.260 5 H -0.249 1.249 6 H -0.257 1.257 7 C -0.401 4.401 8 H 0.083 0.917 9 C -0.049 4.049 10 C -0.009 4.009 11 N -0.475 5.475 12 C 0.333 3.667 13 N -0.512 5.512 14 C 0.384 3.616 15 C -0.109 4.109 16 C -0.136 4.136 17 C -0.139 4.139 18 N -0.509 5.509 19 H 0.455 0.545 20 N -0.360 5.360 21 C 0.476 3.524 22 O -0.606 6.606 23 H 0.306 0.694 24 H 0.167 0.833 25 H 0.171 0.829 26 H 0.083 0.917 27 H 0.143 0.857 28 H 0.141 0.859 29 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.539 -12.135 -1.454 12.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.192 4.192 3 Si 0.823 3.177 4 H -0.183 1.183 5 H -0.173 1.173 6 H -0.181 1.181 7 C -0.431 4.431 8 H 0.101 0.899 9 C -0.061 4.061 10 C -0.160 4.160 11 N -0.198 5.198 12 C -0.011 4.011 13 N -0.243 5.243 14 C 0.112 3.888 15 C -0.130 4.130 16 C -0.174 4.174 17 C -0.177 4.177 18 N -0.243 5.243 19 H 0.304 0.696 20 N -0.174 5.174 21 C 0.277 3.723 22 O -0.489 6.489 23 H 0.118 0.882 24 H 0.184 0.816 25 H 0.188 0.812 26 H 0.102 0.898 27 H 0.161 0.839 28 H 0.159 0.841 29 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.468 -11.746 -1.940 11.996 hybrid contribution 1.908 0.958 1.470 2.592 sum 0.440 -10.788 -0.470 10.808 Atomic orbital electron populations 1.69780 1.09159 1.32546 1.29792 1.27079 0.95860 1.04875 0.91422 0.84803 0.78856 0.74051 0.79951 1.18322 1.17312 1.18137 1.19581 0.97988 0.90652 1.34866 0.89857 1.20661 0.97746 0.89280 0.98367 1.22442 0.98288 0.93376 1.01935 1.66630 1.31497 0.95248 1.26410 1.21438 0.88008 0.93154 0.98487 1.70143 1.29835 0.95548 1.28793 1.23815 0.82524 0.95917 0.86496 1.20813 1.04945 0.81090 1.06148 1.23222 1.01241 1.02611 0.90345 1.23209 0.89547 1.03303 1.01658 1.44970 1.31892 0.93308 1.54124 0.69608 1.48356 1.28077 0.97573 1.43376 1.19983 0.85801 0.82746 0.83814 1.90617 1.29407 1.85251 1.43634 0.88201 0.81608 0.81150 0.89811 0.83890 0.84088 0.89650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -39.02 10.93 21.84 0.24 -38.78 15 2 C 0.03 1.28 5.18 85.25 0.44 1.72 15 3 Si 1.01 36.02 29.60 68.60 2.03 38.05 15 4 H -0.26 -9.39 7.11 99.48 0.71 -8.68 15 5 H -0.25 -8.24 7.11 99.48 0.71 -7.54 15 6 H -0.26 -8.67 7.11 99.48 0.71 -7.96 15 7 C -0.40 -22.13 8.85 23.22 0.21 -21.93 15 8 H 0.08 4.63 7.82 -2.91 -0.02 4.60 15 9 C -0.05 -2.87 5.77 -19.64 -0.11 -2.98 15 10 C -0.01 -0.53 9.97 85.33 0.85 0.32 15 11 N -0.47 -26.40 10.34 -195.78 -2.03 -28.42 15 12 C 0.33 17.25 8.96 261.05 2.34 19.58 15 13 N -0.51 -22.01 10.98 -188.34 -2.07 -24.08 15 14 C 0.38 12.71 7.69 137.80 1.06 13.77 15 15 C -0.11 -2.03 6.33 -11.54 -0.07 -2.11 15 16 C -0.14 -2.08 10.24 30.62 0.31 -1.76 15 17 C -0.14 -2.22 10.14 30.62 0.31 -1.91 15 18 N -0.51 -19.00 7.47 -49.97 -0.37 -19.38 15 19 H 0.46 13.60 8.96 -213.26 -1.91 11.69 15 20 N -0.36 -18.18 3.84 -316.01 -1.21 -19.39 15 21 C 0.48 27.29 7.98 86.72 0.69 27.98 15 22 O -0.61 -36.14 17.54 -4.50 -0.08 -36.22 15 23 H 0.31 13.14 8.30 -92.71 -0.77 12.37 15 24 H 0.17 9.26 6.16 -2.91 -0.02 9.24 15 25 H 0.17 1.77 8.14 -2.39 -0.02 1.75 15 26 H 0.08 1.74 8.14 -2.39 -0.02 1.72 15 27 H 0.14 1.13 8.14 -2.39 -0.02 1.11 15 28 H 0.14 1.23 8.14 -2.39 -0.02 1.21 15 29 H 0.08 1.89 8.05 -2.39 -0.02 1.87 15 Total: -1.00 -76.00 264.98 1.84 -74.16 By element: Atomic # 1 Polarization: 22.07 SS G_CDS: -0.70 Total: 21.37 kcal Atomic # 6 Polarization: 26.66 SS G_CDS: 6.03 Total: 32.69 kcal Atomic # 7 Polarization: -124.61 SS G_CDS: -5.44 Total: -130.05 kcal Atomic # 8 Polarization: -36.14 SS G_CDS: -0.08 Total: -36.22 kcal Atomic # 14 Polarization: 36.02 SS G_CDS: 2.03 Total: 38.05 kcal Total: -76.00 1.84 -74.16 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527308109.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.907 kcal (2) G-P(sol) polarization free energy of solvation -76.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds