Wall clock time and date at job start Mon Mar 30 2020 03:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30902 * 1 3 3 Si 1.86802 * 119.99936 * 2 1 4 4 H 1.48505 * 109.46963 * 239.99945 * 3 2 1 5 5 H 1.48500 * 109.47071 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47333 * 120.00033 * 3 2 1 7 7 C 1.39886 * 120.00065 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00031 * 161.97234 * 7 2 1 9 9 C 1.41022 * 119.99862 * 341.96535 * 7 2 1 10 10 C 1.41597 * 120.27270 * 317.28464 * 9 7 2 11 11 N 1.38871 * 120.15608 * 359.95046 * 10 9 7 12 12 C 1.38693 * 119.67891 * 179.97438 * 10 9 7 13 13 C 1.38102 * 120.21567 * 359.97438 * 12 10 9 14 14 C 1.39557 * 120.55509 * 0.25830 * 13 12 10 15 15 N 1.39851 * 119.84558 * 179.74377 * 14 13 12 16 16 C 1.38044 * 120.31557 * 359.48099 * 14 13 12 17 17 C 1.50699 * 120.11474 * 180.25335 * 16 14 13 18 18 F 1.39903 * 109.47179 * 276.14158 * 17 16 14 19 19 F 1.39898 * 109.47381 * 36.13707 * 17 16 14 20 20 F 1.39905 * 109.47126 * 156.14056 * 17 16 14 21 21 H 0.97000 * 119.99900 * 5.07227 * 1 2 3 22 22 H 0.97001 * 119.99550 * 168.86120 * 11 10 9 23 23 H 0.96998 * 120.00631 * 348.86999 * 11 10 9 24 24 H 1.07990 * 119.88976 * 179.97438 * 12 10 9 25 25 H 1.08007 * 119.72250 * 179.97438 * 13 12 10 26 26 H 0.97004 * 119.99352 * 11.13104 * 15 14 13 27 27 H 0.96998 * 120.00673 * 191.13100 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 3.0968 1.6964 -1.2125 5 1 1.2780 2.7465 -0.0006 6 1 3.0968 1.6965 1.2125 7 6 2.0085 -1.2114 0.0005 8 1 3.0487 -1.2345 -0.2889 9 6 1.3553 -2.4025 0.3792 10 6 0.4881 -2.4163 1.4984 11 7 0.2764 -1.2559 2.2312 12 6 -0.1483 -3.5945 1.8596 13 6 0.0615 -4.7491 1.1316 14 6 0.9179 -4.7473 0.0297 15 7 1.1237 -5.9264 -0.6937 16 6 1.5588 -3.5860 -0.3528 17 6 2.4782 -3.5879 -1.5468 18 9 3.7480 -4.0272 -1.1569 19 9 1.9684 -4.4465 -2.5267 20 9 2.5719 -2.2919 -2.0653 21 1 -0.4850 0.8368 -0.0743 22 1 -0.4333 -1.2220 2.8916 23 1 0.8380 -0.4791 2.0827 24 1 -0.8101 -3.6090 2.7128 25 1 -0.4380 -5.6623 1.4201 26 1 0.5569 -6.6975 -0.5357 27 1 1.8332 -5.9731 -1.3535 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575720776.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:58 Heat of formation + Delta-G solvation = -118.771047 kcal Electronic energy + Delta-G solvation = -18641.969447 eV Core-core repulsion = 15177.616350 eV Total energy + Delta-G solvation = -3464.353097 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.01523 -46.59224 -46.34851 -38.13826 -35.00856 -32.94610 -31.33842 -30.20395 -27.17481 -24.85288 -24.03084 -20.92336 -20.37280 -17.61264 -17.44072 -17.31553 -16.72609 -15.96792 -15.26242 -14.86459 -14.58896 -14.23998 -13.40429 -13.36705 -12.95626 -12.88637 -12.69848 -12.56926 -12.44540 -11.76353 -11.65517 -11.48068 -11.27735 -10.92123 -10.82580 -10.38565 -10.08898 -9.48230 -9.15737 -7.92219 -7.58709 -6.76350 -5.66446 -4.31337 2.58285 3.03382 3.06090 3.10416 3.26325 3.93075 3.98350 4.59002 4.88029 5.22636 5.29351 5.42117 5.60974 5.83085 6.28757 6.52206 6.90263 7.06740 7.19036 7.40327 7.52800 7.75681 7.83771 8.31534 8.47518 8.57318 8.73628 8.79942 9.19593 9.32242 10.20182 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.023738 B = 0.012278 C = 0.008873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.261355 B = 2279.977142 C = 3154.871759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.780 5.780 2 C 0.072 3.928 3 Si 0.898 3.102 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.263 1.263 7 C -0.466 4.466 8 H 0.085 0.915 9 C 0.140 3.860 10 C 0.146 3.854 11 N -0.860 5.860 12 C -0.143 4.143 13 C -0.250 4.250 14 C 0.222 3.778 15 N -0.897 5.897 16 C -0.316 4.316 17 C 0.521 3.479 18 F -0.204 7.204 19 F -0.199 7.199 20 F -0.165 7.165 21 H 0.280 0.720 22 H 0.372 0.628 23 H 0.391 0.609 24 H 0.094 0.906 25 H 0.095 0.905 26 H 0.384 0.616 27 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.115 -3.016 0.672 3.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.405 5.405 2 C -0.146 4.146 3 Si 0.723 3.277 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.496 4.496 8 H 0.103 0.897 9 C 0.134 3.866 10 C 0.041 3.959 11 N -0.401 5.401 12 C -0.168 4.168 13 C -0.274 4.274 14 C 0.120 3.880 15 N -0.442 5.442 16 C -0.324 4.324 17 C 0.467 3.533 18 F -0.186 7.186 19 F -0.181 7.181 20 F -0.146 7.146 21 H 0.090 0.910 22 H 0.197 0.803 23 H 0.221 0.779 24 H 0.112 0.888 25 H 0.113 0.887 26 H 0.211 0.789 27 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 0.966 -2.796 0.671 3.033 hybrid contribution 0.336 0.769 -0.358 0.912 sum 1.301 -2.027 0.313 2.429 Atomic orbital electron populations 1.69892 1.07102 1.29308 1.34199 1.25733 0.94664 1.00559 0.93604 0.86501 0.80336 0.80624 0.80254 1.18897 1.20420 1.18802 1.19335 0.98635 0.90725 1.40946 0.89692 1.16613 0.90852 0.90822 0.88332 1.17610 0.99870 0.86276 0.92157 1.41858 1.39473 1.14305 1.44415 1.19909 1.03790 0.92102 1.01044 1.19531 1.09555 0.97834 1.00489 1.16915 0.95079 0.84641 0.91391 1.42638 1.40847 1.13369 1.47304 1.19065 1.14631 0.96870 1.01800 1.18358 0.78784 0.72865 0.83304 1.93114 1.44390 1.89884 1.91164 1.92958 1.87407 1.71218 1.66477 1.93197 1.96135 1.37249 1.88050 0.90953 0.80290 0.77850 0.88835 0.88722 0.78926 0.78259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.22 11.26 55.55 0.63 -18.59 15 2 C 0.07 1.73 3.43 -17.33 -0.06 1.67 15 3 Si 0.90 18.20 29.60 -169.99 -5.03 13.17 15 4 H -0.26 -5.49 7.11 56.52 0.40 -5.09 15 5 H -0.28 -5.51 7.11 56.52 0.40 -5.11 15 6 H -0.26 -5.22 7.11 56.52 0.40 -4.81 15 7 C -0.47 -11.93 6.31 -37.91 -0.24 -12.17 15 8 H 0.09 2.20 6.90 -52.49 -0.36 1.83 15 9 C 0.14 3.60 5.30 -106.66 -0.57 3.03 15 10 C 0.15 3.49 6.26 -83.22 -0.52 2.97 15 11 N -0.86 -18.45 7.56 32.75 0.25 -18.20 15 12 C -0.14 -3.17 9.87 -39.46 -0.39 -3.56 15 13 C -0.25 -5.40 9.89 -39.14 -0.39 -5.79 15 14 C 0.22 4.98 6.65 -83.78 -0.56 4.42 15 15 N -0.90 -16.53 8.53 32.41 0.28 -16.25 15 16 C -0.32 -7.75 5.51 -103.79 -0.57 -8.32 15 17 C 0.52 12.02 2.84 36.01 0.10 12.12 15 18 F -0.20 -4.49 17.30 2.25 0.04 -4.45 15 19 F -0.20 -4.22 14.46 2.25 0.03 -4.19 15 20 F -0.17 -4.05 13.87 2.25 0.03 -4.01 15 21 H 0.28 6.40 8.30 -40.82 -0.34 6.06 15 22 H 0.37 6.92 8.85 -40.82 -0.36 6.56 15 23 H 0.39 8.58 5.99 -40.82 -0.24 8.34 15 24 H 0.09 1.83 8.06 -52.49 -0.42 1.41 15 25 H 0.09 1.80 8.06 -52.48 -0.42 1.38 15 26 H 0.38 5.93 8.86 -40.82 -0.36 5.57 15 27 H 0.39 6.96 6.18 -40.82 -0.25 6.71 15 LS Contribution 241.15 15.07 3.63 3.63 Total: -1.00 -26.80 241.15 -4.90 -31.69 By element: Atomic # 1 Polarization: 24.40 SS G_CDS: -1.56 Total: 22.84 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: -3.19 Total: -5.64 kcal Atomic # 7 Polarization: -54.20 SS G_CDS: 1.15 Total: -53.05 kcal Atomic # 9 Polarization: -12.75 SS G_CDS: 0.10 Total: -12.65 kcal Atomic # 14 Polarization: 18.20 SS G_CDS: -5.03 Total: 13.17 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -26.80 -4.90 -31.69 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575720776.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.077 kcal (2) G-P(sol) polarization free energy of solvation -26.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds