Wall clock time and date at job start Mon Mar 30 2020 03:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30962 * 1 3 3 Si 1.86800 * 120.00524 * 2 1 4 4 H 1.48505 * 109.46856 * 273.92689 * 3 2 1 5 5 H 1.48495 * 109.46890 * 33.92321 * 3 2 1 6 6 H 1.48497 * 109.47456 * 153.92714 * 3 2 1 7 7 C 1.39844 * 119.99741 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99784 * 346.89092 * 7 2 1 9 9 C 1.40889 * 119.99707 * 166.89006 * 7 2 1 10 10 C 1.41709 * 120.21843 * 309.69444 * 9 7 2 11 11 N 1.38842 * 120.24068 * 0.02692 * 10 9 7 12 12 C 1.38298 * 119.52106 * 180.29224 * 10 9 7 13 13 C 1.39114 * 119.95948 * 359.73845 * 12 10 9 14 14 N 1.38956 * 119.78155 * 180.02562 * 13 12 10 15 15 C 1.39739 * 120.43446 * 359.97438 * 13 12 10 16 16 C 1.36234 * 120.49072 * 0.02562 * 15 13 12 17 17 C 1.50704 * 119.99054 * 179.97438 * 16 15 13 18 18 F 1.39896 * 109.46921 * 359.97438 * 17 16 15 19 19 F 1.39897 * 109.47039 * 239.99928 * 17 16 15 20 20 F 1.39903 * 109.47188 * 119.99765 * 17 16 15 21 21 H 0.97004 * 119.99421 * 359.97438 * 1 2 3 22 22 H 0.97001 * 119.99772 * 171.60946 * 11 10 9 23 23 H 0.96997 * 120.00074 * 351.60434 * 11 10 9 24 24 H 1.07998 * 120.01988 * 179.74901 * 12 10 9 25 25 H 0.97003 * 119.99872 * 179.97438 * 14 13 12 26 26 H 0.97000 * 120.00102 * 359.96808 * 14 13 12 27 27 H 1.08002 * 119.75754 * 179.97438 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3096 0.0000 0.0000 3 14 2.2438 1.6177 0.0000 4 1 2.4082 2.0942 -1.3969 5 1 1.4852 2.6272 0.7813 6 1 3.5803 1.4175 0.6153 7 6 2.0088 -1.2111 -0.0005 8 1 1.4898 -2.1342 0.2112 9 6 3.3901 -1.2269 -0.2773 10 6 3.8955 -0.5643 -1.4235 11 7 3.0331 0.1054 -2.2811 12 6 5.2533 -0.5941 -1.6846 13 6 6.1121 -1.2668 -0.8214 14 7 7.4758 -1.2940 -1.0870 15 6 5.6126 -1.9146 0.3116 16 6 4.2783 -1.8966 0.5861 17 6 3.7517 -2.5994 1.8109 18 9 4.8143 -3.1924 2.5012 19 9 2.8380 -3.5862 1.4255 20 9 3.1141 -1.6725 2.6424 21 1 -0.4849 0.8401 0.0004 22 1 3.3902 0.6580 -2.9939 23 1 2.0735 0.0206 -2.1676 24 1 5.6466 -0.0953 -2.5580 25 1 8.0775 -1.7618 -0.4871 26 1 7.8259 -0.8452 -1.8724 27 1 6.2892 -2.4339 0.9741 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575720875.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:44 Heat of formation + Delta-G solvation = -125.935317 kcal Electronic energy + Delta-G solvation = -18477.317540 eV Core-core repulsion = 15012.653777 eV Total energy + Delta-G solvation = -3464.663763 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.01836 -46.60750 -46.37333 -38.64613 -35.17220 -33.13459 -32.69202 -29.17343 -28.41018 -25.41038 -23.72818 -20.89800 -20.54302 -17.93437 -17.42499 -17.30600 -17.14794 -16.27241 -15.53745 -15.16435 -14.56592 -14.14310 -13.45767 -13.40378 -13.11749 -13.08557 -12.83192 -12.63940 -12.59752 -12.55641 -12.36941 -11.49540 -11.37820 -11.16859 -10.57831 -10.20833 -9.93453 -9.82741 -8.98878 -8.93029 -7.11757 -6.71710 -6.38332 -4.27552 2.25466 2.70255 3.19622 3.27755 3.40033 3.86994 4.11139 4.49904 4.55819 4.90034 5.07911 5.09411 5.40857 5.70349 5.94133 6.24744 6.55084 6.58688 6.83224 7.16253 7.33924 7.43739 7.60734 8.22236 8.29010 8.43254 8.50751 8.68275 8.78432 8.94745 10.36834 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.018934 B = 0.014644 C = 0.009626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.454330 B = 1911.642555 C = 2908.085596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.082 3.918 3 Si 0.904 3.096 4 H -0.264 1.264 5 H -0.298 1.298 6 H -0.255 1.255 7 C -0.482 4.482 8 H 0.096 0.904 9 C 0.043 3.957 10 C 0.188 3.812 11 N -0.871 5.871 12 C -0.233 4.233 13 C 0.172 3.828 14 N -0.888 5.888 15 C -0.184 4.184 16 C -0.190 4.190 17 C 0.522 3.478 18 F -0.201 7.201 19 F -0.185 7.185 20 F -0.178 7.178 21 H 0.278 0.722 22 H 0.384 0.616 23 H 0.406 0.594 24 H 0.103 0.897 25 H 0.388 0.612 26 H 0.387 0.613 27 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.835 0.209 -2.073 9.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.189 1.189 5 H -0.226 1.226 6 H -0.179 1.179 7 C -0.514 4.514 8 H 0.113 0.887 9 C 0.037 3.963 10 C 0.084 3.916 11 N -0.414 5.414 12 C -0.261 4.261 13 C 0.070 3.930 14 N -0.430 5.430 15 C -0.209 4.209 16 C -0.194 4.194 17 C 0.469 3.531 18 F -0.182 7.182 19 F -0.166 7.166 20 F -0.159 7.159 21 H 0.088 0.912 22 H 0.211 0.789 23 H 0.239 0.761 24 H 0.121 0.879 25 H 0.215 0.785 26 H 0.213 0.787 27 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 8.465 0.265 -1.985 8.699 hybrid contribution 0.351 0.828 -0.080 0.902 sum 8.816 1.092 -2.065 9.120 Atomic orbital electron populations 1.69739 1.07542 1.29186 1.39681 1.25859 0.94639 1.00537 0.92131 0.86531 0.81003 0.80780 0.78625 1.18906 1.22628 1.17912 1.18991 0.90812 0.96021 1.45554 0.88652 1.16875 0.93802 0.95505 0.90168 1.17706 0.88862 0.95417 0.89651 1.42560 1.08996 1.54587 1.35243 1.19737 0.91982 1.11502 1.02909 1.16916 0.83628 0.97788 0.94658 1.41935 1.04769 1.64799 1.31464 1.19453 0.94151 1.07799 0.99453 1.19225 0.93776 1.10900 0.95535 1.18171 0.74473 0.76587 0.83908 1.93038 1.57795 1.85336 1.82068 1.93127 1.68428 1.63904 1.91140 1.93155 1.82741 1.66031 1.73956 0.91169 0.78874 0.76120 0.87885 0.78493 0.78654 0.87465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -22.41 13.94 55.54 0.77 -21.64 15 2 C 0.08 2.14 4.27 -17.32 -0.07 2.06 15 3 Si 0.90 20.89 24.31 -169.99 -4.13 16.76 15 4 H -0.26 -5.50 6.27 56.52 0.35 -5.15 15 5 H -0.30 -6.96 7.11 56.52 0.40 -6.56 15 6 H -0.26 -6.28 7.10 56.52 0.40 -5.88 15 7 C -0.48 -12.88 7.40 -37.98 -0.28 -13.16 15 8 H 0.10 2.79 6.95 -52.49 -0.36 2.43 15 9 C 0.04 1.06 4.51 -106.59 -0.48 0.58 15 10 C 0.19 4.13 5.24 -83.34 -0.44 3.70 15 11 N -0.87 -17.14 6.07 32.69 0.20 -16.94 15 12 C -0.23 -4.55 9.71 -39.23 -0.38 -4.94 15 13 C 0.17 3.25 6.76 -83.75 -0.57 2.68 15 14 N -0.89 -12.58 9.05 32.47 0.29 -12.28 15 15 C -0.18 -3.80 9.20 -39.74 -0.37 -4.16 15 16 C -0.19 -4.44 5.38 -104.37 -0.56 -5.00 15 17 C 0.52 11.95 2.89 36.01 0.10 12.06 15 18 F -0.20 -4.11 15.94 2.25 0.04 -4.07 15 19 F -0.18 -4.33 15.85 2.25 0.04 -4.30 15 20 F -0.18 -4.28 16.56 2.25 0.04 -4.24 15 21 H 0.28 6.89 8.30 -40.82 -0.34 6.55 15 22 H 0.38 6.25 8.84 -40.82 -0.36 5.89 15 23 H 0.41 8.56 5.94 -40.82 -0.24 8.32 15 24 H 0.10 1.72 8.06 -52.49 -0.42 1.30 15 25 H 0.39 4.73 8.83 -40.82 -0.36 4.37 15 26 H 0.39 4.59 8.83 -40.82 -0.36 4.23 15 27 H 0.11 2.01 7.09 -52.49 -0.37 1.63 15 LS Contribution 240.40 15.07 3.62 3.62 Total: -1.00 -28.29 240.40 -3.84 -32.13 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: -1.67 Total: 17.13 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: -3.04 Total: -6.17 kcal Atomic # 7 Polarization: -52.12 SS G_CDS: 1.27 Total: -50.86 kcal Atomic # 9 Polarization: -12.72 SS G_CDS: 0.11 Total: -12.61 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.13 Total: 16.76 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -28.29 -3.84 -32.13 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575720875.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.800 kcal (2) G-P(sol) polarization free energy of solvation -28.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds