Wall clock time and date at job start Mon Mar 30 2020 03:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30962 * 1 3 3 Si 1.86800 * 120.00524 * 2 1 4 4 H 1.48505 * 109.46856 * 273.92689 * 3 2 1 5 5 H 1.48495 * 109.46890 * 33.92321 * 3 2 1 6 6 H 1.48497 * 109.47456 * 153.92714 * 3 2 1 7 7 C 1.39844 * 119.99741 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99784 * 346.89092 * 7 2 1 9 9 C 1.40889 * 119.99707 * 166.89006 * 7 2 1 10 10 C 1.41709 * 120.21843 * 309.69444 * 9 7 2 11 11 N 1.38842 * 120.24068 * 0.02692 * 10 9 7 12 12 C 1.38298 * 119.52106 * 180.29224 * 10 9 7 13 13 C 1.39114 * 119.95948 * 359.73845 * 12 10 9 14 14 N 1.38956 * 119.78155 * 180.02562 * 13 12 10 15 15 C 1.39739 * 120.43446 * 359.97438 * 13 12 10 16 16 C 1.36234 * 120.49072 * 0.02562 * 15 13 12 17 17 C 1.50704 * 119.99054 * 179.97438 * 16 15 13 18 18 F 1.39896 * 109.46921 * 359.97438 * 17 16 15 19 19 F 1.39897 * 109.47039 * 239.99928 * 17 16 15 20 20 F 1.39903 * 109.47188 * 119.99765 * 17 16 15 21 21 H 0.97004 * 119.99421 * 359.97438 * 1 2 3 22 22 H 0.97001 * 119.99772 * 171.60946 * 11 10 9 23 23 H 0.96997 * 120.00074 * 351.60434 * 11 10 9 24 24 H 1.07998 * 120.01988 * 179.74901 * 12 10 9 25 25 H 0.97003 * 119.99872 * 179.97438 * 14 13 12 26 26 H 0.97000 * 120.00102 * 359.96808 * 14 13 12 27 27 H 1.08002 * 119.75754 * 179.97438 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3096 0.0000 0.0000 3 14 2.2438 1.6177 0.0000 4 1 2.4082 2.0942 -1.3969 5 1 1.4852 2.6272 0.7813 6 1 3.5803 1.4175 0.6153 7 6 2.0088 -1.2111 -0.0005 8 1 1.4898 -2.1342 0.2112 9 6 3.3901 -1.2269 -0.2773 10 6 3.8955 -0.5643 -1.4235 11 7 3.0331 0.1054 -2.2811 12 6 5.2533 -0.5941 -1.6846 13 6 6.1121 -1.2668 -0.8214 14 7 7.4758 -1.2940 -1.0870 15 6 5.6126 -1.9146 0.3116 16 6 4.2783 -1.8966 0.5861 17 6 3.7517 -2.5994 1.8109 18 9 4.8143 -3.1924 2.5012 19 9 2.8380 -3.5862 1.4255 20 9 3.1141 -1.6725 2.6424 21 1 -0.4849 0.8401 0.0004 22 1 3.3902 0.6580 -2.9939 23 1 2.0735 0.0206 -2.1676 24 1 5.6466 -0.0953 -2.5580 25 1 8.0775 -1.7618 -0.4871 26 1 7.8259 -0.8452 -1.8724 27 1 6.2892 -2.4339 0.9741 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575720875.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:43 Heat of formation + Delta-G solvation = -146.858294 kcal Electronic energy + Delta-G solvation = -18478.224828 eV Core-core repulsion = 15012.653777 eV Total energy + Delta-G solvation = -3465.571051 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -50.84674 -48.39809 -48.26622 -40.28715 -36.73249 -34.84461 -34.42142 -30.76215 -30.11296 -27.13466 -25.49798 -22.58284 -22.22602 -19.72769 -19.18101 -19.16082 -18.88134 -17.79692 -17.11016 -16.87800 -16.08779 -15.80366 -15.30341 -15.18125 -14.91105 -14.75560 -14.67726 -14.51329 -14.43547 -14.25896 -14.00773 -13.19123 -13.06240 -12.93138 -12.31513 -12.00172 -11.66882 -11.58939 -10.81598 -10.59919 -8.63715 -8.56864 -8.06979 -6.19163 0.56051 1.03188 1.36392 1.46652 1.54758 2.06063 2.25077 2.76184 3.06082 3.23931 3.37701 3.38638 3.72056 3.86716 4.43090 4.68555 4.87960 5.05826 5.19585 5.50527 5.64269 5.78843 5.93827 6.36304 6.66072 6.81246 6.96124 7.01200 7.27350 7.33375 8.51999 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.018934 B = 0.014644 C = 0.009626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.454330 B = 1911.642555 C = 2908.085596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.048 3.952 3 Si 0.954 3.046 4 H -0.226 1.226 5 H -0.305 1.305 6 H -0.275 1.275 7 C -0.497 4.497 8 H 0.049 0.951 9 C -0.002 4.002 10 C 0.188 3.812 11 N -0.865 5.865 12 C -0.237 4.237 13 C 0.200 3.800 14 N -0.866 5.866 15 C -0.204 4.204 16 C -0.191 4.191 17 C 0.519 3.481 18 F -0.185 7.185 19 F -0.193 7.193 20 F -0.189 7.189 21 H 0.282 0.718 22 H 0.403 0.597 23 H 0.399 0.601 24 H 0.141 0.859 25 H 0.403 0.597 26 H 0.405 0.595 27 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.122 1.178 -3.501 12.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.160 4.160 3 Si 0.779 3.221 4 H -0.149 1.149 5 H -0.234 1.234 6 H -0.200 1.200 7 C -0.531 4.531 8 H 0.067 0.933 9 C -0.009 4.009 10 C 0.082 3.918 11 N -0.408 5.408 12 C -0.265 4.265 13 C 0.095 3.905 14 N -0.408 5.408 15 C -0.230 4.230 16 C -0.195 4.195 17 C 0.465 3.535 18 F -0.166 7.166 19 F -0.174 7.174 20 F -0.171 7.171 21 H 0.092 0.908 22 H 0.233 0.767 23 H 0.231 0.769 24 H 0.159 0.841 25 H 0.232 0.768 26 H 0.234 0.766 27 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 11.829 1.235 -3.461 12.386 hybrid contribution -0.380 0.379 0.361 0.647 sum 11.449 1.614 -3.099 11.970 Atomic orbital electron populations 1.69800 1.08759 1.29933 1.42827 1.26398 0.95030 1.02765 0.91806 0.85788 0.78419 0.77621 0.80266 1.14885 1.23390 1.19960 1.18782 0.92118 0.94618 1.47545 0.93332 1.16952 0.93068 0.98706 0.92178 1.17827 0.90157 0.94784 0.89017 1.42536 1.08505 1.54457 1.35341 1.20096 0.90920 1.11406 1.04124 1.17085 0.85567 0.94880 0.92949 1.41903 1.02926 1.63805 1.32124 1.19690 0.93309 1.09038 1.00928 1.19500 0.95066 1.09711 0.95208 1.18308 0.74598 0.76441 0.84178 1.93057 1.56796 1.85032 1.81762 1.93107 1.68911 1.64166 1.91250 1.93126 1.83099 1.66517 1.74309 0.90833 0.76691 0.76946 0.84143 0.76830 0.76604 0.85492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -49.48 13.94 21.82 0.30 -49.17 15 2 C 0.05 2.60 4.27 85.21 0.36 2.96 15 3 Si 0.95 43.00 24.31 68.60 1.67 44.67 15 4 H -0.23 -8.61 6.27 99.48 0.62 -7.99 15 5 H -0.31 -13.93 7.11 99.48 0.71 -13.22 15 6 H -0.27 -13.15 7.10 99.48 0.71 -12.44 15 7 C -0.50 -27.64 7.40 23.31 0.17 -27.46 15 8 H 0.05 3.05 6.95 -2.91 -0.02 3.03 15 9 C 0.00 -0.12 4.51 -21.14 -0.10 -0.22 15 10 C 0.19 7.83 5.24 38.90 0.20 8.04 15 11 N -0.86 -32.07 6.07 -50.49 -0.31 -32.37 15 12 C -0.24 -8.22 9.71 22.49 0.22 -8.00 15 13 C 0.20 6.68 6.76 38.59 0.26 6.94 15 14 N -0.87 -19.58 9.05 -51.18 -0.46 -20.04 15 15 C -0.20 -7.87 9.20 22.17 0.20 -7.67 15 16 C -0.19 -8.80 5.38 -19.70 -0.11 -8.90 15 17 C 0.52 23.96 2.89 71.24 0.21 24.17 15 18 F -0.18 -7.40 15.94 44.97 0.72 -6.68 15 19 F -0.19 -9.38 15.85 44.97 0.71 -8.67 15 20 F -0.19 -9.37 16.56 44.97 0.74 -8.63 15 21 H 0.28 14.51 8.30 -92.70 -0.77 13.74 15 22 H 0.40 11.60 8.84 -92.71 -0.82 10.78 15 23 H 0.40 16.49 5.94 -92.71 -0.55 15.94 15 24 H 0.14 3.81 8.06 -2.91 -0.02 3.79 15 25 H 0.40 7.54 8.83 -92.71 -0.82 6.72 15 26 H 0.40 7.02 8.83 -92.71 -0.82 6.20 15 27 H 0.13 4.31 7.09 -2.91 -0.02 4.29 15 Total: -1.00 -63.21 240.40 3.00 -60.21 By element: Atomic # 1 Polarization: 32.64 SS G_CDS: -1.81 Total: 30.84 kcal Atomic # 6 Polarization: -11.57 SS G_CDS: 1.43 Total: -10.15 kcal Atomic # 7 Polarization: -101.12 SS G_CDS: -0.47 Total: -101.59 kcal Atomic # 9 Polarization: -26.15 SS G_CDS: 2.17 Total: -23.98 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 1.67 Total: 44.67 kcal Total: -63.21 3.00 -60.21 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575720875.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.653 kcal (2) G-P(sol) polarization free energy of solvation -63.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds